Wall clock time and date at job start Mon Mar 30 2020 02:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00068 * 2 1 4 4 H 1.48497 * 109.47509 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47144 * 300.00118 * 3 2 1 6 6 H 1.48509 * 109.46912 * 59.99604 * 3 2 1 7 7 C 1.37878 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00121 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00290 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47606 * 179.97438 * 9 7 2 11 11 O 1.21281 * 119.99217 * 359.97438 * 10 9 7 12 12 N 1.34773 * 120.00138 * 179.97438 * 10 9 7 13 13 C 1.46497 * 119.99546 * 179.97438 * 12 10 9 14 14 C 1.50707 * 109.47012 * 180.02562 * 13 12 10 15 15 C 1.38238 * 119.99792 * 90.00154 * 14 13 12 16 16 C 1.38235 * 119.99712 * 179.97438 * 15 14 13 17 17 C 1.38234 * 120.00220 * 359.97124 * 16 15 14 18 18 C 1.38233 * 120.00037 * 0.28719 * 17 16 15 19 19 C 1.38234 * 120.00179 * 269.98090 * 14 13 12 20 20 H 0.96998 * 120.00302 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47516 * 59.98871 * 9 7 2 22 22 H 1.09004 * 109.46835 * 299.99500 * 9 7 2 23 23 H 0.96998 * 120.00430 * 0.02562 * 12 10 9 24 24 H 1.09005 * 109.47643 * 60.00506 * 13 12 10 25 25 H 1.09000 * 109.47513 * 299.99670 * 13 12 10 26 26 H 1.08005 * 120.00068 * 359.97438 * 15 14 13 27 27 H 1.07999 * 119.99770 * 179.97438 * 16 15 14 28 28 H 1.08002 * 119.99744 * 180.02562 * 17 16 15 29 29 H 1.07998 * 120.00395 * 179.72811 * 18 17 16 30 30 H 1.07999 * 119.99968 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2303 -3.6447 0.0005 11 8 3.4227 -3.4230 0.0001 12 7 1.7811 -4.9153 0.0011 13 6 2.7331 -6.0288 0.0005 14 6 1.9796 -7.3339 0.0006 15 6 1.6336 -7.9323 -1.1965 16 6 0.9429 -9.1298 -1.1964 17 6 0.5988 -9.7291 0.0008 18 6 0.9401 -9.1280 1.1979 19 6 1.6349 -7.9329 1.1978 20 1 -0.4850 0.8400 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6242 -2.5567 0.8904 23 1 0.8274 -5.0926 0.0011 24 1 3.3604 -5.9710 0.8900 25 1 3.3591 -5.9712 -0.8900 26 1 1.9028 -7.4643 -2.1319 27 1 0.6722 -9.5971 -2.1317 28 1 0.0595 -10.6649 0.0008 29 1 0.6674 -9.5940 2.1332 30 1 1.9059 -7.4658 2.1331 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049806247.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:36 Heat of formation + Delta-G solvation = -46.985366 kcal Electronic energy + Delta-G solvation = -13647.725170 eV Core-core repulsion = 11213.364439 eV Total energy + Delta-G solvation = -2434.360731 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.73304 -39.79962 -35.87143 -35.09460 -32.49025 -31.79305 -30.82847 -27.29563 -25.21935 -23.46580 -22.21369 -21.40838 -18.55360 -18.16698 -17.31129 -16.82536 -16.56388 -16.30871 -15.71896 -15.69574 -14.56510 -14.31069 -14.22398 -13.85323 -13.82603 -13.45347 -13.09380 -12.78675 -12.56897 -12.07066 -11.97026 -11.91112 -11.43713 -10.68185 -10.63337 -10.03647 -9.82453 -9.72212 -8.25591 -6.33090 0.32126 0.49540 1.40083 1.40606 1.55953 1.86550 2.34690 2.51270 3.00619 3.09669 3.68385 3.93464 4.15764 4.29361 4.36485 4.37399 4.60960 4.75320 4.77805 5.05834 5.07482 5.16347 5.25217 5.50691 5.55245 5.61308 5.67619 5.73566 6.04725 6.09418 6.68795 6.83120 7.33002 7.48586 8.86880 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.065360 B = 0.004958 C = 0.004856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.293381 B = 5645.999957 C = 5764.503108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.966 3.034 4 H -0.275 1.275 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.055 0.945 9 C 0.008 3.992 10 C 0.518 3.482 11 O -0.585 6.585 12 N -0.722 5.722 13 C 0.162 3.838 14 C -0.113 4.113 15 C -0.113 4.113 16 C -0.126 4.126 17 C -0.116 4.116 18 C -0.126 4.126 19 C -0.113 4.113 20 H 0.267 0.733 21 H 0.042 0.958 22 H 0.042 0.958 23 H 0.409 0.591 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.125 0.875 27 H 0.145 0.855 28 H 0.149 0.851 29 H 0.145 0.855 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.336 -19.488 0.000 19.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.791 3.209 4 H -0.200 1.200 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.073 0.927 9 C -0.032 4.032 10 C 0.308 3.692 11 O -0.465 6.465 12 N -0.375 5.375 13 C 0.039 3.961 14 C -0.114 4.114 15 C -0.132 4.132 16 C -0.143 4.143 17 C -0.134 4.134 18 C -0.143 4.143 19 C -0.132 4.132 20 H 0.076 0.924 21 H 0.060 0.940 22 H 0.060 0.940 23 H 0.245 0.755 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.143 0.857 27 H 0.163 0.837 28 H 0.167 0.833 29 H 0.163 0.837 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.620 -19.221 0.001 19.231 hybrid contribution -0.041 0.948 -0.002 0.949 sum -0.661 -18.273 -0.001 18.285 Atomic orbital electron populations 1.70042 1.07169 1.28067 1.51242 1.25809 0.95861 1.02810 0.94431 0.85380 0.78574 0.78725 0.78257 1.19962 1.19684 1.19694 1.21409 0.93705 0.91262 1.51149 0.92666 1.19088 0.94287 0.90925 0.98874 1.21496 0.89864 0.84560 0.73320 1.90512 1.19197 1.85492 1.51332 1.46101 1.10696 1.04525 1.76193 1.20126 0.91107 0.82910 1.01967 1.19810 1.01165 0.95758 0.94647 1.21285 0.98253 0.96231 0.97424 1.21462 0.98148 0.95147 0.99589 1.21576 0.99039 1.00639 0.92115 1.21463 0.98126 0.95167 0.99590 1.21284 0.98230 0.96252 0.97423 0.92365 0.93974 0.93964 0.75542 0.91873 0.91886 0.85656 0.83728 0.83334 0.83727 0.85656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.77 13.29 21.45 0.28 -54.48 16 2 C 0.01 0.55 5.46 84.65 0.46 1.01 16 3 Si 0.97 45.83 29.54 68.60 2.03 47.85 16 4 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.54 -32.29 8.92 25.60 0.23 -32.06 16 8 H 0.06 3.49 6.75 -2.91 -0.02 3.48 16 9 C 0.01 0.41 5.46 29.10 0.16 0.57 16 10 C 0.52 24.55 7.82 87.66 0.69 25.23 16 11 O -0.59 -31.94 15.46 -3.03 -0.05 -31.98 16 12 N -0.72 -25.64 5.55 -466.78 -2.59 -28.23 16 13 C 0.16 4.94 5.80 85.64 0.50 5.43 16 14 C -0.11 -2.75 5.25 -19.86 -0.10 -2.85 16 15 C -0.11 -2.43 9.70 22.27 0.22 -2.22 16 16 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 17 C -0.12 -1.79 10.05 22.27 0.22 -1.56 16 18 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 19 C -0.11 -2.43 9.70 22.27 0.22 -2.22 16 20 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 21 H 0.04 2.24 8.14 -2.39 -0.02 2.22 16 22 H 0.04 2.25 8.14 -2.38 -0.02 2.23 16 23 H 0.41 12.61 8.46 -92.71 -0.78 11.82 16 24 H 0.06 2.00 8.09 -2.38 -0.02 1.98 16 25 H 0.06 2.00 8.08 -2.39 -0.02 1.98 16 26 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 27 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 28 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 29 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 30 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -70.33 269.68 3.06 -67.28 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.35 Total: 12.08 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: 3.03 Total: -12.52 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -2.30 Total: -82.71 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.05 Total: -31.98 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -70.33 3.06 -67.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049806247.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.293 kcal (2) G-P(sol) polarization free energy of solvation -70.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds