Wall clock time and date at job start Mon Mar 30 2020 03:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38310 * 119.96471 * 2 1 4 4 C 1.38255 * 120.14472 * 180.02562 * 3 2 1 5 5 C 1.38132 * 120.06651 * 0.25712 * 4 3 2 6 6 C 1.38850 * 119.92980 * 359.51524 * 5 4 3 7 7 N 1.39933 * 120.07188 * 180.23431 * 6 5 4 8 8 C 1.34773 * 119.99893 * 213.53819 * 7 6 5 9 9 O 1.21286 * 120.00143 * 5.26726 * 8 7 6 10 10 C 1.50697 * 119.99910 * 185.27216 * 8 7 6 11 11 C 1.50701 * 109.47258 * 179.97438 * 10 8 7 12 12 H 1.08002 * 119.99749 * 0.02562 * 11 10 8 13 13 C 1.37877 * 120.00385 * 179.97438 * 11 10 8 14 14 N 1.31514 * 119.99944 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00153 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46942 * 90.00264 * 15 13 11 17 17 H 1.48503 * 109.47047 * 209.99845 * 15 13 11 18 18 H 1.48497 * 109.47330 * 330.00036 * 15 13 11 19 19 C 1.38087 * 119.96845 * 180.02562 * 2 1 3 20 20 H 1.08998 * 109.47570 * 89.99625 * 1 2 3 21 21 H 1.09002 * 109.47009 * 209.99928 * 1 2 3 22 22 H 1.09003 * 109.47106 * 329.99674 * 1 2 3 23 23 H 1.08003 * 119.92745 * 0.02857 * 3 2 1 24 24 H 1.07997 * 119.96884 * 179.97438 * 4 3 2 25 25 H 1.08005 * 120.03626 * 179.72405 * 5 4 3 26 26 H 0.96994 * 120.00123 * 33.53113 * 7 6 5 27 27 H 1.08997 * 109.47511 * 299.99521 * 10 8 7 28 28 H 1.09001 * 109.47319 * 59.99916 * 10 8 7 29 29 H 0.96997 * 120.00290 * 180.02562 * 14 13 11 30 30 H 1.08000 * 120.02960 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5803 1.2026 -0.0005 5 6 4.2761 0.0093 -0.0064 6 6 3.5856 -1.1953 -0.0017 7 7 4.2875 -2.4059 -0.0027 8 6 3.7812 -3.4778 -0.6437 9 8 2.7665 -3.3691 -1.2991 10 6 4.4758 -4.8116 -0.5461 11 6 3.7126 -5.8353 -1.3465 12 1 2.8146 -5.5485 -1.8736 13 6 4.1612 -7.1376 -1.4069 14 7 5.2550 -7.4867 -0.7654 15 14 3.2156 -8.4062 -2.3996 16 1 3.7286 -8.4270 -3.7931 17 1 3.3933 -9.7472 -1.7867 18 1 1.7732 -8.0532 -2.4084 19 6 2.1967 -1.1962 -0.0005 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 1.6560 2.1325 0.0005 24 1 4.1168 2.1398 -0.0010 25 1 5.3561 0.0133 -0.0114 26 1 5.1384 -2.4735 0.4579 27 1 5.4884 -4.7237 -0.9396 28 1 4.5173 -5.1242 0.4973 29 1 5.5709 -8.4028 -0.8081 30 1 1.6567 -2.1315 -0.0005 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049806249.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:59 Heat of formation + Delta-G solvation = -45.554665 kcal Electronic energy + Delta-G solvation = -13953.796908 eV Core-core repulsion = 11519.498217 eV Total energy + Delta-G solvation = -2434.298691 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.39013 -39.46037 -35.89867 -35.15384 -33.29059 -31.68041 -29.98552 -27.82800 -25.95944 -23.63848 -22.27609 -21.27594 -18.65461 -18.23463 -17.53999 -17.05716 -16.50072 -16.36139 -15.57156 -15.03962 -14.61801 -14.51546 -14.22723 -13.99716 -13.47312 -13.13895 -12.99538 -12.82664 -12.61745 -12.42203 -12.10042 -12.03925 -11.50301 -11.22401 -10.65505 -10.59342 -9.62706 -9.01393 -8.28747 -6.36515 0.36310 0.48495 1.39133 1.39778 1.52371 1.77859 2.21227 2.44334 2.90043 3.06995 3.89362 4.04850 4.24775 4.29735 4.47487 4.50056 4.67156 4.79611 4.90253 4.97555 5.00605 5.18534 5.26374 5.44695 5.47512 5.60258 5.68968 5.75778 5.99735 6.17803 6.58283 6.76926 7.26474 7.37808 8.83410 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.048956 B = 0.006179 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.810272 B = 4530.504982 C = 4989.404732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.080 4.080 3 C -0.143 4.143 4 C -0.092 4.092 5 C -0.160 4.160 6 C 0.133 3.867 7 N -0.674 5.674 8 C 0.518 3.482 9 O -0.560 6.560 10 C 0.010 3.990 11 C -0.540 4.540 12 H 0.055 0.945 13 C 0.012 3.988 14 N -0.923 5.923 15 Si 0.965 3.035 16 H -0.271 1.271 17 H -0.272 1.272 18 H -0.275 1.275 19 C -0.157 4.157 20 H 0.072 0.928 21 H 0.056 0.944 22 H 0.093 0.907 23 H 0.153 0.847 24 H 0.161 0.839 25 H 0.146 0.854 26 H 0.422 0.578 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.268 0.732 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.593 16.748 3.862 17.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.080 4.080 3 C -0.162 4.162 4 C -0.111 4.111 5 C -0.180 4.180 6 C 0.039 3.961 7 N -0.320 5.320 8 C 0.308 3.692 9 O -0.438 6.438 10 C -0.029 4.029 11 C -0.578 4.578 12 H 0.073 0.927 13 C -0.187 4.187 14 N -0.563 5.563 15 Si 0.790 3.210 16 H -0.196 1.196 17 H -0.197 1.197 18 H -0.200 1.200 19 C -0.178 4.178 20 H 0.091 0.909 21 H 0.075 0.925 22 H 0.112 0.888 23 H 0.170 0.830 24 H 0.179 0.821 25 H 0.164 0.836 26 H 0.260 0.740 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.180 16.583 3.443 17.233 hybrid contribution 0.173 -1.256 -0.236 1.289 sum -3.007 15.328 3.207 15.946 Atomic orbital electron populations 1.20821 0.89733 1.03455 1.02797 1.20110 0.97394 0.92379 0.98148 1.21346 0.94727 0.97617 1.02470 1.21339 0.94252 0.98013 0.97460 1.21196 1.01011 0.90595 1.05233 1.18202 0.91724 0.86298 0.99925 1.43739 1.25149 1.09036 1.54094 1.21751 0.84418 0.86599 0.76386 1.90533 1.26673 1.85443 1.41120 1.19100 0.96824 0.87831 0.99135 1.21338 1.10900 0.94395 1.31150 0.92662 1.25778 0.96048 1.00240 0.96639 1.70020 1.23317 1.19550 1.43370 0.85440 0.78780 0.77932 0.78858 1.19614 1.19739 1.19976 1.21071 0.93452 0.98697 1.04578 0.90931 0.92485 0.88798 0.82955 0.82143 0.83637 0.73970 0.93411 0.93488 0.92268 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.52 10.01 71.23 0.71 -1.80 16 2 C -0.08 -2.25 5.88 -19.88 -0.12 -2.37 16 3 C -0.14 -3.16 9.70 22.29 0.22 -2.94 16 4 C -0.09 -1.94 10.04 22.25 0.22 -1.71 16 5 C -0.16 -4.12 9.96 22.39 0.22 -3.90 16 6 C 0.13 4.54 6.28 38.15 0.24 4.78 16 7 N -0.67 -24.57 5.34 -303.51 -1.62 -26.19 16 8 C 0.52 24.45 7.56 87.66 0.66 25.12 16 9 O -0.56 -30.30 13.15 -3.05 -0.04 -30.34 16 10 C 0.01 0.54 5.46 29.10 0.16 0.70 16 11 C -0.54 -31.98 8.92 25.60 0.23 -31.75 16 12 H 0.06 3.45 6.75 -2.91 -0.02 3.43 16 13 C 0.01 0.68 5.46 84.65 0.46 1.14 16 14 N -0.92 -53.91 13.29 21.45 0.28 -53.62 16 15 Si 0.97 45.44 29.54 68.60 2.03 47.46 16 16 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 19 C -0.16 -5.73 8.31 22.39 0.19 -5.54 16 20 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 21 H 0.06 1.37 8.08 -2.39 -0.02 1.35 16 22 H 0.09 1.52 8.09 -2.39 -0.02 1.50 16 23 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 24 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 25 H 0.15 2.97 8.06 -2.91 -0.02 2.94 16 26 H 0.42 12.31 8.82 -92.71 -0.82 11.49 16 27 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 30 H 0.10 4.27 6.42 -2.91 -0.02 4.25 16 Total: -1.00 -70.79 265.27 4.17 -66.61 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.33 Total: 14.34 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: 3.20 Total: -18.27 kcal Atomic # 7 Polarization: -78.47 SS G_CDS: -1.34 Total: -79.81 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.04 Total: -30.34 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -70.79 4.17 -66.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049806249.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.060 kcal (2) G-P(sol) polarization free energy of solvation -70.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds