Wall clock time and date at job start Mon Mar 30 2020 02:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99833 * 2 1 4 4 H 1.48498 * 109.46945 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47155 * 300.00718 * 3 2 1 6 6 H 1.48506 * 109.46921 * 60.00190 * 3 2 1 7 7 C 1.38811 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00018 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99866 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99983 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.43441 * 34.91869 * 10 9 7 12 12 C 1.53073 * 109.40210 * 154.80766 * 10 9 7 13 13 C 1.53405 * 108.29902 * 168.23913 * 12 10 9 14 14 O 1.42831 * 108.38027 * 295.28511 * 13 12 10 15 15 C 1.35844 * 117.85643 * 49.17711 * 14 13 12 16 16 C 1.39154 * 118.50047 * 162.93448 * 15 14 13 17 17 C 1.37965 * 120.21597 * 179.46023 * 16 15 14 18 18 C 1.38292 * 119.95897 * 0.53717 * 17 16 15 19 19 C 1.38105 * 119.98272 * 359.56747 * 18 17 16 20 20 C 1.38373 * 121.80992 * 342.79911 * 15 14 13 21 21 H 0.96997 * 120.00382 * 359.97438 * 1 2 3 22 22 H 0.97000 * 120.00381 * 0.02562 * 9 7 2 23 23 H 1.08997 * 109.69797 * 287.94728 * 12 10 9 24 24 H 1.09002 * 109.69604 * 48.50044 * 12 10 9 25 25 H 1.08999 * 109.68491 * 55.00600 * 13 12 10 26 26 H 1.09003 * 109.68153 * 175.56546 * 13 12 10 27 27 H 1.08000 * 119.88769 * 359.69487 * 16 15 14 28 28 H 1.07995 * 120.02241 * 180.28516 * 17 16 15 29 29 H 1.08002 * 120.01156 * 179.85422 * 18 17 16 30 30 H 1.07998 * 119.84041 * 180.21676 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3966 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0017 11 1 2.9699 -3.5497 0.5860 12 6 1.1815 -4.7507 0.6131 13 6 1.8395 -6.1082 0.3351 14 8 1.8381 -6.3289 -1.0761 15 6 2.2929 -5.3290 -1.8753 16 6 2.6391 -5.6338 -3.1882 17 6 3.0944 -4.6435 -4.0340 18 6 3.2182 -3.3453 -3.5737 19 6 2.8776 -3.0395 -2.2707 20 6 2.4153 -4.0286 -1.4185 21 1 -0.4850 0.8400 0.0004 22 1 0.3556 -2.3881 -0.0005 23 1 1.1002 -4.5951 1.6888 24 1 0.1895 -4.7233 0.1620 25 1 2.8649 -6.1018 0.7046 26 1 1.2750 -6.8981 0.8307 27 1 2.5474 -6.6482 -3.5473 28 1 3.3579 -4.8826 -5.0536 29 1 3.5768 -2.5698 -4.2344 30 1 2.9719 -2.0242 -1.9148 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051986707.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:43 Heat of formation + Delta-G solvation = -3.293790 kcal Electronic energy + Delta-G solvation = -14699.221936 eV Core-core repulsion = 12266.755814 eV Total energy + Delta-G solvation = -2432.466122 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.13458 -36.94540 -35.45634 -32.44183 -30.25930 -29.69274 -29.22507 -25.07845 -23.20452 -22.66889 -21.55128 -19.45107 -17.57554 -16.82688 -16.11581 -15.61578 -14.86140 -14.49478 -13.67538 -13.65650 -13.41199 -13.07896 -12.81581 -12.43303 -12.00644 -11.46469 -11.04527 -10.99642 -10.83969 -10.63534 -10.34823 -10.21343 -10.05576 -9.55521 -9.03331 -8.17655 -7.62063 -7.09025 -5.85861 -3.15316 1.92573 2.01475 3.37729 3.43776 3.45889 3.71019 4.32629 4.53164 5.14346 5.18408 5.30060 5.39896 5.49882 5.55945 5.62003 5.79120 5.87276 6.04556 6.11107 6.15948 6.29076 6.49274 6.66746 6.69007 6.85354 7.14154 7.30778 7.40229 7.60486 7.94510 8.31621 9.43073 9.98735 10.34928 11.36132 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.032277 B = 0.009751 C = 0.007972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.291307 B = 2870.677208 C = 3511.476359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.009 4.009 3 Si 0.905 3.095 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.245 4.245 8 H 0.074 0.926 9 N -0.715 5.715 10 C 0.214 3.786 11 H 0.061 0.939 12 C -0.163 4.163 13 C 0.066 3.934 14 O -0.325 6.325 15 C 0.120 3.880 16 C -0.165 4.165 17 C -0.101 4.101 18 C -0.165 4.165 19 C -0.058 4.058 20 C -0.162 4.162 21 H 0.256 0.744 22 H 0.386 0.614 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.100 0.900 27 H 0.118 0.882 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.979 -10.220 -2.398 11.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.205 4.205 3 Si 0.735 3.265 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.376 4.376 8 H 0.092 0.908 9 N -0.354 5.354 10 C 0.103 3.897 11 H 0.078 0.922 12 C -0.201 4.201 13 C -0.009 4.009 14 O -0.239 6.239 15 C 0.074 3.926 16 C -0.184 4.184 17 C -0.120 4.120 18 C -0.184 4.184 19 C -0.076 4.076 20 C -0.166 4.166 21 H 0.066 0.934 22 H 0.220 0.780 23 H 0.100 0.900 24 H 0.094 0.906 25 H 0.078 0.922 26 H 0.118 0.882 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.010 -10.226 -2.410 11.639 hybrid contribution 0.057 1.163 0.006 1.165 sum 5.067 -9.062 -2.404 10.658 Atomic orbital electron populations 1.69674 1.05165 1.25765 1.56748 1.24773 0.95503 0.97745 1.02517 0.86158 0.78890 0.84090 0.77315 1.20376 1.21729 1.21746 1.19240 0.91020 0.83893 1.43418 0.90834 1.42416 1.05789 0.99201 1.88039 1.19070 0.94682 0.86773 0.89144 0.92171 1.22468 1.00585 0.94615 1.02455 1.22909 1.00816 0.98108 0.79096 1.85897 1.80450 1.39523 1.18061 1.18816 0.96035 0.87000 0.90712 1.20397 1.05899 0.99746 0.92353 1.20760 0.99649 0.92988 0.98583 1.21073 1.04411 0.96276 0.96600 1.21465 0.93280 1.00554 0.92299 1.21303 1.02849 0.91501 1.00997 0.93385 0.77960 0.89951 0.90647 0.92201 0.88161 0.86377 0.86519 0.86724 0.83662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.37 13.06 55.49 0.72 -26.64 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 3 Si 0.90 21.77 29.55 -169.99 -5.02 16.75 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.25 -6.51 7.81 -15.06 -0.12 -6.62 16 8 H 0.07 1.90 7.48 -52.49 -0.39 1.51 16 9 N -0.71 -17.57 4.89 -54.48 -0.27 -17.84 16 10 C 0.21 4.34 2.98 -69.01 -0.21 4.14 16 11 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 12 C -0.16 -2.73 5.67 -26.48 -0.15 -2.88 16 13 C 0.07 0.95 7.03 37.37 0.26 1.21 16 14 O -0.32 -5.56 10.27 -19.25 -0.20 -5.76 16 15 C 0.12 2.22 6.47 -39.19 -0.25 1.97 16 16 C -0.17 -2.77 9.94 -39.34 -0.39 -3.16 16 17 C -0.10 -1.62 10.04 -39.66 -0.40 -2.01 16 18 C -0.17 -2.91 10.04 -39.61 -0.40 -3.31 16 19 C -0.06 -1.18 9.23 -39.53 -0.36 -1.55 16 20 C -0.16 -3.27 5.56 -104.44 -0.58 -3.85 16 21 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 22 H 0.39 10.22 7.77 -40.82 -0.32 9.90 16 23 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 24 H 0.07 1.34 8.11 -51.93 -0.42 0.92 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 28 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.15 3.26 5.47 -52.49 -0.29 2.98 16 LS Contribution 253.18 15.07 3.82 3.82 Total: -1.00 -29.60 253.18 -7.15 -36.75 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -3.51 Total: 9.32 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -2.69 Total: -16.40 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 0.46 Total: -44.48 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.20 Total: -5.76 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -29.60 -7.15 -36.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051986707.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.453 kcal (2) G-P(sol) polarization free energy of solvation -29.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds