Wall clock time and date at job start Mon Mar 30 2020 02:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99757 * 2 1 4 4 H 1.48507 * 109.47037 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47304 * 299.99486 * 3 2 1 6 6 H 1.48506 * 109.47252 * 60.00034 * 3 2 1 7 7 C 1.37876 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99963 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99620 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.46879 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99940 * 179.97438 * 10 9 7 12 12 H 1.09003 * 110.85607 * 31.27916 * 11 10 9 13 13 C 1.54702 * 110.93934 * 267.55309 * 11 10 9 14 14 O 1.43778 * 102.78116 * 267.06809 * 13 11 10 15 15 C 1.36138 * 109.20214 * 332.10855 * 14 13 11 16 16 C 1.39285 * 129.90125 * 198.80361 * 15 14 13 17 17 C 1.37934 * 120.23813 * 180.91955 * 16 15 14 18 18 C 1.38286 * 120.35096 * 0.29847 * 17 16 15 19 19 C 1.38352 * 119.76577 * 359.26436 * 18 17 16 20 20 C 1.37743 * 119.97730 * 0.52330 * 19 18 17 21 21 H 0.96997 * 119.99788 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47664 * 59.99808 * 9 7 2 23 23 H 1.09000 * 109.47540 * 299.99381 * 9 7 2 24 24 H 1.00897 * 111.00328 * 303.95203 * 10 9 7 25 25 H 1.09010 * 110.74902 * 25.38996 * 13 11 10 26 26 H 1.09003 * 110.75342 * 148.55723 * 13 11 10 27 27 H 1.07999 * 119.87688 * 0.94388 * 16 15 14 28 28 H 1.08002 * 119.82037 * 180.02562 * 17 16 15 29 29 H 1.07998 * 120.11424 * 179.53205 * 18 17 16 30 30 H 1.08001 * 120.00854 * 180.27638 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4990 0.0005 10 7 2.2057 -3.6156 0.0005 11 6 1.5054 -4.9070 0.0011 12 1 0.5550 -4.8332 -0.5274 13 6 1.2965 -5.4220 1.4449 14 8 2.4505 -6.2532 1.6562 15 6 2.8715 -6.7474 0.4595 16 6 3.6937 -7.8369 0.1823 17 6 4.0113 -8.1533 -1.1222 18 6 3.5219 -7.3890 -2.1656 19 6 2.6972 -6.3106 -1.8991 20 6 2.3753 -5.9954 -0.5975 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5570 -0.8896 23 1 0.6241 -2.5567 0.8903 24 1 2.8406 -3.5486 -0.7808 25 1 1.2830 -4.5929 2.1525 26 1 0.3785 -6.0050 1.5180 27 1 4.0837 -8.4363 0.9916 28 1 4.6491 -8.9999 -1.3295 29 1 3.7791 -7.6357 -3.1851 30 1 2.3091 -5.7137 -2.7113 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070068919.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:46 Heat of formation + Delta-G solvation = -4.468394 kcal Electronic energy + Delta-G solvation = -14174.100788 eV Core-core repulsion = 11741.583731 eV Total energy + Delta-G solvation = -2432.517057 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.83275 -37.19103 -35.23812 -32.68696 -30.82936 -29.74722 -28.41544 -25.98502 -23.13773 -22.15580 -21.49191 -20.60671 -17.13924 -16.64309 -16.28764 -15.87937 -15.34136 -14.66248 -14.08985 -13.80456 -13.37689 -13.12103 -12.76111 -12.44997 -12.22239 -11.68934 -11.32846 -11.24831 -10.93633 -10.76318 -10.60050 -10.47356 -9.98633 -9.23578 -8.84366 -8.53975 -7.97575 -7.43732 -6.08946 -4.11152 1.42402 1.54271 3.28587 3.36010 3.41586 3.58005 3.85756 4.39621 4.71476 4.86170 5.02035 5.12081 5.26976 5.32199 5.44493 5.49069 5.71744 5.78789 5.97026 6.05179 6.21366 6.43763 6.57097 6.64743 6.77837 7.10368 7.29365 7.41976 7.71545 8.03333 8.26696 8.48305 8.98017 9.54300 11.02169 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.046666 B = 0.006301 C = 0.005996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.865020 B = 4442.678434 C = 4668.604818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.515 4.515 8 H 0.064 0.936 9 C 0.191 3.809 10 N -0.672 5.672 11 C 0.095 3.905 12 H 0.066 0.934 13 C 0.060 3.940 14 O -0.300 6.300 15 C 0.122 3.878 16 C -0.149 4.149 17 C -0.087 4.087 18 C -0.158 4.158 19 C -0.065 4.065 20 C -0.172 4.172 21 H 0.262 0.738 22 H -0.011 1.011 23 H 0.030 0.970 24 H 0.337 0.663 25 H 0.115 0.885 26 H 0.072 0.928 27 H 0.124 0.876 28 H 0.126 0.874 29 H 0.124 0.876 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.011 -14.200 -2.336 14.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.554 4.554 8 H 0.082 0.918 9 C 0.065 3.935 10 N -0.304 5.304 11 C -0.015 4.015 12 H 0.083 0.917 13 C -0.015 4.015 14 O -0.213 6.213 15 C 0.076 3.924 16 C -0.168 4.168 17 C -0.106 4.106 18 C -0.176 4.176 19 C -0.084 4.084 20 C -0.173 4.173 21 H 0.071 0.929 22 H 0.007 0.993 23 H 0.048 0.952 24 H 0.155 0.845 25 H 0.133 0.867 26 H 0.090 0.910 27 H 0.142 0.858 28 H 0.144 0.856 29 H 0.142 0.858 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.006 -14.064 -1.408 14.691 hybrid contribution -0.113 1.086 -1.001 1.481 sum 3.893 -12.978 -2.409 13.762 Atomic orbital electron populations 1.69967 1.06095 1.26816 1.50830 1.24986 0.94893 0.99433 0.95189 0.86405 0.80094 0.83167 0.77550 1.19614 1.21042 1.20919 1.21189 0.93630 0.90051 1.50489 0.91815 1.19690 0.90572 0.87306 0.95918 1.60827 1.20589 0.99694 1.49270 1.21669 0.95787 0.90076 0.93977 0.91672 1.23948 0.85945 0.93299 0.98347 1.86813 1.45090 1.62515 1.26867 1.19625 0.94904 0.92723 0.85177 1.20205 1.02588 0.96734 0.97278 1.20794 0.98918 0.99250 0.91602 1.20950 1.00431 0.97139 0.99076 1.20362 0.96630 0.96523 0.94859 1.21015 1.04054 0.98158 0.94103 0.92882 0.99303 0.95238 0.84531 0.86665 0.91004 0.85806 0.85589 0.85834 0.86006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.53 13.29 55.43 0.74 -25.80 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -14.54 9.32 -34.44 -0.32 -14.86 16 8 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 9 C 0.19 4.94 5.30 -4.98 -0.03 4.91 16 10 N -0.67 -14.67 6.35 -107.77 -0.68 -15.35 16 11 C 0.10 1.76 3.46 -67.50 -0.23 1.52 16 12 H 0.07 1.19 7.83 -51.93 -0.41 0.79 16 13 C 0.06 1.02 7.73 38.05 0.29 1.32 16 14 O -0.30 -5.35 11.11 -20.18 -0.22 -5.58 16 15 C 0.12 2.03 7.03 -38.95 -0.27 1.76 16 16 C -0.15 -2.06 10.06 -39.30 -0.40 -2.45 16 17 C -0.09 -1.03 10.02 -39.67 -0.40 -1.43 16 18 C -0.16 -1.93 10.07 -39.52 -0.40 -2.33 16 19 C -0.07 -0.94 10.03 -39.72 -0.40 -1.34 16 20 C -0.17 -2.87 5.63 -104.10 -0.59 -3.46 16 21 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 22 H -0.01 -0.29 8.09 -51.93 -0.42 -0.71 16 23 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.34 7.21 8.41 -39.29 -0.33 6.88 16 25 H 0.12 2.05 8.10 -51.92 -0.42 1.63 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 29 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 30 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 262.78 15.07 3.96 3.96 Total: -1.00 -30.45 262.78 -7.73 -38.18 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -3.66 Total: 2.82 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -2.83 Total: -14.85 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.05 Total: -41.15 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.22 Total: -5.58 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.45 -7.73 -38.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070068919.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.710 kcal (2) G-P(sol) polarization free energy of solvation -30.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds