Wall clock time and date at job start Mon Mar 30 2020 02:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00058 * 2 1 4 4 H 1.48500 * 109.47133 * 239.99917 * 3 2 1 5 5 H 1.48492 * 109.47195 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47262 * 119.99956 * 3 2 1 7 7 C 1.37880 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99729 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00358 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47244 * 179.97438 * 9 7 2 11 11 C 1.46896 * 111.00148 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.82657 * 328.70253 * 11 10 9 13 13 C 1.54707 * 110.96695 * 92.42666 * 11 10 9 14 14 O 1.43779 * 102.77725 * 92.95056 * 13 11 10 15 15 C 1.36136 * 109.20388 * 27.89168 * 14 13 11 16 16 C 1.39285 * 129.90168 * 161.19788 * 15 14 13 17 17 C 1.37934 * 120.23813 * 179.03214 * 16 15 14 18 18 C 1.38286 * 120.35096 * 0.29847 * 17 16 15 19 19 C 1.38344 * 119.76916 * 359.63649 * 18 17 16 20 20 C 1.37743 * 119.97801 * 0.52682 * 19 18 17 21 21 H 0.96997 * 120.00227 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46810 * 60.00267 * 9 7 2 23 23 H 1.08998 * 109.47358 * 300.00346 * 9 7 2 24 24 H 1.00900 * 111.00092 * 303.95457 * 10 9 7 25 25 H 1.09007 * 110.75121 * 211.27343 * 13 11 10 26 26 H 1.08997 * 110.74976 * 334.44223 * 13 11 10 27 27 H 1.07999 * 119.87688 * 359.05647 * 16 15 14 28 28 H 1.08002 * 119.82037 * 180.02562 * 17 16 15 29 29 H 1.07999 * 120.11654 * 179.90616 * 18 17 16 30 30 H 1.08006 * 120.01499 * 180.27204 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0018 11 6 1.5053 -4.9071 -0.0024 12 1 0.5555 -4.8331 0.5273 13 6 1.2945 -5.4218 -1.4460 14 8 2.4480 -6.2533 -1.6587 15 6 2.8703 -6.7478 -0.4627 16 6 3.6926 -7.8375 -0.1865 17 6 4.0123 -8.1536 1.1175 18 6 3.5152 -7.3961 2.1621 19 6 2.6989 -6.3112 1.8963 20 6 2.3755 -5.9958 0.5950 21 1 -0.4850 0.8400 -0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5572 0.8896 24 1 2.8398 -3.5484 -0.7836 25 1 0.3778 -6.0074 -1.5173 26 1 1.2771 -4.5924 -2.1531 27 1 4.0814 -8.4369 -0.9964 28 1 4.6509 -8.9999 1.3239 29 1 3.7668 -7.6479 3.1818 30 1 2.3120 -5.7142 2.7089 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070068920.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:49 Heat of formation + Delta-G solvation = -4.526300 kcal Electronic energy + Delta-G solvation = -14176.262689 eV Core-core repulsion = 11743.743121 eV Total energy + Delta-G solvation = -2432.519568 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.88519 -37.21521 -35.21341 -32.68107 -30.83738 -29.73515 -28.39128 -25.87671 -23.14417 -22.00834 -21.62017 -20.82000 -17.19302 -16.63395 -16.16362 -15.83198 -15.33947 -14.64351 -14.17364 -13.65160 -13.36924 -13.12525 -12.99879 -12.27880 -12.24284 -11.63481 -11.38896 -11.18952 -10.95312 -10.84376 -10.65733 -10.51029 -9.98378 -9.29366 -8.69323 -8.54897 -7.99521 -7.42512 -6.08986 -4.11451 1.51205 1.58866 3.31419 3.35129 3.38608 3.50860 3.91621 4.39500 4.81970 4.84709 5.07037 5.18737 5.19103 5.27397 5.46003 5.50986 5.62670 5.79025 5.84074 6.05266 6.24386 6.49649 6.63309 6.74466 6.80135 7.08702 7.29031 7.40228 7.70442 8.02988 8.25142 8.47771 8.96895 9.53859 11.01944 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.046650 B = 0.006297 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.069503 B = 4445.436703 C = 4668.183158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.518 4.518 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.671 5.671 11 C 0.097 3.903 12 H 0.098 0.902 13 C 0.020 3.980 14 O -0.306 6.306 15 C 0.104 3.896 16 C -0.147 4.147 17 C -0.092 4.092 18 C -0.156 4.156 19 C -0.055 4.055 20 C -0.146 4.146 21 H 0.263 0.737 22 H -0.011 1.011 23 H 0.030 0.970 24 H 0.336 0.664 25 H 0.074 0.926 26 H 0.108 0.892 27 H 0.122 0.878 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.822 -14.003 0.845 14.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.556 4.556 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.301 5.301 11 C -0.015 4.015 12 H 0.116 0.884 13 C -0.057 4.057 14 O -0.220 6.220 15 C 0.058 3.942 16 C -0.166 4.166 17 C -0.110 4.110 18 C -0.174 4.174 19 C -0.073 4.073 20 C -0.147 4.147 21 H 0.072 0.928 22 H 0.006 0.994 23 H 0.048 0.952 24 H 0.154 0.846 25 H 0.093 0.907 26 H 0.126 0.874 27 H 0.140 0.860 28 H 0.143 0.857 29 H 0.141 0.859 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.814 -13.850 1.299 14.425 hybrid contribution -0.065 1.049 -0.844 1.348 sum 3.750 -12.801 0.455 13.347 Atomic orbital electron populations 1.69940 1.06089 1.27057 1.50598 1.24975 0.94893 0.99402 0.95144 0.86512 0.79417 0.82475 0.78733 1.20205 1.21280 1.20108 1.21118 0.93562 0.90095 1.50830 0.91935 1.19658 0.90519 0.87152 0.95936 1.60593 1.20527 0.99753 1.49251 1.21731 0.96752 0.90413 0.92567 0.88420 1.24632 0.87183 0.94257 0.99643 1.86811 1.44818 1.63030 1.27368 1.19666 0.95991 0.93532 0.85025 1.20159 1.02572 0.96593 0.97242 1.20770 0.99180 0.99483 0.91603 1.20999 1.00330 0.97083 0.99009 1.20356 0.96043 0.95704 0.95213 1.20861 1.03153 0.96779 0.93932 0.92758 0.99352 0.95152 0.84603 0.90737 0.87427 0.86013 0.85693 0.85879 0.85727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.42 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.56 9.32 -34.44 -0.32 -14.88 16 8 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 9 C 0.19 4.95 5.30 -4.98 -0.03 4.92 16 10 N -0.67 -14.53 6.34 -107.77 -0.68 -15.22 16 11 C 0.10 1.76 3.45 -67.50 -0.23 1.52 16 12 H 0.10 1.75 7.83 -51.93 -0.41 1.35 16 13 C 0.02 0.32 7.45 38.06 0.28 0.60 16 14 O -0.31 -5.26 11.11 -20.17 -0.22 -5.48 16 15 C 0.10 1.71 7.03 -38.95 -0.27 1.43 16 16 C -0.15 -2.04 10.06 -39.30 -0.40 -2.44 16 17 C -0.09 -1.12 10.02 -39.67 -0.40 -1.52 16 18 C -0.16 -1.99 10.07 -39.52 -0.40 -2.39 16 19 C -0.05 -0.83 10.03 -39.72 -0.40 -1.23 16 20 C -0.15 -2.47 5.94 -104.10 -0.62 -3.09 16 21 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 22 H -0.01 -0.30 8.14 -51.93 -0.42 -0.72 16 23 H 0.03 0.83 8.08 -51.93 -0.42 0.41 16 24 H 0.34 7.21 8.41 -39.29 -0.33 6.88 16 25 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16 26 H 0.11 1.75 8.06 -51.93 -0.42 1.33 16 27 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 28 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 29 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 30 H 0.12 1.81 8.06 -52.48 -0.42 1.38 16 LS Contribution 262.75 15.07 3.96 3.96 Total: -1.00 -30.15 262.75 -7.77 -37.92 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -3.66 Total: 3.45 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -2.88 Total: -15.53 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.05 Total: -40.90 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.22 Total: -5.48 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.15 -7.77 -37.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070068920.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.392 kcal (2) G-P(sol) polarization free energy of solvation -30.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds