Wall clock time and date at job start Mon Mar 30 2020 02:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00058 * 2 1 4 4 H 1.48500 * 109.47133 * 239.99917 * 3 2 1 5 5 H 1.48492 * 109.47195 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47262 * 119.99956 * 3 2 1 7 7 C 1.37880 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99729 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00358 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47244 * 179.97438 * 9 7 2 11 11 C 1.46896 * 111.00148 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.82657 * 328.70253 * 11 10 9 13 13 C 1.54707 * 110.96695 * 92.42666 * 11 10 9 14 14 O 1.43779 * 102.77725 * 92.95056 * 13 11 10 15 15 C 1.36136 * 109.20388 * 27.89168 * 14 13 11 16 16 C 1.39285 * 129.90168 * 161.19788 * 15 14 13 17 17 C 1.37934 * 120.23813 * 179.03214 * 16 15 14 18 18 C 1.38286 * 120.35096 * 0.29847 * 17 16 15 19 19 C 1.38344 * 119.76916 * 359.63649 * 18 17 16 20 20 C 1.37743 * 119.97801 * 0.52682 * 19 18 17 21 21 H 0.96997 * 120.00227 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46810 * 60.00267 * 9 7 2 23 23 H 1.08998 * 109.47358 * 300.00346 * 9 7 2 24 24 H 1.00900 * 111.00092 * 303.95457 * 10 9 7 25 25 H 1.09007 * 110.75121 * 211.27343 * 13 11 10 26 26 H 1.08997 * 110.74976 * 334.44223 * 13 11 10 27 27 H 1.07999 * 119.87688 * 359.05647 * 16 15 14 28 28 H 1.08002 * 119.82037 * 180.02562 * 17 16 15 29 29 H 1.07999 * 120.11654 * 179.90616 * 18 17 16 30 30 H 1.08006 * 120.01499 * 180.27204 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0018 11 6 1.5053 -4.9071 -0.0024 12 1 0.5555 -4.8331 0.5273 13 6 1.2945 -5.4218 -1.4460 14 8 2.4480 -6.2533 -1.6587 15 6 2.8703 -6.7478 -0.4627 16 6 3.6926 -7.8375 -0.1865 17 6 4.0123 -8.1536 1.1175 18 6 3.5152 -7.3961 2.1621 19 6 2.6989 -6.3112 1.8963 20 6 2.3755 -5.9958 0.5950 21 1 -0.4850 0.8400 -0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5572 0.8896 24 1 2.8398 -3.5484 -0.7836 25 1 0.3778 -6.0074 -1.5173 26 1 1.2771 -4.5924 -2.1531 27 1 4.0814 -8.4369 -0.9964 28 1 4.6509 -8.9999 1.3239 29 1 3.7668 -7.6479 3.1818 30 1 2.3120 -5.7142 2.7089 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070068920.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:49 Heat of formation + Delta-G solvation = -24.720778 kcal Electronic energy + Delta-G solvation = -14177.138387 eV Core-core repulsion = 11743.743121 eV Total energy + Delta-G solvation = -2433.395266 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.13143 -38.35293 -36.93381 -34.67904 -32.24632 -30.89045 -29.85127 -27.77300 -24.54652 -23.60016 -23.00341 -22.17857 -18.80905 -18.10420 -17.66025 -17.17819 -16.66770 -16.37109 -15.76523 -15.03619 -14.84456 -14.59130 -14.33192 -13.95474 -13.52456 -13.35743 -12.93695 -12.76316 -12.57762 -12.45338 -12.16839 -11.92101 -11.74871 -11.33287 -10.69180 -9.82653 -9.34680 -9.03147 -8.25556 -6.37014 0.38982 0.47372 1.40314 1.43348 1.51580 2.29861 2.37935 2.78608 3.07789 3.45126 3.55362 3.66722 3.93095 4.18909 4.25211 4.34555 4.50483 4.57404 4.66464 4.74840 5.00395 5.11993 5.20270 5.43578 5.55202 5.56212 5.62832 5.70696 5.95279 6.23715 6.34338 6.57055 6.80765 7.33748 8.85387 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.046650 B = 0.006297 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.069503 B = 4445.436703 C = 4668.183158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.541 4.541 8 H 0.060 0.940 9 C 0.210 3.790 10 N -0.673 5.673 11 C 0.091 3.909 12 H 0.090 0.910 13 C 0.027 3.973 14 O -0.318 6.318 15 C 0.079 3.921 16 C -0.148 4.148 17 C -0.081 4.081 18 C -0.148 4.148 19 C -0.072 4.072 20 C -0.171 4.171 21 H 0.267 0.733 22 H -0.029 1.029 23 H 0.004 0.996 24 H 0.335 0.665 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.143 0.857 28 H 0.167 0.833 29 H 0.156 0.844 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.442 -15.146 1.310 16.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.796 3.204 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.579 4.579 8 H 0.079 0.921 9 C 0.083 3.917 10 N -0.303 5.303 11 C -0.020 4.020 12 H 0.108 0.892 13 C -0.050 4.050 14 O -0.233 6.233 15 C 0.034 3.966 16 C -0.167 4.167 17 C -0.098 4.098 18 C -0.166 4.166 19 C -0.091 4.091 20 C -0.173 4.173 21 H 0.075 0.925 22 H -0.011 1.011 23 H 0.023 0.977 24 H 0.153 0.847 25 H 0.116 0.884 26 H 0.119 0.881 27 H 0.161 0.839 28 H 0.185 0.815 29 H 0.173 0.827 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.441 -15.021 1.765 16.073 hybrid contribution -0.548 1.275 -0.930 1.670 sum 4.893 -13.746 0.836 14.615 Atomic orbital electron populations 1.70058 1.07664 1.28201 1.51113 1.25896 0.95794 1.03204 0.94383 0.85397 0.78158 0.77728 0.79093 1.19212 1.20527 1.19474 1.21472 0.93707 0.91492 1.51239 0.92131 1.19277 0.90444 0.88206 0.93745 1.60473 1.20047 1.00376 1.49364 1.21759 0.96642 0.89275 0.94288 0.89188 1.24534 0.88151 0.94449 0.97850 1.86770 1.45137 1.63298 1.28072 1.19993 0.97417 0.94861 0.84350 1.20588 1.01473 0.95718 0.98905 1.21280 0.98254 0.99871 0.90433 1.21402 0.98597 0.95593 1.00991 1.20582 0.97056 0.96988 0.94476 1.20823 1.04427 0.96923 0.95081 0.92463 1.01135 0.97746 0.84668 0.88420 0.88079 0.83921 0.81544 0.82678 0.85977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.70 13.29 21.45 0.28 -55.42 16 2 C 0.01 0.34 5.46 84.66 0.46 0.80 16 3 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.54 -31.09 9.32 25.60 0.24 -30.85 16 8 H 0.06 3.42 7.81 -2.91 -0.02 3.40 16 9 C 0.21 11.24 5.30 85.56 0.45 11.70 16 10 N -0.67 -30.19 6.34 -494.88 -3.14 -33.33 16 11 C 0.09 3.42 3.45 45.05 0.16 3.57 16 12 H 0.09 3.42 7.83 -2.39 -0.02 3.40 16 13 C 0.03 0.88 7.45 72.56 0.54 1.42 16 14 O -0.32 -10.88 11.11 -95.10 -1.06 -11.94 16 15 C 0.08 2.54 7.03 22.68 0.16 2.70 16 16 C -0.15 -3.72 10.06 22.45 0.23 -3.50 16 17 C -0.08 -1.64 10.02 22.21 0.22 -1.41 16 18 C -0.15 -3.31 10.07 22.31 0.22 -3.09 16 19 C -0.07 -2.14 10.03 22.18 0.22 -1.92 16 20 C -0.17 -5.81 5.94 -19.52 -0.12 -5.93 16 21 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 22 H -0.03 -1.62 8.14 -2.39 -0.02 -1.64 16 23 H 0.00 0.26 8.08 -2.39 -0.02 0.24 16 24 H 0.34 14.89 8.41 -89.69 -0.75 14.14 16 25 H 0.10 2.72 8.14 -2.38 -0.02 2.70 16 26 H 0.10 3.40 8.06 -2.39 -0.02 3.39 16 27 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 28 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 29 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 30 H 0.12 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -65.38 262.75 1.29 -64.09 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.38 Total: 16.72 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: 2.79 Total: -26.50 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -2.85 Total: -88.74 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -1.06 Total: -11.94 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -65.38 1.29 -64.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070068920.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.367 kcal (2) G-P(sol) polarization free energy of solvation -65.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds