Wall clock time and date at job start Mon Mar 30 2020 02:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48501 * 109.46868 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46945 * 299.99183 * 3 2 1 6 6 H 1.48491 * 109.47342 * 59.99233 * 3 2 1 7 7 C 1.39864 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00310 * 197.96650 * 7 2 1 9 9 C 1.41140 * 120.00038 * 17.96881 * 7 2 1 10 10 C 1.40880 * 120.15744 * 204.59736 * 9 7 2 11 11 C 1.36335 * 119.83991 * 180.02562 * 10 9 7 12 12 C 1.39565 * 120.16067 * 0.02562 * 11 10 9 13 13 N 1.38854 * 119.84566 * 179.97438 * 12 11 10 14 14 C 1.46502 * 120.00303 * 179.97438 * 13 12 11 15 15 C 1.53365 * 114.56820 * 205.00053 * 14 13 12 16 16 O 1.43352 * 88.49558 * 220.44546 * 15 14 13 17 17 C 1.43352 * 88.32261 * 28.12971 * 16 15 14 18 18 C 1.39575 * 120.31464 * 0.25518 * 12 11 10 19 19 C 1.36336 * 120.15846 * 359.48032 * 18 12 11 20 20 H 0.96997 * 120.00026 * 0.02562 * 1 2 3 21 21 H 1.08002 * 120.07984 * 359.97438 * 10 9 7 22 22 H 1.08002 * 119.92513 * 179.97438 * 11 10 9 23 23 H 0.97003 * 120.00176 * 0.02562 * 13 12 11 24 24 H 1.08997 * 113.56715 * 339.28395 * 14 13 12 25 25 H 1.09000 * 113.39078 * 105.52637 * 15 14 13 26 26 H 1.08992 * 113.39336 * 335.36941 * 15 14 13 27 27 H 1.09003 * 113.39184 * 86.74306 * 17 16 15 28 28 H 1.08995 * 113.38893 * 216.90502 * 17 16 15 29 29 H 1.07997 * 119.91870 * 179.72157 * 18 12 11 30 30 H 1.08000 * 120.08148 * 180.23417 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 3.7031 1.3464 0.0006 5 1 1.8844 2.3964 -1.2126 6 1 1.8842 2.3965 1.2123 7 6 2.0084 -1.2112 0.0005 8 1 3.0489 -1.2340 0.2891 9 6 1.3544 -2.4039 -0.3760 10 6 1.8268 -3.6472 0.0886 11 6 1.1903 -4.7953 -0.2796 12 6 0.0737 -4.7411 -1.1151 13 7 -0.5691 -5.9145 -1.4865 14 6 -1.7418 -5.8615 -2.3629 15 6 -2.6945 -7.0556 -2.2263 16 8 -2.8484 -7.0476 -3.6515 17 6 -1.5324 -6.4876 -3.7483 18 6 -0.3963 -3.5134 -1.5840 19 6 0.2269 -2.3569 -1.2196 20 1 -0.4850 0.8400 -0.0004 21 1 2.6915 -3.6908 0.7342 22 1 1.5516 -5.7492 0.0755 23 1 -0.2422 -6.7693 -1.1650 24 1 -2.2333 -4.8887 -2.3750 25 1 -3.6132 -6.8171 -1.6904 26 1 -2.2091 -7.9554 -1.8485 27 1 -0.7428 -7.2389 -3.7679 28 1 -1.4328 -5.7521 -4.5464 29 1 -1.2582 -3.4792 -2.2339 30 1 -0.1402 -1.4073 -1.5801 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082488597.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:13 Heat of formation + Delta-G solvation = -2.717229 kcal Electronic energy + Delta-G solvation = -14077.795217 eV Core-core repulsion = 11645.354096 eV Total energy + Delta-G solvation = -2432.441121 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.72183 -39.53804 -36.34937 -34.54727 -31.37761 -31.05048 -28.91286 -27.15222 -25.99640 -23.44488 -22.33211 -21.07427 -19.16794 -18.07182 -17.60010 -17.05809 -16.80829 -16.53203 -15.76340 -14.94608 -14.60425 -14.21314 -13.97582 -13.72116 -13.50297 -13.25764 -12.97888 -12.74468 -12.36292 -12.34424 -12.05028 -11.56816 -11.18061 -11.06231 -10.74774 -10.30201 -9.40912 -8.56289 -8.20207 -6.02296 1.08516 1.18448 1.41067 1.54848 1.57276 2.27527 2.75394 2.82491 3.04128 3.39083 3.86958 3.94112 4.30987 4.36020 4.46614 4.51471 4.65707 4.82440 4.95806 5.01550 5.03857 5.17876 5.27984 5.44557 5.67361 5.80414 5.95248 6.18645 6.37581 6.63707 6.84128 7.07953 7.11580 7.28182 8.47334 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.057027 B = 0.006145 C = 0.005767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.877294 B = 4555.249644 C = 4853.974530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.032 3.968 3 Si 0.976 3.024 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.269 1.269 7 C -0.504 4.504 8 H 0.068 0.932 9 C 0.036 3.964 10 C -0.198 4.198 11 C -0.159 4.159 12 C 0.104 3.896 13 N -0.731 5.731 14 C 0.093 3.907 15 C 0.025 3.975 16 O -0.388 6.388 17 C 0.008 3.992 18 C -0.173 4.173 19 C -0.146 4.146 20 H 0.282 0.718 21 H 0.097 0.903 22 H 0.122 0.878 23 H 0.402 0.598 24 H 0.107 0.893 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.107 0.893 30 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.509 -8.686 -3.414 9.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.180 4.180 3 Si 0.798 3.202 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.194 1.194 7 C -0.536 4.536 8 H 0.086 0.914 9 C 0.033 3.967 10 C -0.218 4.218 11 C -0.181 4.181 12 C 0.006 3.994 13 N -0.366 5.366 14 C -0.015 4.015 15 C -0.053 4.053 16 O -0.306 6.306 17 C -0.070 4.070 18 C -0.194 4.194 19 C -0.166 4.166 20 H 0.093 0.907 21 H 0.116 0.884 22 H 0.139 0.861 23 H 0.238 0.762 24 H 0.124 0.876 25 H 0.117 0.883 26 H 0.117 0.883 27 H 0.110 0.890 28 H 0.105 0.895 29 H 0.125 0.875 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.050 -8.542 -3.691 9.792 hybrid contribution 0.487 0.703 0.286 0.902 sum -2.563 -7.838 -3.405 8.922 Atomic orbital electron populations 1.69919 1.08763 1.29784 1.38412 1.26612 0.95443 1.04122 0.91822 0.85252 0.79418 0.76873 0.78671 1.18410 1.19177 1.19379 1.19635 0.98051 0.92765 1.43112 0.91370 1.17864 0.93524 0.93151 0.92141 1.20766 1.03173 0.92844 1.04999 1.20126 0.97551 0.97768 1.02659 1.17434 0.95206 0.86536 1.00231 1.43744 1.31723 1.05301 1.55825 1.23626 0.87745 1.00072 0.90068 1.24278 1.00352 0.98039 0.82645 1.89830 1.32526 1.85880 1.22390 1.24545 0.85533 0.97433 0.99527 1.20311 1.01944 0.91900 1.05287 1.20869 0.99001 0.96771 0.99934 0.90733 0.88442 0.86056 0.76178 0.87564 0.88316 0.88256 0.88973 0.89548 0.87506 0.88365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.58 10.97 21.82 0.24 -45.34 16 2 C 0.03 1.68 5.13 85.22 0.44 2.11 16 3 Si 0.98 39.80 29.60 68.60 2.03 41.83 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 6 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 7 C -0.50 -28.11 9.03 23.38 0.21 -27.90 16 8 H 0.07 3.69 7.91 -2.91 -0.02 3.67 16 9 C 0.04 1.98 5.57 -21.27 -0.12 1.86 16 10 C -0.20 -9.65 9.74 22.47 0.22 -9.44 16 11 C -0.16 -6.66 9.82 22.15 0.22 -6.44 16 12 C 0.10 4.21 6.67 38.67 0.26 4.46 16 13 N -0.73 -21.83 5.55 -323.12 -1.79 -23.62 16 14 C 0.09 2.48 4.58 45.27 0.21 2.69 16 15 C 0.02 0.53 8.53 63.85 0.54 1.08 16 16 O -0.39 -10.21 12.74 -148.98 -1.90 -12.11 16 17 C 0.01 0.20 8.57 63.88 0.55 0.75 16 18 C -0.17 -7.84 9.20 22.15 0.20 -7.63 16 19 C -0.15 -7.74 8.64 22.48 0.19 -7.54 16 20 H 0.28 13.89 8.30 -92.71 -0.77 13.12 16 21 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 22 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 23 H 0.40 9.89 8.77 -92.71 -0.81 9.08 16 24 H 0.11 3.15 6.03 -2.39 -0.01 3.14 16 25 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.10 1.72 8.14 -2.39 -0.02 1.71 16 27 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.11 4.36 5.97 -2.91 -0.02 4.34 16 30 H 0.10 5.53 6.16 -2.91 -0.02 5.51 16 Total: -1.00 -61.19 257.48 1.84 -59.35 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 0.34 Total: 25.89 kcal Atomic # 6 Polarization: -48.92 SS G_CDS: 2.92 Total: -46.00 kcal Atomic # 7 Polarization: -67.40 SS G_CDS: -1.56 Total: -68.96 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -1.90 Total: -12.11 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Total: -61.19 1.84 -59.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082488597.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.631 kcal (2) G-P(sol) polarization free energy of solvation -61.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds