Wall clock time and date at job start Mon Mar 30 2020 02:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99593 * 2 1 4 4 H 1.48501 * 109.46985 * 269.99487 * 3 2 1 5 5 H 1.48498 * 109.47429 * 29.99463 * 3 2 1 6 6 H 1.48501 * 109.47076 * 149.99885 * 3 2 1 7 7 C 1.37875 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00150 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99458 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.27287 * 300.49070 * 9 7 2 11 11 N 1.46632 * 109.26913 * 60.00629 * 9 7 2 12 12 C 1.47166 * 110.24480 * 172.72697 * 11 9 7 13 13 C 1.52892 * 108.50160 * 288.76839 * 12 11 9 14 14 C 1.50727 * 109.96296 * 50.41983 * 13 12 11 15 15 C 1.38718 * 118.46832 * 163.29077 * 14 13 12 16 16 C 1.38058 * 120.46912 * 179.55430 * 15 14 13 17 17 C 1.38168 * 119.88923 * 0.02615 * 16 15 14 18 18 C 1.38514 * 119.80692 * 0.08744 * 17 16 15 19 19 O 1.35895 * 119.87073 * 179.97438 * 18 17 16 20 20 C 1.37747 * 121.64961 * 343.01498 * 14 13 12 21 21 H 0.96998 * 120.00524 * 0.02562 * 1 2 3 22 22 H 1.00899 * 111.00506 * 49.30539 * 11 9 7 23 23 H 1.08993 * 109.63161 * 48.47043 * 12 11 9 24 24 H 1.09000 * 109.63513 * 169.06318 * 12 11 9 25 25 H 1.09002 * 109.39208 * 170.57151 * 13 12 11 26 26 H 1.09010 * 109.38768 * 290.26775 * 13 12 11 27 27 H 1.08006 * 119.76158 * 359.54286 * 15 14 13 28 28 H 1.07998 * 120.05428 * 180.02562 * 16 15 14 29 29 H 1.07997 * 120.09485 * 180.10356 * 17 16 15 30 30 H 0.96701 * 114.00216 * 269.97618 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 1 3.8716 -0.6720 -0.8855 11 7 3.9949 -0.5017 1.2000 12 6 5.4559 -0.6385 1.3128 13 6 5.7801 -2.0850 1.6873 14 6 5.0657 -3.0303 0.7557 15 6 5.4924 -4.3489 0.6967 16 6 4.8618 -5.2522 -0.1354 17 6 3.7983 -4.8425 -0.9165 18 6 3.3709 -3.5260 -0.8621 19 8 2.3254 -3.1215 -1.6302 20 6 4.0079 -2.6158 -0.0231 21 1 -0.4851 0.8400 -0.0004 22 1 3.5342 -0.8480 2.0281 23 1 5.9214 -0.3943 0.3580 24 1 5.8279 0.0324 2.0871 25 1 6.8555 -2.2461 1.6116 26 1 5.4587 -2.2743 2.7116 27 1 6.3239 -4.6711 1.3060 28 1 5.1992 -6.2773 -0.1757 29 1 3.3015 -5.5467 -1.5674 30 1 2.5819 -2.7957 -2.5037 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083660415.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:13 Heat of formation + Delta-G solvation = -4.912789 kcal Electronic energy + Delta-G solvation = -15052.096266 eV Core-core repulsion = 12619.559939 eV Total energy + Delta-G solvation = -2432.536327 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.79291 -36.72203 -35.58561 -32.59250 -30.93927 -30.09760 -28.15156 -25.46581 -22.86300 -22.42635 -20.89281 -19.45963 -17.28935 -16.88139 -15.54242 -15.23229 -14.69048 -14.32060 -13.98353 -13.67382 -13.22082 -12.67895 -12.51864 -12.33040 -11.70858 -11.54428 -11.45076 -10.96135 -10.66589 -10.57207 -10.18294 -9.82773 -9.57262 -8.97249 -8.45387 -8.08202 -7.81418 -7.09827 -5.89455 -3.95516 1.78418 1.89044 3.53364 3.63899 3.95651 4.14873 4.74837 4.95361 5.10020 5.15391 5.33824 5.51530 5.58572 5.66333 5.71796 5.83571 5.92140 6.01760 6.26166 6.36612 6.44847 6.61211 6.79299 6.87208 7.03449 7.05865 7.38868 7.69011 8.12920 8.26932 8.53753 8.74164 9.24616 9.72715 11.19939 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.031735 B = 0.013109 C = 0.009849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.105164 B = 2135.355872 C = 2842.323822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.081 3.919 3 Si 0.850 3.150 4 H -0.297 1.297 5 H -0.304 1.304 6 H -0.190 1.190 7 C -0.503 4.503 8 H 0.089 0.911 9 C 0.218 3.782 10 H 0.046 0.954 11 N -0.671 5.671 12 C 0.047 3.953 13 C -0.112 4.112 14 C -0.082 4.082 15 C -0.140 4.140 16 C -0.122 4.122 17 C -0.164 4.164 18 C 0.131 3.869 19 O -0.464 6.464 20 C -0.098 4.098 21 H 0.260 0.740 22 H 0.338 0.662 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.112 0.888 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.908 -5.692 0.072 13.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.122 4.122 3 Si 0.677 3.323 4 H -0.225 1.225 5 H -0.232 1.232 6 H -0.111 1.111 7 C -0.541 4.541 8 H 0.107 0.893 9 C 0.110 3.890 10 H 0.063 0.937 11 N -0.300 5.300 12 C -0.084 4.084 13 C -0.151 4.151 14 C -0.082 4.082 15 C -0.158 4.158 16 C -0.140 4.140 17 C -0.183 4.183 18 C 0.085 3.915 19 O -0.273 6.273 20 C -0.100 4.100 21 H 0.070 0.930 22 H 0.157 0.843 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.130 0.870 28 H 0.133 0.867 29 H 0.137 0.863 30 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 11.445 -5.100 0.277 12.533 hybrid contribution 0.554 -0.114 -0.228 0.610 sum 11.999 -5.214 0.049 13.083 Atomic orbital electron populations 1.69954 1.06807 1.26918 1.49982 1.24997 0.94516 0.99518 0.93212 0.87448 0.84862 0.81969 0.78024 1.22460 1.23169 1.11110 1.21014 0.86684 0.95088 1.51309 0.89323 1.18534 0.96714 0.83656 0.90076 0.93659 1.62156 1.01701 1.58932 1.07233 1.22074 0.92489 0.92889 1.00906 1.21170 0.99232 0.96705 0.98008 1.19536 0.96286 0.94300 0.98107 1.20925 1.01062 0.93232 1.00626 1.20733 0.96713 0.98879 0.97688 1.21381 0.98211 0.96351 1.02340 1.18440 0.87741 0.90873 0.94421 1.85157 1.28523 1.84323 1.29256 1.21241 0.93218 0.99695 0.95876 0.93025 0.84324 0.91775 0.91534 0.91454 0.91122 0.87036 0.86737 0.86344 0.77012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 2 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 3 Si 0.85 21.18 26.91 -169.99 -4.58 16.60 16 4 H -0.30 -7.55 7.11 56.52 0.40 -7.14 16 5 H -0.30 -7.87 7.11 56.52 0.40 -7.46 16 6 H -0.19 -4.37 5.17 56.52 0.29 -4.08 16 7 C -0.50 -13.81 7.63 -34.44 -0.26 -14.08 16 8 H 0.09 2.75 6.28 -52.49 -0.33 2.42 16 9 C 0.22 4.99 1.80 -70.20 -0.13 4.86 16 10 H 0.05 1.08 7.54 -51.93 -0.39 0.69 16 11 N -0.67 -14.00 3.24 -109.29 -0.35 -14.35 16 12 C 0.05 0.78 6.62 -3.73 -0.02 0.75 16 13 C -0.11 -1.72 5.82 -27.93 -0.16 -1.88 16 14 C -0.08 -1.47 5.77 -104.61 -0.60 -2.07 16 15 C -0.14 -2.22 9.65 -39.47 -0.38 -2.60 16 16 C -0.12 -1.89 10.04 -39.67 -0.40 -2.28 16 17 C -0.16 -2.83 9.98 -39.51 -0.39 -3.22 16 18 C 0.13 2.64 6.23 -39.12 -0.24 2.40 16 19 O -0.46 -9.79 10.22 -19.41 -0.20 -9.99 16 20 C -0.10 -2.03 5.48 -104.48 -0.57 -2.60 16 21 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 22 H 0.34 7.20 8.55 -39.29 -0.34 6.86 16 23 H 0.06 1.08 8.05 -51.93 -0.42 0.66 16 24 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 27 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 28 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.37 6.22 9.06 45.56 0.41 6.63 16 LS Contribution 244.59 15.07 3.69 3.69 Total: -1.00 -31.89 244.59 -6.78 -38.67 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -2.84 Total: 10.95 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -3.27 Total: -18.50 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.42 Total: -41.41 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -0.20 Total: -9.99 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.58 Total: 16.60 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -31.89 -6.78 -38.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083660415.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.759 kcal (2) G-P(sol) polarization free energy of solvation -31.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds