Wall clock time and date at job start Mon Mar 30 2020 02:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99593 * 2 1 4 4 H 1.48501 * 109.46985 * 269.99487 * 3 2 1 5 5 H 1.48498 * 109.47429 * 29.99463 * 3 2 1 6 6 H 1.48501 * 109.47076 * 149.99885 * 3 2 1 7 7 C 1.37875 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00150 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99458 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.27287 * 300.49070 * 9 7 2 11 11 N 1.46632 * 109.26913 * 60.00629 * 9 7 2 12 12 C 1.47166 * 110.24480 * 172.72697 * 11 9 7 13 13 C 1.52892 * 108.50160 * 288.76839 * 12 11 9 14 14 C 1.50727 * 109.96296 * 50.41983 * 13 12 11 15 15 C 1.38718 * 118.46832 * 163.29077 * 14 13 12 16 16 C 1.38058 * 120.46912 * 179.55430 * 15 14 13 17 17 C 1.38168 * 119.88923 * 0.02615 * 16 15 14 18 18 C 1.38514 * 119.80692 * 0.08744 * 17 16 15 19 19 O 1.35895 * 119.87073 * 179.97438 * 18 17 16 20 20 C 1.37747 * 121.64961 * 343.01498 * 14 13 12 21 21 H 0.96998 * 120.00524 * 0.02562 * 1 2 3 22 22 H 1.00899 * 111.00506 * 49.30539 * 11 9 7 23 23 H 1.08993 * 109.63161 * 48.47043 * 12 11 9 24 24 H 1.09000 * 109.63513 * 169.06318 * 12 11 9 25 25 H 1.09002 * 109.39208 * 170.57151 * 13 12 11 26 26 H 1.09010 * 109.38768 * 290.26775 * 13 12 11 27 27 H 1.08006 * 119.76158 * 359.54286 * 15 14 13 28 28 H 1.07998 * 120.05428 * 180.02562 * 16 15 14 29 29 H 1.07997 * 120.09485 * 180.10356 * 17 16 15 30 30 H 0.96701 * 114.00216 * 269.97618 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 1 3.8716 -0.6720 -0.8855 11 7 3.9949 -0.5017 1.2000 12 6 5.4559 -0.6385 1.3128 13 6 5.7801 -2.0850 1.6873 14 6 5.0657 -3.0303 0.7557 15 6 5.4924 -4.3489 0.6967 16 6 4.8618 -5.2522 -0.1354 17 6 3.7983 -4.8425 -0.9165 18 6 3.3709 -3.5260 -0.8621 19 8 2.3254 -3.1215 -1.6302 20 6 4.0079 -2.6158 -0.0231 21 1 -0.4851 0.8400 -0.0004 22 1 3.5342 -0.8480 2.0281 23 1 5.9214 -0.3943 0.3580 24 1 5.8279 0.0324 2.0871 25 1 6.8555 -2.2461 1.6116 26 1 5.4587 -2.2743 2.7116 27 1 6.3239 -4.6711 1.3060 28 1 5.1992 -6.2773 -0.1757 29 1 3.3015 -5.5467 -1.5674 30 1 2.5819 -2.7957 -2.5037 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083660415.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:13 Heat of formation + Delta-G solvation = -28.595231 kcal Electronic energy + Delta-G solvation = -15053.123214 eV Core-core repulsion = 12619.559939 eV Total energy + Delta-G solvation = -2433.563275 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.22191 -38.23599 -37.07334 -34.55779 -32.60402 -31.52601 -29.60109 -27.26647 -24.33501 -23.93642 -22.44014 -20.90625 -18.89689 -18.79449 -16.98927 -16.69745 -16.36669 -15.98496 -15.38566 -15.26131 -14.72131 -14.27937 -14.12828 -13.97491 -13.26177 -12.91137 -12.88316 -12.70952 -12.31571 -11.99755 -11.86035 -11.61926 -11.37923 -10.80035 -10.64151 -9.42931 -9.26480 -8.73348 -8.11536 -6.19453 0.44650 0.52185 1.51815 1.58890 1.96239 2.65376 2.80239 3.21027 3.56579 3.81486 3.91974 4.12771 4.21021 4.34523 4.42190 4.53880 4.73419 4.75253 4.97065 5.07495 5.09909 5.19014 5.31530 5.45682 5.58704 5.64043 5.86745 6.09043 6.30190 6.45512 6.84899 6.98313 7.12969 7.51864 9.01740 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.031735 B = 0.013109 C = 0.009849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.105164 B = 2135.355872 C = 2842.323822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.020 3.980 3 Si 0.916 3.084 4 H -0.304 1.304 5 H -0.318 1.318 6 H -0.154 1.154 7 C -0.487 4.487 8 H 0.042 0.958 9 C 0.229 3.771 10 H 0.034 0.966 11 N -0.682 5.682 12 C 0.045 3.955 13 C -0.106 4.106 14 C -0.087 4.087 15 C -0.136 4.136 16 C -0.111 4.111 17 C -0.171 4.171 18 C 0.099 3.901 19 O -0.493 6.493 20 C -0.136 4.136 21 H 0.257 0.743 22 H 0.335 0.665 23 H 0.064 0.936 24 H 0.094 0.906 25 H 0.102 0.898 26 H 0.081 0.919 27 H 0.151 0.849 28 H 0.154 0.846 29 H 0.133 0.867 30 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.618 -6.607 1.227 17.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.177 4.177 3 Si 0.742 3.258 4 H -0.232 1.232 5 H -0.246 1.246 6 H -0.074 1.074 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.121 3.879 10 H 0.051 0.949 11 N -0.312 5.312 12 C -0.084 4.084 13 C -0.145 4.145 14 C -0.087 4.087 15 C -0.154 4.154 16 C -0.128 4.128 17 C -0.189 4.189 18 C 0.054 3.946 19 O -0.304 6.304 20 C -0.139 4.139 21 H 0.066 0.934 22 H 0.153 0.847 23 H 0.082 0.918 24 H 0.112 0.888 25 H 0.120 0.880 26 H 0.099 0.901 27 H 0.168 0.832 28 H 0.172 0.828 29 H 0.151 0.849 30 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 15.196 -6.034 1.431 16.413 hybrid contribution -0.546 -0.017 -0.605 0.815 sum 14.650 -6.051 0.826 15.872 Atomic orbital electron populations 1.70120 1.08810 1.27439 1.53303 1.25854 0.95060 1.03331 0.93489 0.86517 0.84744 0.76967 0.77574 1.23217 1.24622 1.07392 1.21127 0.89573 0.92897 1.48978 0.94030 1.18111 0.93426 0.85839 0.90550 0.94852 1.61829 1.04654 1.58628 1.06054 1.22213 0.89267 0.94909 1.02024 1.21174 1.00975 0.94661 0.97654 1.19898 0.95272 0.96033 0.97521 1.21362 1.01565 0.92119 1.00338 1.21225 0.95063 1.00729 0.95827 1.21594 0.99005 0.95203 1.03126 1.18824 0.88180 0.92455 0.95110 1.85097 1.30216 1.84743 1.30332 1.21146 0.95665 0.98596 0.98477 0.93423 0.84731 0.91757 0.88778 0.87967 0.90065 0.83182 0.82817 0.84907 0.75787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.18 13.96 21.45 0.30 -61.88 16 2 C 0.02 1.17 5.47 84.65 0.46 1.63 16 3 Si 0.92 44.99 26.91 68.60 1.85 46.84 16 4 H -0.30 -15.14 7.11 99.48 0.71 -14.43 16 5 H -0.32 -16.20 7.11 99.48 0.71 -15.49 16 6 H -0.15 -6.62 5.17 99.48 0.51 -6.11 16 7 C -0.49 -27.86 7.63 25.60 0.20 -27.66 16 8 H 0.04 2.74 6.28 -2.91 -0.02 2.72 16 9 C 0.23 10.52 1.80 43.45 0.08 10.60 16 10 H 0.03 1.60 7.54 -2.39 -0.02 1.59 16 11 N -0.68 -27.26 3.24 -499.67 -1.62 -28.87 16 12 C 0.05 1.34 6.62 86.22 0.57 1.91 16 13 C -0.11 -2.76 5.82 29.82 0.17 -2.59 16 14 C -0.09 -2.83 5.77 -19.86 -0.11 -2.95 16 15 C -0.14 -3.66 9.65 22.34 0.22 -3.44 16 16 C -0.11 -2.97 10.04 22.21 0.22 -2.75 16 17 C -0.17 -5.62 9.98 22.32 0.22 -5.40 16 18 C 0.10 4.06 6.23 22.57 0.14 4.20 16 19 O -0.49 -22.04 10.22 -92.37 -0.94 -22.99 16 20 C -0.14 -5.58 5.48 -19.77 -0.11 -5.69 16 21 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 22 H 0.33 13.80 8.55 -89.69 -0.77 13.04 16 23 H 0.06 1.92 8.05 -2.39 -0.02 1.90 16 24 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 27 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 28 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 29 H 0.13 3.86 8.06 -2.91 -0.02 3.83 16 30 H 0.39 13.85 9.06 -74.06 -0.67 13.18 16 Total: -1.00 -72.76 244.59 1.18 -71.58 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: -0.46 Total: 27.47 kcal Atomic # 6 Polarization: -34.20 SS G_CDS: 2.06 Total: -32.14 kcal Atomic # 7 Polarization: -89.44 SS G_CDS: -1.32 Total: -90.76 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.94 Total: -22.99 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.85 Total: 46.84 kcal Total: -72.76 1.18 -71.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083660415.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.982 kcal (2) G-P(sol) polarization free energy of solvation -72.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds