Wall clock time and date at job start Mon Mar 30 2020 02:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.26848 * 299.99586 * 9 7 2 11 11 N 1.46622 * 109.27557 * 59.50680 * 9 7 2 12 12 C 1.47162 * 110.25981 * 172.84221 * 11 9 7 13 13 C 1.52890 * 108.45462 * 288.66092 * 12 11 9 14 14 C 1.50728 * 109.96323 * 50.44355 * 13 12 11 15 15 C 1.38589 * 118.43993 * 163.25045 * 14 13 12 16 16 C 1.38523 * 120.31204 * 179.56408 * 15 14 13 17 17 O 1.35899 * 120.14677 * 180.08882 * 16 15 14 18 18 C 1.38758 * 119.70509 * 0.05772 * 16 15 14 19 19 C 1.37916 * 119.81068 * 0.08165 * 18 16 15 20 20 C 1.37886 * 121.65486 * 343.03473 * 14 13 12 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.00899 * 110.99608 * 296.23419 * 11 9 7 23 23 H 1.09001 * 109.63562 * 168.98107 * 12 11 9 24 24 H 1.09008 * 109.83590 * 48.45861 * 12 11 9 25 25 H 1.08992 * 109.39205 * 290.28710 * 13 12 11 26 26 H 1.09001 * 109.38634 * 170.59070 * 13 12 11 27 27 H 1.08005 * 119.84167 * 359.58534 * 15 14 13 28 28 H 0.96699 * 113.99535 * 269.97328 * 17 16 15 29 29 H 1.08002 * 120.09304 * 180.02562 * 18 16 15 30 30 H 1.08003 * 119.76451 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8716 -0.6790 -0.8906 11 7 3.9951 -0.4926 1.1933 12 6 5.4563 -0.6262 1.3059 13 6 5.7819 -2.0689 1.6932 14 6 5.0679 -3.0231 0.7704 15 6 5.4963 -4.3403 0.7228 16 6 4.8622 -5.2523 -0.1049 17 8 5.2839 -6.5435 -0.1475 18 6 3.7942 -4.8417 -0.8898 19 6 3.3727 -3.5294 -0.8419 20 6 4.0086 -2.6161 -0.0129 21 1 -0.4850 0.8401 0.0004 22 1 3.7213 0.4785 1.1776 23 1 5.8280 0.0520 2.0740 24 1 5.9241 -0.3889 0.3504 25 1 5.4612 -2.2495 2.7191 26 1 6.8574 -2.2297 1.6183 27 1 6.3282 -4.6573 1.3343 28 1 5.9645 -6.7131 -0.8131 29 1 3.2950 -5.5476 -1.5371 30 1 2.5415 -3.2106 -1.4534 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083660416.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:08 Heat of formation + Delta-G solvation = -35.817633 kcal Electronic energy + Delta-G solvation = -14698.820348 eV Core-core repulsion = 12264.943886 eV Total energy + Delta-G solvation = -2433.876462 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.10425 -38.90062 -36.48116 -35.05236 -33.35240 -31.09885 -30.05189 -27.44645 -24.42849 -24.11804 -22.65376 -20.75100 -18.91571 -18.70482 -17.98150 -16.79574 -16.28310 -16.25728 -15.68552 -15.26553 -15.04810 -14.65024 -14.18467 -13.85374 -13.54340 -13.37322 -12.84119 -12.81092 -12.38636 -12.20063 -11.93296 -11.63175 -11.41274 -11.10203 -10.82600 -9.67449 -9.39539 -9.08192 -8.33856 -6.40040 0.40223 0.47313 1.22671 1.28537 1.35750 2.24491 2.73590 2.93599 3.33612 3.55770 3.86294 4.04427 4.17739 4.30131 4.35804 4.55412 4.63692 4.70624 4.76401 4.92164 5.09680 5.13079 5.19211 5.39455 5.48452 5.50887 5.83666 5.99036 6.26916 6.32819 6.44987 6.69167 6.94152 7.24751 8.82327 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.038064 B = 0.010085 C = 0.008301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.427210 B = 2775.804487 C = 3372.398558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.018 3.982 3 Si 0.939 3.061 4 H -0.253 1.253 5 H -0.257 1.257 6 H -0.288 1.288 7 C -0.505 4.505 8 H 0.043 0.957 9 C 0.218 3.782 10 H 0.001 0.999 11 N -0.692 5.692 12 C 0.038 3.962 13 C -0.066 4.066 14 C -0.074 4.074 15 C -0.149 4.149 16 C 0.095 3.905 17 O -0.504 6.504 18 C -0.159 4.159 19 C -0.103 4.103 20 C -0.076 4.076 21 H 0.268 0.732 22 H 0.318 0.682 23 H 0.097 0.903 24 H 0.030 0.970 25 H 0.083 0.917 26 H 0.109 0.891 27 H 0.152 0.848 28 H 0.408 0.592 29 H 0.138 0.862 30 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.242 -4.894 -0.097 16.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.180 4.180 3 Si 0.765 3.235 4 H -0.178 1.178 5 H -0.182 1.182 6 H -0.215 1.215 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.111 3.889 10 H 0.018 0.982 11 N -0.329 5.329 12 C -0.091 4.091 13 C -0.103 4.103 14 C -0.075 4.075 15 C -0.167 4.167 16 C 0.050 3.950 17 O -0.317 6.317 18 C -0.177 4.177 19 C -0.122 4.122 20 C -0.077 4.077 21 H 0.077 0.923 22 H 0.140 0.860 23 H 0.115 0.885 24 H 0.048 0.952 25 H 0.101 0.899 26 H 0.127 0.873 27 H 0.169 0.831 28 H 0.266 0.734 29 H 0.156 0.844 30 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 14.556 -5.386 0.780 15.540 hybrid contribution -0.042 1.434 -1.236 1.893 sum 14.514 -3.952 -0.456 15.049 Atomic orbital electron populations 1.70025 1.08006 1.28182 1.51841 1.25862 0.95562 1.02875 0.93736 0.85950 0.78922 0.79167 0.79442 1.17799 1.18151 1.21456 1.21209 0.89710 0.93549 1.49871 0.93899 1.18274 0.93680 0.89410 0.87552 0.98193 1.61318 1.11885 1.16485 1.43225 1.22215 0.88134 0.98255 1.00483 1.20561 1.00174 0.91558 0.98036 1.19788 0.95486 0.95104 0.97093 1.21452 1.02088 0.91707 1.01430 1.18324 0.95355 0.84014 0.97282 1.84767 1.61606 1.22731 1.62555 1.21456 0.99219 0.95572 1.01462 1.21094 0.98920 0.93126 0.99041 1.19868 0.95169 0.95922 0.96742 0.92272 0.85994 0.88495 0.95166 0.89899 0.87314 0.83079 0.73379 0.84371 0.87005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.64 13.96 21.45 0.30 -58.34 16 2 C 0.02 1.06 5.47 84.66 0.46 1.53 16 3 Si 0.94 43.56 24.58 68.60 1.69 45.24 16 4 H -0.25 -10.96 7.01 99.48 0.70 -10.26 16 5 H -0.26 -11.14 6.54 99.48 0.65 -10.49 16 6 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 7 C -0.50 -29.31 8.56 25.60 0.22 -29.09 16 8 H 0.04 2.76 6.96 -2.91 -0.02 2.74 16 9 C 0.22 10.63 2.00 43.46 0.09 10.71 16 10 H 0.00 0.05 7.19 -2.39 -0.02 0.03 16 11 N -0.69 -30.43 6.39 -499.65 -3.19 -33.62 16 12 C 0.04 1.25 6.58 86.22 0.57 1.81 16 13 C -0.07 -1.94 5.94 29.82 0.18 -1.76 16 14 C -0.07 -2.65 5.77 -19.86 -0.11 -2.76 16 15 C -0.15 -4.50 9.59 22.42 0.22 -4.28 16 16 C 0.09 2.91 6.70 22.46 0.15 3.06 16 17 O -0.50 -12.43 13.51 -92.41 -1.25 -13.68 16 18 C -0.16 -5.48 9.99 22.32 0.22 -5.26 16 19 C -0.10 -4.33 8.72 22.32 0.19 -4.13 16 20 C -0.08 -3.32 5.47 -19.84 -0.11 -3.43 16 21 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 22 H 0.32 13.97 4.03 -89.69 -0.36 13.61 16 23 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 24 H 0.03 0.97 8.05 -2.38 -0.02 0.95 16 25 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 28 H 0.41 5.46 9.06 -74.06 -0.67 4.79 16 29 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 30 H 0.11 5.08 7.08 -2.91 -0.02 5.05 16 Total: -1.00 -70.08 245.11 -0.31 -70.39 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 0.07 Total: 23.61 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 2.07 Total: -33.61 kcal Atomic # 7 Polarization: -89.07 SS G_CDS: -2.89 Total: -91.96 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -1.25 Total: -13.68 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.69 Total: 45.24 kcal Total: -70.08 -0.31 -70.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083660416.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.570 kcal (2) G-P(sol) polarization free energy of solvation -70.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds