Wall clock time and date at job start Mon Mar 30 2020 02:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86789 * 120.00192 * 2 1 4 4 H 1.48506 * 109.47200 * 269.99683 * 3 2 1 5 5 H 1.48505 * 109.47499 * 29.99744 * 3 2 1 6 6 H 1.48500 * 109.47262 * 150.00006 * 3 2 1 7 7 C 1.37879 * 119.99350 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00409 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99394 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.26807 * 60.49628 * 9 7 2 11 11 N 1.46626 * 109.26659 * 301.02050 * 9 7 2 12 12 C 1.47185 * 110.24930 * 187.25154 * 11 9 7 13 13 C 1.52895 * 108.47713 * 71.31993 * 12 11 9 14 14 C 1.50732 * 109.94945 * 309.55645 * 13 12 11 15 15 C 1.38595 * 118.42718 * 196.78653 * 14 13 12 16 16 C 1.38524 * 120.30549 * 180.19676 * 15 14 13 17 17 O 1.35903 * 120.14334 * 180.02562 * 16 15 14 18 18 C 1.38759 * 119.71071 * 0.02562 * 16 15 14 19 19 C 1.37917 * 119.80659 * 359.92482 * 18 16 15 20 20 C 1.37882 * 121.66226 * 16.86702 * 14 13 12 21 21 H 0.97005 * 119.99656 * 0.02562 * 1 2 3 22 22 H 1.00897 * 110.99775 * 310.66711 * 11 9 7 23 23 H 1.09005 * 109.64608 * 311.61855 * 12 11 9 24 24 H 1.09000 * 109.79116 * 191.11273 * 12 11 9 25 25 H 1.08995 * 109.38607 * 189.40976 * 13 12 11 26 26 H 1.08998 * 109.38881 * 69.70629 * 13 12 11 27 27 H 1.07997 * 119.84964 * 0.22081 * 15 14 13 28 28 H 0.96703 * 114.00421 * 90.00442 * 17 16 15 29 29 H 1.07994 * 120.09820 * 179.90580 * 18 16 15 30 30 H 1.08002 * 119.76819 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 1 3.8708 -0.6872 0.8966 11 7 3.9957 -0.4811 -1.1850 12 6 5.4570 -0.6156 -1.2990 13 6 5.7813 -2.0549 -1.7005 14 6 5.0661 -3.0172 -0.7869 15 6 5.4937 -4.3350 -0.7518 16 6 4.8618 -5.2532 0.0707 17 8 5.2842 -6.5446 0.1030 18 6 3.7957 -4.8488 0.8614 19 6 3.3739 -3.5362 0.8243 20 6 4.0085 -2.6162 0.0016 21 1 -0.4850 0.8401 -0.0004 22 1 3.5359 -0.8133 -2.0194 23 1 5.9218 -0.3895 -0.3393 24 1 5.8326 0.0700 -2.0585 25 1 6.8565 -2.2174 -1.6271 26 1 5.4603 -2.2249 -2.7281 27 1 6.3236 -4.6475 -1.3681 28 1 5.9666 -6.7188 0.7656 29 1 3.2975 -5.5597 1.5038 30 1 2.5438 -3.2222 1.4398 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083660417.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:12 Heat of formation + Delta-G solvation = -20.834440 kcal Electronic energy + Delta-G solvation = -14705.419554 eV Core-core repulsion = 12272.192813 eV Total energy + Delta-G solvation = -2433.226742 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.79279 -37.63023 -34.99027 -33.21043 -31.50636 -29.48853 -28.47536 -25.54436 -22.78274 -22.65553 -21.04361 -19.71302 -17.62343 -16.95498 -15.68817 -15.29402 -15.05332 -14.50875 -14.10790 -13.51949 -13.23341 -12.89684 -12.71262 -12.26878 -12.13724 -11.64291 -11.45599 -11.04956 -10.70266 -10.60190 -10.26458 -10.03899 -9.79181 -9.25707 -8.59741 -8.31078 -7.80105 -7.54274 -6.07454 -4.18758 1.74571 1.81864 3.53552 3.57298 3.71680 4.08437 4.51503 4.58648 5.00622 5.14362 5.32634 5.42413 5.54659 5.60426 5.72062 5.82756 5.87769 6.14750 6.21961 6.31755 6.40273 6.54924 6.80262 6.85521 6.96970 7.09540 7.31435 7.60971 7.92974 8.03502 8.14566 8.57220 8.91470 9.53960 11.01162 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.038034 B = 0.010095 C = 0.008319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.999215 B = 2772.894842 C = 3365.082563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.081 3.919 3 Si 0.931 3.069 4 H -0.279 1.279 5 H -0.317 1.317 6 H -0.270 1.270 7 C -0.525 4.525 8 H 0.078 0.922 9 C 0.211 3.789 10 H 0.057 0.943 11 N -0.679 5.679 12 C 0.049 3.951 13 C -0.111 4.111 14 C -0.082 4.082 15 C -0.151 4.151 16 C 0.079 3.921 17 O -0.503 6.503 18 C -0.154 4.154 19 C -0.081 4.081 20 C -0.072 4.072 21 H 0.265 0.735 22 H 0.342 0.658 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.116 0.884 28 H 0.380 0.620 29 H 0.120 0.880 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.851 -5.558 0.002 13.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.123 4.123 3 Si 0.763 3.237 4 H -0.205 1.205 5 H -0.246 1.246 6 H -0.195 1.195 7 C -0.563 4.563 8 H 0.096 0.904 9 C 0.104 3.896 10 H 0.074 0.926 11 N -0.309 5.309 12 C -0.081 4.081 13 C -0.150 4.150 14 C -0.082 4.082 15 C -0.169 4.169 16 C 0.035 3.965 17 O -0.312 6.312 18 C -0.172 4.172 19 C -0.099 4.099 20 C -0.074 4.074 21 H 0.074 0.926 22 H 0.161 0.839 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.134 0.866 28 H 0.234 0.766 29 H 0.138 0.862 30 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 11.299 -4.891 -0.154 12.313 hybrid contribution 0.807 -0.268 -0.022 0.850 sum 12.105 -5.160 -0.176 13.160 Atomic orbital electron populations 1.69949 1.06786 1.27512 1.48906 1.25061 0.94670 1.00096 0.92518 0.85934 0.78650 0.80835 0.78320 1.20538 1.24615 1.19550 1.20956 0.87109 0.94860 1.53408 0.90415 1.18719 0.96246 0.84144 0.90504 0.92566 1.61385 1.02263 1.59457 1.07817 1.22066 0.91834 0.93130 1.01105 1.21154 0.99328 0.96306 0.98203 1.19502 0.96664 0.93598 0.98460 1.21160 1.01453 0.92751 1.01555 1.18302 0.96400 0.83189 0.98625 1.84831 1.60314 1.24597 1.61479 1.21373 0.98521 0.96766 1.00588 1.21258 0.98830 0.91461 0.98388 1.20884 0.92967 0.99389 0.94177 0.92567 0.83934 0.91526 0.91359 0.91344 0.91023 0.86594 0.76599 0.86210 0.84448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.79 13.96 55.43 0.77 -26.01 16 2 C 0.08 2.28 5.47 -17.82 -0.10 2.19 16 3 Si 0.93 23.08 25.96 -169.99 -4.41 18.67 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.32 -7.97 7.11 56.52 0.40 -7.57 16 6 H -0.27 -6.54 6.56 56.52 0.37 -6.17 16 7 C -0.53 -14.12 8.42 -34.44 -0.29 -14.41 16 8 H 0.08 2.27 6.95 -52.49 -0.36 1.90 16 9 C 0.21 4.82 1.90 -70.19 -0.13 4.69 16 10 H 0.06 1.35 7.23 -51.93 -0.38 0.97 16 11 N -0.68 -14.24 4.06 -109.26 -0.44 -14.68 16 12 C 0.05 0.82 6.62 -3.72 -0.02 0.79 16 13 C -0.11 -1.71 5.82 -27.92 -0.16 -1.87 16 14 C -0.08 -1.47 5.77 -104.61 -0.60 -2.08 16 15 C -0.15 -2.50 9.59 -39.34 -0.38 -2.88 16 16 C 0.08 1.31 6.70 -39.28 -0.26 1.04 16 17 O -0.50 -7.18 13.51 -19.43 -0.26 -7.45 16 18 C -0.15 -2.68 9.99 -39.51 -0.39 -3.07 16 19 C -0.08 -1.60 8.72 -39.50 -0.34 -1.94 16 20 C -0.07 -1.48 5.47 -104.58 -0.57 -2.06 16 21 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 22 H 0.34 7.22 8.54 -39.29 -0.34 6.89 16 23 H 0.07 1.12 8.05 -51.93 -0.42 0.70 16 24 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 28 H 0.38 3.41 9.06 45.56 0.41 3.82 16 29 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.14 2.82 7.08 -52.49 -0.37 2.44 16 LS Contribution 248.49 15.07 3.74 3.74 Total: -1.00 -30.74 248.49 -6.60 -37.33 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -2.73 Total: 7.99 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -3.26 Total: -19.59 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.33 Total: -40.69 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: -0.26 Total: -7.45 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -4.41 Total: 18.67 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.74 -6.60 -37.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083660417.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.499 kcal (2) G-P(sol) polarization free energy of solvation -30.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds