Wall clock time and date at job start Mon Mar 30 2020 02:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86789 * 120.00192 * 2 1 4 4 H 1.48506 * 109.47200 * 269.99683 * 3 2 1 5 5 H 1.48505 * 109.47499 * 29.99744 * 3 2 1 6 6 H 1.48500 * 109.47262 * 150.00006 * 3 2 1 7 7 C 1.37879 * 119.99350 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00409 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99394 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.26807 * 60.49628 * 9 7 2 11 11 N 1.46626 * 109.26659 * 301.02050 * 9 7 2 12 12 C 1.47185 * 110.24930 * 187.25154 * 11 9 7 13 13 C 1.52895 * 108.47713 * 71.31993 * 12 11 9 14 14 C 1.50732 * 109.94945 * 309.55645 * 13 12 11 15 15 C 1.38595 * 118.42718 * 196.78653 * 14 13 12 16 16 C 1.38524 * 120.30549 * 180.19676 * 15 14 13 17 17 O 1.35903 * 120.14334 * 180.02562 * 16 15 14 18 18 C 1.38759 * 119.71071 * 0.02562 * 16 15 14 19 19 C 1.37917 * 119.80659 * 359.92482 * 18 16 15 20 20 C 1.37882 * 121.66226 * 16.86702 * 14 13 12 21 21 H 0.97005 * 119.99656 * 0.02562 * 1 2 3 22 22 H 1.00897 * 110.99775 * 310.66711 * 11 9 7 23 23 H 1.09005 * 109.64608 * 311.61855 * 12 11 9 24 24 H 1.09000 * 109.79116 * 191.11273 * 12 11 9 25 25 H 1.08995 * 109.38607 * 189.40976 * 13 12 11 26 26 H 1.08998 * 109.38881 * 69.70629 * 13 12 11 27 27 H 1.07997 * 119.84964 * 0.22081 * 15 14 13 28 28 H 0.96703 * 114.00421 * 90.00442 * 17 16 15 29 29 H 1.07994 * 120.09820 * 179.90580 * 18 16 15 30 30 H 1.08002 * 119.76819 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 1 3.8708 -0.6872 0.8966 11 7 3.9957 -0.4811 -1.1850 12 6 5.4570 -0.6156 -1.2990 13 6 5.7813 -2.0549 -1.7005 14 6 5.0661 -3.0172 -0.7869 15 6 5.4937 -4.3350 -0.7518 16 6 4.8618 -5.2532 0.0707 17 8 5.2842 -6.5446 0.1030 18 6 3.7957 -4.8488 0.8614 19 6 3.3739 -3.5362 0.8243 20 6 4.0085 -2.6162 0.0016 21 1 -0.4850 0.8401 -0.0004 22 1 3.5359 -0.8133 -2.0194 23 1 5.9218 -0.3895 -0.3393 24 1 5.8326 0.0700 -2.0585 25 1 6.8565 -2.2174 -1.6271 26 1 5.4603 -2.2249 -2.7281 27 1 6.3236 -4.6475 -1.3681 28 1 5.9666 -6.7188 0.7656 29 1 3.2975 -5.5597 1.5038 30 1 2.5438 -3.2222 1.4398 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083660417.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:12 Heat of formation + Delta-G solvation = -43.791038 kcal Electronic energy + Delta-G solvation = -14706.415027 eV Core-core repulsion = 12272.192813 eV Total energy + Delta-G solvation = -2434.222215 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.18915 -38.94981 -36.38536 -35.01868 -33.27686 -30.95768 -29.89268 -27.36097 -24.22163 -24.14275 -22.62543 -21.13088 -19.03028 -18.78762 -17.20452 -16.75722 -16.46023 -16.18117 -15.55330 -15.06133 -14.79894 -14.41399 -14.33549 -13.87828 -13.52742 -13.20329 -12.91084 -12.71193 -12.26391 -12.09115 -11.99562 -11.71416 -11.52563 -11.07069 -10.74666 -9.67411 -9.26587 -9.11555 -8.24827 -6.38236 0.36652 0.43694 1.51864 1.57648 1.72853 2.52062 2.71774 3.06786 3.30032 3.75469 3.86673 4.04522 4.17465 4.25293 4.31583 4.50224 4.67508 4.74345 4.93884 5.02993 5.09831 5.12027 5.22776 5.42348 5.46731 5.51435 5.83436 5.98374 6.15190 6.38003 6.75149 6.78106 6.89917 7.37369 8.87401 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.038034 B = 0.010095 C = 0.008319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.999215 B = 2772.894842 C = 3365.082563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.028 3.972 3 Si 0.995 3.005 4 H -0.273 1.273 5 H -0.323 1.323 6 H -0.261 1.261 7 C -0.519 4.519 8 H 0.039 0.961 9 C 0.222 3.778 10 H 0.041 0.959 11 N -0.692 5.692 12 C 0.047 3.953 13 C -0.105 4.105 14 C -0.081 4.081 15 C -0.149 4.149 16 C 0.092 3.908 17 O -0.505 6.505 18 C -0.160 4.160 19 C -0.100 4.100 20 C -0.106 4.106 21 H 0.265 0.735 22 H 0.339 0.661 23 H 0.065 0.935 24 H 0.096 0.904 25 H 0.103 0.897 26 H 0.083 0.917 27 H 0.148 0.852 28 H 0.407 0.593 29 H 0.136 0.864 30 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.090 -6.214 -1.038 16.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.171 4.171 3 Si 0.825 3.175 4 H -0.198 1.198 5 H -0.254 1.254 6 H -0.185 1.185 7 C -0.558 4.558 8 H 0.057 0.943 9 C 0.113 3.887 10 H 0.059 0.941 11 N -0.322 5.322 12 C -0.082 4.082 13 C -0.143 4.143 14 C -0.082 4.082 15 C -0.167 4.167 16 C 0.048 3.952 17 O -0.318 6.318 18 C -0.179 4.179 19 C -0.119 4.119 20 C -0.108 4.108 21 H 0.074 0.926 22 H 0.158 0.842 23 H 0.084 0.916 24 H 0.114 0.886 25 H 0.122 0.878 26 H 0.101 0.899 27 H 0.166 0.834 28 H 0.266 0.734 29 H 0.153 0.847 30 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 14.581 -5.570 -1.182 15.654 hybrid contribution -0.146 -0.263 0.323 0.442 sum 14.436 -5.834 -0.858 15.593 Atomic orbital electron populations 1.70078 1.08489 1.28225 1.51631 1.25856 0.95195 1.03478 0.92607 0.84911 0.77478 0.76685 0.78433 1.19849 1.25360 1.18543 1.21173 0.89799 0.93127 1.51661 0.94264 1.18324 0.93309 0.86192 0.90841 0.94127 1.61121 1.05168 1.59127 1.06737 1.22208 0.88706 0.95098 1.02154 1.21166 1.01067 0.94227 0.97855 1.19786 0.95611 0.95029 0.97737 1.21451 1.01941 0.91899 1.01401 1.18347 0.95453 0.84014 0.97366 1.84764 1.61436 1.22932 1.62663 1.21501 0.99165 0.95900 1.01289 1.21140 0.98850 0.92982 0.98949 1.20729 0.95246 0.98192 0.96628 0.92606 0.84245 0.91627 0.88559 0.87841 0.89877 0.83449 0.73409 0.84652 0.87063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.94 13.96 21.45 0.30 -58.64 16 2 C 0.03 1.62 5.47 84.66 0.46 2.08 16 3 Si 1.00 48.46 25.96 68.60 1.78 50.24 16 4 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 5 H -0.32 -15.95 7.11 99.48 0.71 -15.24 16 6 H -0.26 -12.13 6.56 99.48 0.65 -11.48 16 7 C -0.52 -29.13 8.42 25.60 0.22 -28.92 16 8 H 0.04 2.44 6.95 -2.91 -0.02 2.42 16 9 C 0.22 10.22 1.90 43.46 0.08 10.30 16 10 H 0.04 1.98 7.23 -2.39 -0.02 1.97 16 11 N -0.69 -28.06 4.06 -499.57 -2.03 -30.09 16 12 C 0.05 1.43 6.62 86.21 0.57 2.00 16 13 C -0.10 -2.78 5.82 29.82 0.17 -2.60 16 14 C -0.08 -2.71 5.77 -19.85 -0.11 -2.82 16 15 C -0.15 -4.35 9.59 22.42 0.22 -4.14 16 16 C 0.09 2.80 6.70 22.46 0.15 2.95 16 17 O -0.51 -12.39 13.51 -92.45 -1.25 -13.64 16 18 C -0.16 -5.43 9.99 22.32 0.22 -5.21 16 19 C -0.10 -4.08 8.72 22.32 0.19 -3.89 16 20 C -0.11 -4.34 5.47 -19.84 -0.11 -4.45 16 21 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 22 H 0.34 13.99 8.54 -89.70 -0.77 13.23 16 23 H 0.07 2.01 8.05 -2.38 -0.02 1.99 16 24 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 25 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 28 H 0.41 5.49 9.06 -74.06 -0.67 4.82 16 29 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 30 H 0.11 4.95 7.08 -2.91 -0.02 4.93 16 Total: -1.00 -68.18 248.49 0.54 -67.64 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -0.32 Total: 19.17 kcal Atomic # 6 Polarization: -36.75 SS G_CDS: 2.07 Total: -34.69 kcal Atomic # 7 Polarization: -87.00 SS G_CDS: -1.73 Total: -88.73 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -1.25 Total: -13.64 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 1.78 Total: 50.24 kcal Total: -68.18 0.54 -67.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083660417.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.852 kcal (2) G-P(sol) polarization free energy of solvation -68.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds