Wall clock time and date at job start Mon Mar 30 2020 03:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47140 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47531 * 300.00639 * 3 2 1 6 6 H 1.48501 * 109.46697 * 60.00815 * 3 2 1 7 7 C 1.37877 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99893 * 197.42299 * 7 2 1 9 9 C 1.50690 * 120.00224 * 17.42351 * 7 2 1 10 10 C 1.53002 * 115.55094 * 39.91478 * 9 7 2 11 11 N 1.46499 * 109.46938 * 80.27919 * 10 9 7 12 12 C 1.35603 * 119.26405 * 273.71789 * 11 10 9 13 13 C 1.35093 * 120.69993 * 179.71745 * 12 11 10 14 14 C 1.41482 * 119.24101 * 0.54728 * 13 12 11 15 15 O 1.22251 * 120.67475 * 179.75040 * 14 13 12 16 16 C 1.41478 * 118.64129 * 359.72876 * 14 13 12 17 17 C 1.35092 * 119.24763 * 0.02562 * 16 14 13 18 18 C 1.53001 * 117.50171 * 185.58736 * 9 7 2 19 19 C 1.53007 * 60.03400 * 107.49893 * 18 9 7 20 20 H 0.96998 * 120.00107 * 4.63440 * 1 2 3 21 21 H 1.09001 * 109.47240 * 200.27794 * 10 9 7 22 22 H 1.08994 * 109.47106 * 320.27598 * 10 9 7 23 23 H 1.08000 * 119.64969 * 359.97438 * 12 11 10 24 24 H 1.07999 * 120.37708 * 180.27932 * 13 12 11 25 25 H 1.08002 * 120.37553 * 179.97438 * 16 14 13 26 26 H 1.07998 * 119.65040 * 180.02562 * 17 16 14 27 27 H 1.09002 * 117.50288 * 215.00180 * 18 9 7 28 28 H 1.09000 * 117.49526 * 0.02562 * 18 9 7 29 29 H 1.09004 * 117.49373 * 107.49771 * 19 18 9 30 30 H 1.08990 * 117.50087 * 252.52454 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0474 -1.2156 0.2795 9 6 1.3030 -2.4690 -0.3919 10 6 0.3295 -2.3528 -1.5665 11 7 1.0782 -2.3785 -2.8255 12 6 1.5813 -1.2210 -3.3214 13 6 2.2810 -1.2122 -4.4770 14 6 2.4761 -2.4266 -5.1761 15 8 3.1012 -2.4481 -6.2265 16 6 1.9333 -3.6156 -4.6345 17 6 1.2475 -3.5584 -3.4720 18 6 2.0827 -3.7774 -0.2474 19 6 0.9479 -3.4525 0.7261 20 1 -0.4850 0.8373 -0.0679 21 1 -0.3701 -3.1883 -1.5427 22 1 -0.2213 -1.4154 -1.4905 23 1 1.4243 -0.2970 -2.7848 24 1 2.6831 -0.2880 -4.8649 25 1 2.0651 -4.5582 -5.1451 26 1 0.8308 -4.4622 -3.0525 27 1 1.9023 -4.5555 -0.9891 28 1 3.1030 -3.7161 0.1312 29 1 0.0208 -4.0168 0.6247 30 1 1.2218 -3.1770 1.7445 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862415.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:45 Heat of formation + Delta-G solvation = 6.621209 kcal Electronic energy + Delta-G solvation = -14751.274170 eV Core-core repulsion = 12319.237994 eV Total energy + Delta-G solvation = -2432.036175 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.83325 -39.18221 -37.69255 -34.33119 -32.93052 -32.55987 -28.02017 -27.16692 -24.60173 -23.60521 -22.94333 -21.26374 -18.74131 -18.02373 -17.70763 -17.17923 -16.65409 -16.16829 -15.54725 -15.25273 -14.94555 -14.77972 -14.15197 -13.61485 -13.41410 -13.24442 -13.12574 -12.82471 -12.53298 -12.29318 -12.09390 -11.36520 -11.15733 -10.66716 -10.50074 -10.29727 -10.08434 -8.82936 -8.25198 -6.24273 0.47612 0.54306 1.35150 1.46580 1.53092 1.85136 2.38391 2.90649 2.94056 3.54861 3.76382 3.94748 4.13381 4.17446 4.25816 4.49620 4.58954 4.63395 4.74778 4.94887 4.98181 5.04427 5.20271 5.25260 5.42559 5.56746 5.62997 5.77875 6.00911 6.20197 6.35843 6.71880 7.24772 7.36193 8.79488 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.026185 B = 0.011767 C = 0.009086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.060394 B = 2378.973009 C = 3081.061198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.047 3.953 3 Si 0.916 3.084 4 H -0.279 1.279 5 H -0.268 1.268 6 H -0.286 1.286 7 C -0.501 4.501 8 H 0.042 0.958 9 C 0.001 3.999 10 C 0.116 3.884 11 N -0.442 5.442 12 C 0.182 3.818 13 C -0.330 4.330 14 C 0.369 3.631 15 O -0.617 6.617 16 C -0.319 4.319 17 C 0.164 3.836 18 C -0.189 4.189 19 C -0.182 4.182 20 H 0.269 0.731 21 H 0.102 0.898 22 H 0.119 0.881 23 H 0.156 0.844 24 H 0.137 0.863 25 H 0.155 0.845 26 H 0.201 0.799 27 H 0.100 0.900 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.441 -5.061 -0.207 6.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.155 4.155 3 Si 0.743 3.257 4 H -0.204 1.204 5 H -0.193 1.193 6 H -0.212 1.212 7 C -0.538 4.538 8 H 0.060 0.940 9 C 0.000 4.000 10 C -0.003 4.003 11 N -0.124 5.124 12 C 0.051 3.949 13 C -0.354 4.354 14 C 0.270 3.730 15 O -0.513 6.513 16 C -0.343 4.343 17 C 0.034 3.966 18 C -0.226 4.226 19 C -0.220 4.220 20 H 0.078 0.922 21 H 0.120 0.880 22 H 0.136 0.864 23 H 0.174 0.826 24 H 0.155 0.845 25 H 0.172 0.828 26 H 0.218 0.782 27 H 0.118 0.882 28 H 0.084 0.916 29 H 0.113 0.887 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.433 -4.922 -0.438 6.017 hybrid contribution 0.761 1.240 0.327 1.491 sum -2.672 -3.682 -0.111 4.551 Atomic orbital electron populations 1.69943 1.06179 1.28013 1.48251 1.25221 0.95172 1.00518 0.94567 0.86162 0.79543 0.81789 0.78245 1.20435 1.19307 1.21235 1.20703 0.95686 0.91845 1.45608 0.93988 1.19336 0.97347 0.89093 0.94199 1.22154 0.92743 1.06934 0.78517 1.43712 1.42692 1.05448 1.20507 1.21846 0.89883 0.90771 0.92382 1.22328 1.11512 1.01523 1.00026 1.17692 0.79603 0.90183 0.85539 1.90681 1.44088 1.90158 1.26417 1.22312 1.10253 1.01092 1.00667 1.22410 0.93183 0.89676 0.91297 1.22915 0.95820 1.00390 1.03487 1.22990 0.98446 1.05116 0.95462 0.92157 0.87997 0.86370 0.82632 0.84503 0.82787 0.78203 0.88187 0.91556 0.88727 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -40.50 11.14 21.45 0.24 -40.26 16 2 C 0.05 2.14 4.68 84.65 0.40 2.53 16 3 Si 0.92 37.72 29.58 68.60 2.03 39.75 16 4 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 6 H -0.29 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.50 -23.09 8.75 25.60 0.22 -22.87 16 8 H 0.04 2.08 7.88 -2.91 -0.02 2.06 16 9 C 0.00 0.05 1.86 -52.90 -0.10 -0.05 16 10 C 0.12 3.86 5.27 86.38 0.45 4.31 16 11 N -0.44 -14.13 2.58 -525.40 -1.36 -15.48 16 12 C 0.18 6.49 10.01 83.39 0.83 7.32 16 13 C -0.33 -12.63 10.01 22.34 0.22 -12.41 16 14 C 0.37 15.31 6.77 23.87 0.16 15.47 16 15 O -0.62 -30.54 17.90 -6.14 -0.11 -30.65 16 16 C -0.32 -10.37 10.01 22.34 0.22 -10.15 16 17 C 0.16 4.44 9.48 83.39 0.79 5.23 16 18 C -0.19 -6.33 9.71 30.60 0.30 -6.03 16 19 C -0.18 -6.37 9.89 30.62 0.30 -6.07 16 20 H 0.27 11.80 8.32 -92.71 -0.77 11.03 16 21 H 0.10 2.68 7.73 -2.39 -0.02 2.66 16 22 H 0.12 4.51 5.43 -2.39 -0.01 4.50 16 23 H 0.16 5.69 7.62 -2.91 -0.02 5.66 16 24 H 0.14 5.07 8.06 -2.91 -0.02 5.05 16 25 H 0.15 4.40 8.06 -2.91 -0.02 4.38 16 26 H 0.20 3.51 7.78 -2.91 -0.02 3.48 16 27 H 0.10 2.72 7.36 -2.39 -0.02 2.70 16 28 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.09 2.81 8.09 -2.39 -0.02 2.80 16 30 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -58.29 261.53 5.74 -52.55 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 1.13 Total: 16.80 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 3.81 Total: -22.71 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -1.12 Total: -55.74 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.11 Total: -30.65 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 2.03 Total: 39.75 kcal Total: -58.29 5.74 -52.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862415.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.173 kcal (2) G-P(sol) polarization free energy of solvation -58.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds