Wall clock time and date at job start Mon Mar 30 2020 02:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99966 * 2 1 4 4 H 1.48500 * 109.47074 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47406 * 299.99662 * 3 2 1 6 6 H 1.48500 * 109.47264 * 59.99843 * 3 2 1 7 7 C 1.37877 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00066 * 184.93316 * 7 2 1 9 9 C 1.50698 * 119.99935 * 4.94389 * 7 2 1 10 10 N 1.46897 * 109.43887 * 54.76440 * 9 7 2 11 11 C 1.53075 * 109.40053 * 294.87352 * 9 7 2 12 12 C 1.53401 * 108.30129 * 191.76621 * 11 9 7 13 13 O 1.42824 * 108.37835 * 64.71653 * 12 11 9 14 14 C 1.35839 * 117.85868 * 310.81942 * 13 12 11 15 15 C 1.39151 * 118.50187 * 197.06501 * 14 13 12 16 16 C 1.37964 * 120.21716 * 180.28163 * 15 14 13 17 17 C 1.38291 * 119.95889 * 359.73080 * 16 15 14 18 18 C 1.38104 * 119.97972 * 0.42018 * 17 16 15 19 19 C 1.38373 * 121.80792 * 17.20499 * 14 13 12 20 20 H 0.97001 * 119.99755 * 0.02562 * 1 2 3 21 21 H 1.00903 * 110.99879 * 59.92067 * 10 9 7 22 22 H 1.00902 * 110.99853 * 183.86805 * 10 9 7 23 23 H 1.09000 * 109.69551 * 311.47026 * 11 9 7 24 24 H 1.09008 * 109.69653 * 72.05985 * 11 9 7 25 25 H 1.09004 * 109.68295 * 184.43555 * 12 11 9 26 26 H 1.08998 * 109.68577 * 304.95808 * 12 11 9 27 27 H 1.08004 * 119.88720 * 0.31364 * 15 14 13 28 28 H 1.08000 * 120.02255 * 179.97438 * 16 15 14 29 29 H 1.08000 * 120.00865 * 180.16778 * 17 16 15 30 30 H 1.08008 * 119.83728 * 179.83360 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0815 -1.1958 0.0810 9 6 1.2552 -2.4967 -0.1114 10 7 0.4057 -2.4708 -1.3095 11 6 0.3796 -2.6879 1.1296 12 6 -0.1367 -4.1324 1.1370 13 8 0.9806 -5.0093 1.2867 14 6 2.0514 -4.8176 0.4732 15 6 2.9790 -5.8466 0.3429 16 6 4.0828 -5.6878 -0.4694 17 6 4.2664 -4.5046 -1.1614 18 6 3.3495 -3.4800 -1.0321 19 6 2.2393 -3.6339 -0.2185 20 1 -0.4850 0.8401 -0.0004 21 1 0.9598 -2.3421 -2.1429 22 1 -0.1548 -3.3073 -1.3736 23 1 0.9698 -2.5041 2.0274 24 1 -0.4626 -1.9967 1.0951 25 1 -0.8266 -4.2714 1.9694 26 1 -0.6473 -4.3446 0.1976 27 1 2.8341 -6.7729 0.8791 28 1 4.8009 -6.4884 -0.5679 29 1 5.1288 -4.3804 -1.7997 30 1 3.4966 -2.5560 -1.5715 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084348298.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:07 Heat of formation + Delta-G solvation = -9.782896 kcal Electronic energy + Delta-G solvation = -15120.137795 eV Core-core repulsion = 12687.390284 eV Total energy + Delta-G solvation = -2432.747511 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.98596 -36.77041 -35.32351 -31.71768 -29.93089 -29.64601 -28.55975 -25.90002 -23.28161 -22.42954 -21.34132 -18.52911 -17.07846 -16.48008 -15.74471 -15.25507 -14.64424 -14.28741 -13.91882 -13.52481 -13.08948 -12.92035 -12.67450 -11.96800 -11.79040 -11.18190 -10.96310 -10.83098 -10.64570 -10.52884 -10.05115 -9.91093 -9.74167 -8.98072 -8.37448 -8.16339 -7.58958 -7.04831 -5.92548 -4.06738 2.01989 2.07922 3.29062 3.38135 3.41579 4.01430 4.38894 4.49135 5.29535 5.48137 5.55044 5.71123 5.75591 5.89034 5.99842 6.06934 6.11637 6.22207 6.34702 6.67806 6.86736 6.95195 7.06413 7.14385 7.32539 7.48841 7.72789 7.89387 8.14627 8.19529 8.55450 8.91094 9.07728 9.61263 11.09367 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.032813 B = 0.011736 C = 0.009550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.110493 B = 2385.233711 C = 2931.175216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.087 3.913 3 Si 0.882 3.118 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.285 3.715 10 N -0.799 5.799 11 C -0.133 4.133 12 C 0.051 3.949 13 O -0.329 6.329 14 C 0.124 3.876 15 C -0.166 4.166 16 C -0.106 4.106 17 C -0.169 4.169 18 C -0.069 4.069 19 C -0.155 4.155 20 H 0.255 0.745 21 H 0.322 0.678 22 H 0.295 0.705 23 H 0.057 0.943 24 H 0.109 0.891 25 H 0.090 0.910 26 H 0.053 0.947 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.651 -7.534 -0.832 8.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.119 4.119 3 Si 0.710 3.290 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.565 4.565 8 H 0.076 0.924 9 C 0.194 3.806 10 N -0.325 5.325 11 C -0.171 4.171 12 C -0.024 4.024 13 O -0.244 6.244 14 C 0.078 3.922 15 C -0.185 4.185 16 C -0.125 4.125 17 C -0.188 4.188 18 C -0.088 4.088 19 C -0.158 4.158 20 H 0.065 0.935 21 H 0.134 0.866 22 H 0.106 0.894 23 H 0.075 0.925 24 H 0.127 0.873 25 H 0.108 0.892 26 H 0.072 0.928 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.130 0.870 30 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.072 -6.878 -0.355 7.192 hybrid contribution 1.017 0.249 -0.364 1.108 sum 3.088 -6.629 -0.720 7.349 Atomic orbital electron populations 1.70038 1.05590 1.25501 1.46550 1.24902 0.94653 0.98431 0.93958 0.86722 0.80369 0.84414 0.77508 1.19896 1.21024 1.21179 1.20870 0.92586 0.89158 1.53881 0.92401 1.17304 0.86122 0.89308 0.87826 1.59293 1.27875 1.40856 1.04426 1.22328 1.02648 0.92937 0.99187 1.23227 0.85982 0.92020 1.01135 1.85853 1.24956 1.56868 1.56702 1.18886 0.88261 0.93282 0.91775 1.20446 0.96317 0.98107 1.03595 1.20687 0.96897 0.97567 0.97317 1.20991 1.00494 0.94617 1.02671 1.21104 0.92575 0.98049 0.97040 1.21599 1.00004 0.95870 0.98374 0.93514 0.86638 0.89409 0.92471 0.87291 0.89170 0.92835 0.86528 0.86689 0.87013 0.85434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.83 11.05 55.43 0.61 -22.22 16 2 C 0.09 2.31 5.24 -17.82 -0.09 2.22 16 3 Si 0.88 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.53 -13.78 7.28 -34.44 -0.25 -14.03 16 8 H 0.06 1.55 6.94 -52.49 -0.36 1.18 16 9 C 0.29 6.70 0.44 -133.84 -0.06 6.64 16 10 N -0.80 -18.02 7.98 -1.08 -0.01 -18.03 16 11 C -0.13 -3.04 4.77 -26.49 -0.13 -3.16 16 12 C 0.05 0.99 6.97 37.36 0.26 1.25 16 13 O -0.33 -6.74 10.27 -19.23 -0.20 -6.93 16 14 C 0.12 2.56 6.47 -39.19 -0.25 2.31 16 15 C -0.17 -2.99 9.94 -39.34 -0.39 -3.38 16 16 C -0.11 -1.74 10.04 -39.66 -0.40 -2.14 16 17 C -0.17 -2.92 10.04 -39.61 -0.40 -3.32 16 18 C -0.07 -1.39 8.70 -39.53 -0.34 -1.73 16 19 C -0.16 -3.37 4.96 -104.44 -0.52 -3.89 16 20 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 21 H 0.32 7.09 8.92 -39.29 -0.35 6.74 16 22 H 0.29 6.10 7.42 -39.29 -0.29 5.81 16 23 H 0.06 1.38 8.10 -51.93 -0.42 0.96 16 24 H 0.11 2.71 6.69 -51.92 -0.35 2.36 16 25 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 26 H 0.05 0.99 6.67 -51.93 -0.35 0.65 16 27 H 0.12 1.86 8.06 -52.48 -0.42 1.43 16 28 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.13 2.60 7.21 -52.48 -0.38 2.22 16 LS Contribution 247.58 15.07 3.73 3.73 Total: -1.00 -27.83 247.58 -6.78 -34.61 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -3.32 Total: 12.44 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -2.57 Total: -19.24 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.60 Total: -40.25 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.20 Total: -6.93 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -27.83 -6.78 -34.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084348298.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.827 kcal (2) G-P(sol) polarization free energy of solvation -27.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds