Wall clock time and date at job start Mon Mar 30 2020 02:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99966 * 2 1 4 4 H 1.48500 * 109.47074 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47406 * 299.99662 * 3 2 1 6 6 H 1.48500 * 109.47264 * 59.99843 * 3 2 1 7 7 C 1.37877 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00066 * 184.93316 * 7 2 1 9 9 C 1.50698 * 119.99935 * 4.94389 * 7 2 1 10 10 N 1.46897 * 109.43887 * 54.76440 * 9 7 2 11 11 C 1.53075 * 109.40053 * 294.87352 * 9 7 2 12 12 C 1.53401 * 108.30129 * 191.76621 * 11 9 7 13 13 O 1.42824 * 108.37835 * 64.71653 * 12 11 9 14 14 C 1.35839 * 117.85868 * 310.81942 * 13 12 11 15 15 C 1.39151 * 118.50187 * 197.06501 * 14 13 12 16 16 C 1.37964 * 120.21716 * 180.28163 * 15 14 13 17 17 C 1.38291 * 119.95889 * 359.73080 * 16 15 14 18 18 C 1.38104 * 119.97972 * 0.42018 * 17 16 15 19 19 C 1.38373 * 121.80792 * 17.20499 * 14 13 12 20 20 H 0.97001 * 119.99755 * 0.02562 * 1 2 3 21 21 H 1.00903 * 110.99879 * 59.92067 * 10 9 7 22 22 H 1.00902 * 110.99853 * 183.86805 * 10 9 7 23 23 H 1.09000 * 109.69551 * 311.47026 * 11 9 7 24 24 H 1.09008 * 109.69653 * 72.05985 * 11 9 7 25 25 H 1.09004 * 109.68295 * 184.43555 * 12 11 9 26 26 H 1.08998 * 109.68577 * 304.95808 * 12 11 9 27 27 H 1.08004 * 119.88720 * 0.31364 * 15 14 13 28 28 H 1.08000 * 120.02255 * 179.97438 * 16 15 14 29 29 H 1.08000 * 120.00865 * 180.16778 * 17 16 15 30 30 H 1.08008 * 119.83728 * 179.83360 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0815 -1.1958 0.0810 9 6 1.2552 -2.4967 -0.1114 10 7 0.4057 -2.4708 -1.3095 11 6 0.3796 -2.6879 1.1296 12 6 -0.1367 -4.1324 1.1370 13 8 0.9806 -5.0093 1.2867 14 6 2.0514 -4.8176 0.4732 15 6 2.9790 -5.8466 0.3429 16 6 4.0828 -5.6878 -0.4694 17 6 4.2664 -4.5046 -1.1614 18 6 3.3495 -3.4800 -1.0321 19 6 2.2393 -3.6339 -0.2185 20 1 -0.4850 0.8401 -0.0004 21 1 0.9598 -2.3421 -2.1429 22 1 -0.1548 -3.3073 -1.3736 23 1 0.9698 -2.5041 2.0274 24 1 -0.4626 -1.9967 1.0951 25 1 -0.8266 -4.2714 1.9694 26 1 -0.6473 -4.3446 0.1976 27 1 2.8341 -6.7729 0.8791 28 1 4.8009 -6.4884 -0.5679 29 1 5.1288 -4.3804 -1.7997 30 1 3.4966 -2.5560 -1.5715 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084348298.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:07 Heat of formation + Delta-G solvation = -27.948924 kcal Electronic energy + Delta-G solvation = -15120.925533 eV Core-core repulsion = 12687.390284 eV Total energy + Delta-G solvation = -2433.535249 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.53973 -38.23842 -37.06829 -33.67882 -31.47284 -31.14818 -30.22635 -27.81786 -24.91545 -24.00095 -22.92584 -20.19534 -18.58510 -18.35449 -17.33639 -16.85219 -16.50995 -15.88329 -15.62168 -15.05132 -14.72064 -14.59210 -14.25244 -13.58055 -13.41296 -12.85714 -12.80414 -12.53129 -12.33134 -12.24611 -11.87218 -11.58278 -11.44385 -10.88943 -10.33785 -9.67417 -9.13226 -8.73539 -7.93348 -6.12441 0.57204 0.62078 1.40412 1.44830 1.53048 2.46379 2.52847 2.98450 3.28400 4.08352 4.11646 4.18348 4.25903 4.35148 4.40036 4.53166 4.63900 4.69579 4.86774 5.12605 5.27167 5.29107 5.50680 5.65310 5.69147 5.79780 5.99530 6.07552 6.28906 6.61459 6.65125 7.07228 7.24317 7.57515 9.06522 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.032813 B = 0.011736 C = 0.009550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.110493 B = 2385.233711 C = 2931.175216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.047 3.953 3 Si 0.937 3.063 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.285 1.285 7 C -0.538 4.538 8 H 0.043 0.957 9 C 0.281 3.719 10 N -0.805 5.805 11 C -0.127 4.127 12 C 0.059 3.941 13 O -0.333 6.333 14 C 0.098 3.902 15 C -0.166 4.166 16 C -0.093 4.093 17 C -0.163 4.163 18 C -0.087 4.087 19 C -0.180 4.180 20 H 0.253 0.747 21 H 0.322 0.678 22 H 0.305 0.695 23 H 0.033 0.967 24 H 0.085 0.915 25 H 0.118 0.882 26 H 0.061 0.939 27 H 0.141 0.859 28 H 0.160 0.840 29 H 0.143 0.857 30 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.870 -9.153 -1.092 9.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.158 4.158 3 Si 0.764 3.236 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.211 1.211 7 C -0.576 4.576 8 H 0.062 0.938 9 C 0.190 3.810 10 N -0.332 5.332 11 C -0.166 4.166 12 C -0.015 4.015 13 O -0.248 6.248 14 C 0.053 3.947 15 C -0.184 4.184 16 C -0.111 4.111 17 C -0.181 4.181 18 C -0.106 4.106 19 C -0.184 4.184 20 H 0.063 0.937 21 H 0.133 0.867 22 H 0.117 0.883 23 H 0.052 0.948 24 H 0.104 0.896 25 H 0.136 0.864 26 H 0.079 0.921 27 H 0.158 0.842 28 H 0.177 0.823 29 H 0.161 0.839 30 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.298 -8.503 -0.616 9.141 hybrid contribution 0.713 0.691 -0.298 1.037 sum 4.012 -7.812 -0.915 8.829 Atomic orbital electron populations 1.70146 1.06431 1.25832 1.47503 1.25473 0.95376 1.00906 0.94029 0.85864 0.79156 0.81266 0.77306 1.19970 1.20821 1.21143 1.21098 0.92146 0.90905 1.53489 0.93849 1.17188 0.86659 0.89161 0.88037 1.59169 1.28133 1.41638 1.04214 1.22118 1.01367 0.95090 0.98041 1.23196 0.86101 0.89395 1.02824 1.85840 1.25181 1.56749 1.57041 1.19199 0.89200 0.93931 0.92394 1.20839 0.95871 0.98156 1.03552 1.21187 0.96642 0.98068 0.95218 1.21341 1.00359 0.93940 1.02439 1.21115 0.93328 0.98735 0.97446 1.21432 1.00611 0.95990 1.00325 0.93738 0.86661 0.88295 0.94825 0.89650 0.86369 0.92052 0.84165 0.82277 0.83907 0.86893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.77 11.05 21.45 0.24 -47.53 16 2 C 0.05 2.51 5.24 84.65 0.44 2.95 16 3 Si 0.94 43.18 29.54 68.60 2.03 45.20 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 7 C -0.54 -28.85 7.28 25.60 0.19 -28.66 16 8 H 0.04 2.39 6.94 -2.91 -0.02 2.37 16 9 C 0.28 13.42 0.44 2.08 0.00 13.42 16 10 N -0.81 -36.91 7.98 -157.33 -1.26 -38.16 16 11 C -0.13 -5.96 4.77 30.75 0.15 -5.82 16 12 C 0.06 2.25 6.97 72.12 0.50 2.76 16 13 O -0.33 -13.24 10.27 -91.74 -0.94 -14.18 16 14 C 0.10 3.94 6.47 22.52 0.15 4.08 16 15 C -0.17 -5.44 9.94 22.42 0.22 -5.22 16 16 C -0.09 -2.65 10.04 22.22 0.22 -2.43 16 17 C -0.16 -5.12 10.04 22.25 0.22 -4.90 16 18 C -0.09 -3.46 8.70 22.30 0.19 -3.27 16 19 C -0.18 -7.81 4.96 -19.75 -0.10 -7.91 16 20 H 0.25 13.52 8.31 -92.71 -0.77 12.75 16 21 H 0.32 14.47 8.92 -89.69 -0.80 13.67 16 22 H 0.31 12.71 7.42 -89.69 -0.67 12.04 16 23 H 0.03 1.67 8.10 -2.39 -0.02 1.65 16 24 H 0.09 4.37 6.69 -2.38 -0.02 4.35 16 25 H 0.12 3.76 8.14 -2.39 -0.02 3.74 16 26 H 0.06 2.22 6.67 -2.39 -0.02 2.21 16 27 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 28 H 0.16 3.16 8.06 -2.91 -0.02 3.13 16 29 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 30 H 0.11 4.68 7.21 -2.91 -0.02 4.66 16 Total: -1.00 -59.94 247.58 1.96 -57.98 By element: Atomic # 1 Polarization: 31.98 SS G_CDS: -0.30 Total: 31.68 kcal Atomic # 6 Polarization: -37.17 SS G_CDS: 2.19 Total: -34.98 kcal Atomic # 7 Polarization: -84.68 SS G_CDS: -1.02 Total: -85.70 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.94 Total: -14.18 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -59.94 1.96 -57.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084348298.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.028 kcal (2) G-P(sol) polarization free energy of solvation -59.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds