Wall clock time and date at job start Mon Mar 30 2020 02:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99938 * 2 1 4 4 H 1.48505 * 109.47064 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47520 * 300.00470 * 3 2 1 6 6 H 1.48500 * 109.47017 * 60.00559 * 3 2 1 7 7 C 1.37877 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99726 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00059 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.37023 * 299.84600 * 9 7 2 11 11 C 1.52966 * 109.42316 * 59.69733 * 9 7 2 12 12 O 1.43214 * 108.48193 * 169.24020 * 11 9 7 13 13 C 1.42728 * 113.11920 * 289.28905 * 12 11 9 14 14 C 1.50660 * 110.24538 * 51.80531 * 13 12 11 15 15 C 1.38646 * 118.70913 * 164.01906 * 14 13 12 16 16 C 1.38056 * 120.30226 * 179.79065 * 15 14 13 17 17 C 1.38266 * 119.89069 * 0.02562 * 16 15 14 18 18 C 1.38062 * 119.86635 * 0.25089 * 17 16 15 19 19 C 1.37905 * 121.51012 * 343.96915 * 14 13 12 20 20 H 0.97007 * 119.99800 * 359.97438 * 1 2 3 21 21 H 1.00903 * 110.99389 * 60.15581 * 10 9 7 22 22 H 1.00896 * 110.99696 * 184.10651 * 10 9 7 23 23 H 1.08998 * 109.64112 * 49.53863 * 11 9 7 24 24 H 1.09002 * 109.79686 * 289.02839 * 11 9 7 25 25 H 1.08996 * 109.34131 * 291.57352 * 13 12 11 26 26 H 1.08998 * 109.34756 * 172.04216 * 13 12 11 27 27 H 1.08001 * 119.84628 * 359.81319 * 15 14 13 28 28 H 1.07998 * 120.05444 * 180.02562 * 16 15 14 29 29 H 1.08001 * 120.06372 * 180.02562 * 17 16 15 30 30 H 1.08003 * 119.85743 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 0.4105 -2.5765 1.2018 11 6 0.3658 -2.5754 -1.2457 12 8 -0.1426 -3.9094 -1.3603 13 6 0.8569 -4.8606 -1.7256 14 6 2.0441 -4.7489 -0.8049 15 6 2.9632 -5.7866 -0.7743 16 6 4.0654 -5.7167 0.0540 17 6 4.2542 -4.6075 0.8575 18 6 3.3369 -3.5760 0.8323 19 6 2.2316 -3.6441 -0.0011 20 1 -0.4850 0.8401 0.0004 21 1 -0.2561 -1.8194 1.2263 22 1 -0.0546 -3.4699 1.2609 23 1 0.9549 -2.3308 -2.1296 24 1 -0.4635 -1.8742 -1.1526 25 1 1.1762 -4.6730 -2.7507 26 1 0.4407 -5.8657 -1.6577 27 1 2.8162 -6.6533 -1.4017 28 1 4.7790 -6.5271 0.0743 29 1 5.1158 -4.5497 1.5063 30 1 3.4847 -2.7094 1.4598 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084348304.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:33 Heat of formation + Delta-G solvation = -20.167605 kcal Electronic energy + Delta-G solvation = -15107.398649 eV Core-core repulsion = 12674.200823 eV Total energy + Delta-G solvation = -2433.197826 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.56139 -36.75535 -34.66592 -31.57099 -30.98243 -29.52644 -27.07981 -25.52650 -24.26581 -22.36701 -21.06511 -18.77519 -16.65632 -16.23252 -15.41577 -15.02850 -14.58816 -14.47872 -13.86631 -13.44849 -13.12380 -12.83890 -12.22710 -12.10827 -11.71790 -11.47132 -11.13333 -10.99448 -10.74154 -10.45260 -10.26842 -9.64440 -9.31232 -8.97784 -8.70476 -8.08052 -7.91931 -6.97576 -6.20802 -4.24118 1.98282 2.11229 3.22425 3.31297 3.35373 4.30288 4.43526 4.79128 5.15727 5.31747 5.47361 5.58057 5.74467 5.90519 5.91638 6.11420 6.33638 6.41029 6.57446 6.66253 6.80722 6.84792 7.02029 7.14440 7.35365 7.51709 7.67466 7.80917 7.89138 8.21273 8.62354 8.96011 9.18905 9.44529 10.87816 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.032281 B = 0.011771 C = 0.009607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.184733 B = 2378.245495 C = 2913.938224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.901 3.099 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.497 4.497 8 H 0.065 0.935 9 C 0.249 3.751 10 N -0.831 5.831 11 C 0.033 3.967 12 O -0.395 6.395 13 C 0.106 3.894 14 C -0.133 4.133 15 C -0.127 4.127 16 C -0.139 4.139 17 C -0.136 4.136 18 C -0.084 4.084 19 C -0.025 4.025 20 H 0.266 0.734 21 H 0.359 0.641 22 H 0.301 0.699 23 H 0.034 0.966 24 H 0.120 0.880 25 H 0.050 0.950 26 H 0.088 0.912 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.482 -7.208 -1.581 8.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.729 3.271 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.536 4.536 8 H 0.083 0.917 9 C 0.158 3.842 10 N -0.362 5.362 11 C -0.045 4.045 12 O -0.314 6.314 13 C 0.029 3.971 14 C -0.134 4.134 15 C -0.145 4.145 16 C -0.157 4.157 17 C -0.154 4.154 18 C -0.103 4.103 19 C -0.026 4.026 20 H 0.076 0.924 21 H 0.177 0.823 22 H 0.110 0.890 23 H 0.053 0.947 24 H 0.138 0.862 25 H 0.068 0.932 26 H 0.106 0.894 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.130 0.870 30 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.804 -6.990 -1.131 8.038 hybrid contribution 0.047 0.827 -0.768 1.129 sum 3.851 -6.163 -1.899 7.511 Atomic orbital electron populations 1.69616 1.05912 1.27129 1.51174 1.24986 0.95013 0.99379 0.93770 0.86377 0.80074 0.83011 0.77604 1.19710 1.21034 1.20809 1.21090 0.93042 0.88964 1.50504 0.91685 1.17825 0.88838 0.90696 0.86863 1.59279 1.29562 1.06324 1.41043 1.23948 1.00988 0.80578 0.98945 1.87972 1.33888 1.19108 1.90438 1.21199 0.87224 0.93541 0.95173 1.20416 0.97826 0.95215 0.99932 1.20789 0.95344 0.98171 1.00236 1.20847 0.98100 0.98330 0.98426 1.21108 0.99557 0.94749 1.00018 1.21249 0.93116 0.98013 0.97873 1.20024 0.95739 0.93898 0.92911 0.92434 0.82266 0.88954 0.94725 0.86185 0.93186 0.89442 0.87121 0.87163 0.87022 0.85300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.60 9.67 55.43 0.54 -23.06 16 2 C 0.07 1.83 5.20 -17.82 -0.09 1.73 16 3 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.50 -13.07 7.45 -34.44 -0.26 -13.32 16 8 H 0.06 1.72 6.80 -52.48 -0.36 1.37 16 9 C 0.25 6.08 0.58 -133.90 -0.08 6.00 16 10 N -0.83 -20.15 8.83 -1.13 -0.01 -20.16 16 11 C 0.03 0.79 5.29 37.14 0.20 0.99 16 12 O -0.39 -8.68 10.63 -35.23 -0.37 -9.06 16 13 C 0.11 1.97 6.66 35.99 0.24 2.21 16 14 C -0.13 -2.64 5.80 -104.61 -0.61 -3.25 16 15 C -0.13 -2.16 9.67 -39.50 -0.38 -2.54 16 16 C -0.14 -2.26 10.05 -39.64 -0.40 -2.66 16 17 C -0.14 -2.40 10.05 -39.64 -0.40 -2.80 16 18 C -0.08 -1.76 8.77 -39.51 -0.35 -2.11 16 19 C -0.03 -0.56 4.95 -104.59 -0.52 -1.08 16 20 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 21 H 0.36 9.16 6.93 -39.29 -0.27 8.88 16 22 H 0.30 6.94 8.81 -39.29 -0.35 6.60 16 23 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 24 H 0.12 3.10 6.44 -51.93 -0.33 2.77 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 27 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 28 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 29 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 30 H 0.13 2.82 7.18 -52.48 -0.38 2.44 16 LS Contribution 247.42 15.07 3.73 3.73 Total: -1.00 -27.01 247.42 -7.13 -34.14 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -3.35 Total: 15.68 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -2.64 Total: -16.82 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.53 Total: -43.22 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -0.37 Total: -9.06 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -27.01 -7.13 -34.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084348304.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.973 kcal (2) G-P(sol) polarization free energy of solvation -27.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds