Wall clock time and date at job start Mon Mar 30 2020 02:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99938 * 2 1 4 4 H 1.48505 * 109.47064 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47520 * 300.00470 * 3 2 1 6 6 H 1.48500 * 109.47017 * 60.00559 * 3 2 1 7 7 C 1.37877 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99726 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00059 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.37023 * 299.84600 * 9 7 2 11 11 C 1.52966 * 109.42316 * 59.69733 * 9 7 2 12 12 O 1.43214 * 108.48193 * 169.24020 * 11 9 7 13 13 C 1.42728 * 113.11920 * 289.28905 * 12 11 9 14 14 C 1.50660 * 110.24538 * 51.80531 * 13 12 11 15 15 C 1.38646 * 118.70913 * 164.01906 * 14 13 12 16 16 C 1.38056 * 120.30226 * 179.79065 * 15 14 13 17 17 C 1.38266 * 119.89069 * 0.02562 * 16 15 14 18 18 C 1.38062 * 119.86635 * 0.25089 * 17 16 15 19 19 C 1.37905 * 121.51012 * 343.96915 * 14 13 12 20 20 H 0.97007 * 119.99800 * 359.97438 * 1 2 3 21 21 H 1.00903 * 110.99389 * 60.15581 * 10 9 7 22 22 H 1.00896 * 110.99696 * 184.10651 * 10 9 7 23 23 H 1.08998 * 109.64112 * 49.53863 * 11 9 7 24 24 H 1.09002 * 109.79686 * 289.02839 * 11 9 7 25 25 H 1.08996 * 109.34131 * 291.57352 * 13 12 11 26 26 H 1.08998 * 109.34756 * 172.04216 * 13 12 11 27 27 H 1.08001 * 119.84628 * 359.81319 * 15 14 13 28 28 H 1.07998 * 120.05444 * 180.02562 * 16 15 14 29 29 H 1.08001 * 120.06372 * 180.02562 * 17 16 15 30 30 H 1.08003 * 119.85743 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 0.4105 -2.5765 1.2018 11 6 0.3658 -2.5754 -1.2457 12 8 -0.1426 -3.9094 -1.3603 13 6 0.8569 -4.8606 -1.7256 14 6 2.0441 -4.7489 -0.8049 15 6 2.9632 -5.7866 -0.7743 16 6 4.0654 -5.7167 0.0540 17 6 4.2542 -4.6075 0.8575 18 6 3.3369 -3.5760 0.8323 19 6 2.2316 -3.6441 -0.0011 20 1 -0.4850 0.8401 0.0004 21 1 -0.2561 -1.8194 1.2263 22 1 -0.0546 -3.4699 1.2609 23 1 0.9549 -2.3308 -2.1296 24 1 -0.4635 -1.8742 -1.1526 25 1 1.1762 -4.6730 -2.7507 26 1 0.4407 -5.8657 -1.6577 27 1 2.8162 -6.6533 -1.4017 28 1 4.7790 -6.5271 0.0743 29 1 5.1158 -4.5497 1.5063 30 1 3.4847 -2.7094 1.4598 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084348304.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:33 Heat of formation + Delta-G solvation = -38.230613 kcal Electronic energy + Delta-G solvation = -15108.181920 eV Core-core repulsion = 12674.200823 eV Total energy + Delta-G solvation = -2433.981096 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.13379 -38.32034 -36.47564 -33.46682 -32.44944 -31.10543 -28.88527 -27.35083 -25.91276 -23.95337 -22.61415 -20.40862 -18.45791 -17.96819 -17.07721 -16.62141 -16.31325 -16.01749 -15.66341 -15.00844 -14.77191 -14.51696 -13.89747 -13.76437 -13.40438 -13.03457 -12.85276 -12.61737 -12.48547 -12.22215 -11.96793 -11.38367 -11.11424 -10.75378 -10.64792 -9.51096 -9.39322 -8.87887 -8.18073 -6.27773 0.55452 0.68093 1.39093 1.42773 1.52739 2.39961 2.96881 3.01458 3.28460 3.93273 4.12949 4.21992 4.32598 4.42099 4.51883 4.56793 4.64673 4.85863 4.92145 4.94865 5.19133 5.33040 5.42869 5.65349 5.73366 5.75596 5.86927 6.14855 6.29166 6.39713 6.64003 7.01557 7.24927 7.42914 8.88641 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.032281 B = 0.011771 C = 0.009607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.184733 B = 2378.245495 C = 2913.938224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.030 3.970 3 Si 0.958 3.042 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.515 4.515 8 H 0.053 0.947 9 C 0.244 3.756 10 N -0.831 5.831 11 C 0.048 3.952 12 O -0.406 6.406 13 C 0.098 3.902 14 C -0.149 4.149 15 C -0.120 4.120 16 C -0.128 4.128 17 C -0.133 4.133 18 C -0.110 4.110 19 C -0.061 4.061 20 H 0.266 0.734 21 H 0.349 0.651 22 H 0.305 0.695 23 H 0.021 0.979 24 H 0.095 0.905 25 H 0.063 0.937 26 H 0.123 0.877 27 H 0.150 0.850 28 H 0.154 0.846 29 H 0.139 0.861 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.851 -9.181 -2.050 10.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.170 4.170 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.554 4.554 8 H 0.071 0.929 9 C 0.153 3.847 10 N -0.362 5.362 11 C -0.030 4.030 12 O -0.325 6.325 13 C 0.022 3.978 14 C -0.150 4.150 15 C -0.137 4.137 16 C -0.146 4.146 17 C -0.151 4.151 18 C -0.128 4.128 19 C -0.062 4.062 20 H 0.076 0.924 21 H 0.165 0.835 22 H 0.115 0.885 23 H 0.039 0.961 24 H 0.113 0.887 25 H 0.081 0.919 26 H 0.141 0.859 27 H 0.168 0.832 28 H 0.172 0.828 29 H 0.157 0.843 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.178 -8.981 -1.603 10.490 hybrid contribution -0.339 1.327 -0.624 1.505 sum 4.840 -7.654 -2.228 9.326 Atomic orbital electron populations 1.69716 1.06674 1.27641 1.51322 1.25629 0.95801 1.01956 0.93611 0.85508 0.78855 0.79684 0.77549 1.19765 1.20565 1.20649 1.21285 0.92710 0.90491 1.50869 0.92900 1.17796 0.89198 0.91223 0.86513 1.59268 1.29215 1.06109 1.41585 1.23542 0.99609 0.81495 0.98347 1.87922 1.35305 1.18580 1.90679 1.21548 0.86607 0.94081 0.95555 1.20620 0.99118 0.95409 0.99877 1.21219 0.94301 0.98143 1.00073 1.21351 0.98249 0.98489 0.96519 1.21417 0.99329 0.94059 1.00319 1.21167 0.94400 0.98797 0.98484 1.19965 0.96248 0.94573 0.95408 0.92394 0.83476 0.88475 0.96093 0.88679 0.91918 0.85945 0.83190 0.82840 0.84291 0.87811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.28 9.67 21.45 0.21 -49.07 16 2 C 0.03 1.59 5.20 84.65 0.44 2.03 16 3 Si 0.96 43.00 29.54 68.60 2.03 45.03 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 7 C -0.51 -27.94 7.45 25.60 0.19 -27.75 16 8 H 0.05 2.91 6.80 -2.91 -0.02 2.89 16 9 C 0.24 12.23 0.58 2.04 0.00 12.23 16 10 N -0.83 -41.61 8.83 -157.50 -1.39 -43.00 16 11 C 0.05 2.39 5.29 71.97 0.38 2.77 16 12 O -0.41 -17.76 10.63 -148.98 -1.58 -19.34 16 13 C 0.10 3.45 6.66 71.22 0.47 3.92 16 14 C -0.15 -5.64 5.80 -19.86 -0.12 -5.76 16 15 C -0.12 -3.54 9.67 22.32 0.22 -3.33 16 16 C -0.13 -3.58 10.05 22.23 0.22 -3.35 16 17 C -0.13 -4.36 10.05 22.23 0.22 -4.13 16 18 C -0.11 -4.61 8.77 22.31 0.20 -4.42 16 19 C -0.06 -2.74 4.95 -19.84 -0.10 -2.84 16 20 H 0.27 13.72 8.31 -92.70 -0.77 12.95 16 21 H 0.35 18.45 6.93 -89.69 -0.62 17.83 16 22 H 0.31 14.44 8.81 -89.70 -0.79 13.65 16 23 H 0.02 1.05 8.03 -2.39 -0.02 1.03 16 24 H 0.10 5.12 6.44 -2.39 -0.02 5.10 16 25 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.12 3.40 8.14 -2.39 -0.02 3.38 16 27 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 28 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 29 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 30 H 0.10 4.73 7.18 -2.91 -0.02 4.71 16 Total: -1.00 -59.49 247.42 1.15 -58.34 By element: Atomic # 1 Polarization: 38.91 SS G_CDS: -0.25 Total: 38.66 kcal Atomic # 6 Polarization: -32.75 SS G_CDS: 2.13 Total: -30.62 kcal Atomic # 7 Polarization: -90.89 SS G_CDS: -1.18 Total: -92.07 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -1.58 Total: -19.34 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -59.49 1.15 -58.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084348304.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.109 kcal (2) G-P(sol) polarization free energy of solvation -59.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds