Wall clock time and date at job start Mon Mar 30 2020 03:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99692 * 2 1 4 4 H 1.48497 * 109.47249 * 0.02562 * 3 2 1 5 5 H 1.48494 * 109.46852 * 120.00616 * 3 2 1 6 6 H 1.48503 * 109.46940 * 240.00270 * 3 2 1 7 7 C 1.37872 * 120.00388 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99897 * 190.82240 * 7 2 1 9 9 C 1.50702 * 119.99733 * 10.81735 * 7 2 1 10 10 C 1.52996 * 115.55029 * 35.51068 * 9 7 2 11 11 N 1.46497 * 109.47314 * 174.69081 * 10 9 7 12 12 C 1.34872 * 125.65078 * 267.82308 * 11 10 9 13 13 C 1.35643 * 109.06084 * 179.82789 * 12 11 10 14 14 C 1.39587 * 107.90468 * 0.42449 * 13 12 11 15 15 C 1.37873 * 125.64358 * 88.11695 * 11 10 9 16 16 C 1.41348 * 126.30461 * 0.03010 * 15 11 10 17 17 O 1.21442 * 120.00282 * 359.97438 * 16 15 11 18 18 C 1.53000 * 117.49945 * 249.84396 * 9 7 2 19 19 C 1.53001 * 117.49698 * 181.18368 * 9 7 2 20 20 H 0.96998 * 120.00164 * 354.97846 * 1 2 3 21 21 H 1.08991 * 109.47758 * 294.69555 * 10 9 7 22 22 H 1.09001 * 109.47107 * 54.69751 * 10 9 7 23 23 H 1.07998 * 125.47227 * 359.97438 * 12 11 10 24 24 H 1.08000 * 126.04581 * 180.16444 * 13 12 11 25 25 H 1.08001 * 126.53205 * 179.72558 * 14 13 12 26 26 H 1.08001 * 120.00090 * 179.97438 * 16 15 11 27 27 H 1.09008 * 117.49849 * 359.97438 * 18 9 7 28 28 H 1.08992 * 117.50255 * 145.01933 * 18 9 7 29 29 H 1.08998 * 117.49770 * 214.97624 * 19 9 7 30 30 H 1.08998 * 117.50193 * 359.97438 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1028 1.6966 -1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0702 -1.2023 0.1751 9 6 1.2712 -2.4874 -0.2461 10 6 0.1159 -2.4113 -1.2462 11 7 -0.4176 -3.7556 -1.4793 12 6 -0.0259 -4.5983 -2.4568 13 6 -0.7362 -5.7498 -2.3600 14 6 -1.6163 -5.6219 -1.2841 15 6 -1.4074 -4.3667 -0.7391 16 6 -2.0845 -3.8131 0.3713 17 8 -1.8084 -2.6945 0.7550 18 6 1.1217 -3.4498 0.9339 19 6 2.0875 -3.7808 -0.2066 20 1 -0.4850 0.8368 0.0735 21 1 -0.6709 -1.7727 -0.8448 22 1 0.4766 -1.9956 -2.1871 23 1 0.7333 -4.3906 -3.1963 24 1 -0.6409 -6.6113 -3.0043 25 1 -2.3254 -6.3614 -0.9422 26 1 -2.8475 -4.3850 0.8785 27 1 1.5542 -3.1475 1.8878 28 1 0.2006 -4.0289 0.9975 29 1 1.8013 -4.5777 -0.8929 30 1 3.1551 -3.6962 -0.0035 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085580566.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:47 Heat of formation + Delta-G solvation = 32.218227 kcal Electronic energy + Delta-G solvation = -15074.165148 eV Core-core repulsion = 12643.238943 eV Total energy + Delta-G solvation = -2430.926205 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.40888 -39.14582 -38.25664 -34.27820 -32.91441 -30.69493 -28.16336 -26.87296 -24.67169 -23.10963 -21.43994 -21.36979 -19.83109 -18.51427 -17.70924 -16.64753 -16.58154 -16.26315 -15.51460 -15.08411 -14.65957 -14.21831 -14.11484 -13.67187 -13.39439 -13.09165 -13.01199 -12.85307 -12.59753 -12.35078 -12.11526 -11.50067 -11.11899 -10.74928 -10.50508 -10.02940 -9.46414 -8.98854 -8.10847 -6.26126 0.41908 1.39513 1.41156 1.49706 1.94964 2.19857 2.38668 2.54236 2.93939 3.54939 3.77836 4.17771 4.25966 4.28088 4.51546 4.59742 4.63859 4.74296 4.84333 4.90883 5.08994 5.19576 5.31351 5.41971 5.45969 5.51171 5.82727 6.09801 6.22807 6.38899 6.52575 6.74558 6.95532 7.35847 8.86153 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.039576 B = 0.010234 C = 0.009465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.326183 B = 2735.338193 C = 2957.401153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.026 3.974 3 Si 0.960 3.040 4 H -0.282 1.282 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.027 3.973 10 C 0.137 3.863 11 N -0.401 5.401 12 C 0.005 3.995 13 C -0.221 4.221 14 C -0.115 4.115 15 C -0.141 4.141 16 C 0.372 3.628 17 O -0.489 6.489 18 C -0.195 4.195 19 C -0.194 4.194 20 H 0.263 0.737 21 H 0.129 0.871 22 H 0.056 0.944 23 H 0.171 0.829 24 H 0.167 0.833 25 H 0.178 0.822 26 H 0.149 0.851 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.318 -9.727 -4.147 11.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.176 4.176 3 Si 0.785 3.215 4 H -0.207 1.207 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.560 4.560 8 H 0.074 0.926 9 C 0.026 3.974 10 C 0.016 3.984 11 N -0.072 5.072 12 C -0.134 4.134 13 C -0.245 4.245 14 C -0.142 4.142 15 C -0.251 4.251 16 C 0.235 3.765 17 O -0.365 6.365 18 C -0.233 4.233 19 C -0.231 4.231 20 H 0.073 0.927 21 H 0.146 0.854 22 H 0.075 0.925 23 H 0.189 0.811 24 H 0.184 0.816 25 H 0.196 0.804 26 H 0.165 0.835 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.234 -8.603 -3.901 9.984 hybrid contribution 0.638 0.935 0.173 1.145 sum -2.596 -7.668 -3.728 8.912 Atomic orbital electron populations 1.69971 1.06809 1.27471 1.48075 1.25780 0.95710 1.02302 0.93831 0.85588 0.78377 0.78663 0.78870 1.20737 1.20081 1.19162 1.20687 0.93993 0.90385 1.50963 0.92589 1.19218 0.94231 0.89319 0.94641 1.21819 0.99386 0.79291 0.97859 1.44724 1.26521 1.13840 1.22096 1.22502 1.03234 0.91990 0.95703 1.21125 1.01472 0.98872 1.03005 1.21872 1.01261 0.94281 0.96744 1.20939 1.01972 0.98032 1.04137 1.22700 0.84069 0.87571 0.82152 1.90827 1.61435 1.21639 1.62625 1.22848 0.99745 1.07049 0.93630 1.23014 0.96299 1.01146 1.02625 0.92710 0.85379 0.92544 0.81136 0.81578 0.80450 0.83511 0.92638 0.90704 0.89215 0.90633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.92 10.77 21.45 0.23 -50.69 16 2 C 0.03 1.43 5.25 84.65 0.44 1.87 16 3 Si 0.96 43.41 29.56 68.60 2.03 45.43 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.52 -29.28 9.04 25.60 0.23 -29.05 16 8 H 0.06 3.11 7.84 -2.91 -0.02 3.09 16 9 C 0.03 1.38 2.36 -52.93 -0.13 1.25 16 10 C 0.14 6.68 4.77 86.38 0.41 7.09 16 11 N -0.40 -16.03 1.91 -516.30 -0.99 -17.02 16 12 C 0.00 0.16 9.55 83.62 0.80 0.96 16 13 C -0.22 -5.98 10.81 21.99 0.24 -5.75 16 14 C -0.12 -3.16 10.87 22.64 0.25 -2.91 16 15 C -0.14 -5.05 5.39 39.00 0.21 -4.84 16 16 C 0.37 13.45 10.18 68.59 0.70 14.15 16 17 O -0.49 -23.51 14.39 -3.53 -0.05 -23.56 16 18 C -0.19 -9.58 9.05 30.62 0.28 -9.31 16 19 C -0.19 -8.70 9.59 30.62 0.29 -8.41 16 20 H 0.26 14.54 8.32 -92.71 -0.77 13.77 16 21 H 0.13 7.08 4.21 -2.39 -0.01 7.07 16 22 H 0.06 2.76 8.13 -2.39 -0.02 2.74 16 23 H 0.17 4.89 8.06 -2.91 -0.02 4.87 16 24 H 0.17 3.32 8.06 -2.91 -0.02 3.30 16 25 H 0.18 3.33 8.06 -2.91 -0.02 3.30 16 26 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 27 H 0.05 2.85 8.14 -2.38 -0.02 2.83 16 28 H 0.07 3.54 4.67 -2.39 -0.01 3.52 16 29 H 0.09 3.68 5.99 -2.39 -0.01 3.66 16 30 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -66.14 252.46 6.08 -60.06 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 1.14 Total: 20.72 kcal Atomic # 6 Polarization: -38.66 SS G_CDS: 3.72 Total: -34.93 kcal Atomic # 7 Polarization: -66.96 SS G_CDS: -0.75 Total: -67.71 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.05 Total: -23.56 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -66.14 6.08 -60.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085580566.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.274 kcal (2) G-P(sol) polarization free energy of solvation -66.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds