Wall clock time and date at job start Mon Mar 30 2020 03:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38629 * 120.30563 * 2 1 4 4 C 1.38568 * 118.50231 * 179.70633 * 3 2 1 5 5 C 1.39554 * 119.04119 * 0.27905 * 4 3 2 6 6 C 1.47547 * 119.74281 * 179.97438 * 5 4 3 7 7 O 1.21207 * 120.00059 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99894 * 180.02562 * 6 5 4 9 9 H 1.09000 * 109.47193 * 35.00142 * 8 6 5 10 10 C 1.53001 * 109.47205 * 274.99939 * 8 6 5 11 11 C 1.50705 * 109.47288 * 154.99947 * 8 6 5 12 12 H 1.08002 * 119.99793 * 359.97438 * 11 8 6 13 13 C 1.37873 * 119.99855 * 179.97438 * 11 8 6 14 14 N 1.31515 * 120.00473 * 0.02562 * 13 11 8 15 15 Si 1.86807 * 119.99888 * 179.97438 * 13 11 8 16 16 H 1.48505 * 109.46728 * 89.99894 * 15 13 11 17 17 H 1.48495 * 109.47108 * 210.00314 * 15 13 11 18 18 H 1.48494 * 109.46858 * 330.00422 * 15 13 11 19 19 N 1.32887 * 120.50940 * 0.02562 * 5 4 3 20 20 C 1.31443 * 121.63065 * 359.97438 * 19 5 4 21 21 H 1.08997 * 109.47029 * 89.99848 * 1 2 3 22 22 H 1.09002 * 109.47005 * 209.99482 * 1 2 3 23 23 H 1.08997 * 109.47100 * 329.99217 * 1 2 3 24 24 H 1.08002 * 120.75101 * 359.97438 * 3 2 1 25 25 H 1.08001 * 120.47891 * 180.25660 * 4 3 2 26 26 H 1.09000 * 109.47211 * 300.00192 * 10 8 6 27 27 H 1.09006 * 109.47087 * 59.99920 * 10 8 6 28 28 H 1.09004 * 109.47175 * 179.97438 * 10 8 6 29 29 H 0.97001 * 120.00431 * 179.97438 * 14 13 11 30 30 H 1.08006 * 119.53714 * 180.02562 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2065 1.1968 0.0000 4 6 3.5915 1.1533 0.0062 5 6 4.2302 -0.0875 0.0063 6 6 5.7043 -0.1520 0.0124 7 8 6.3556 0.8702 0.0167 8 6 6.4000 -1.4888 0.0119 9 1 5.8235 -2.1982 -0.5818 10 6 6.5179 -2.0028 1.4481 11 6 7.7767 -1.3384 -0.5824 12 1 8.1140 -0.3716 -0.9259 13 6 8.6057 -2.4351 -0.6877 14 7 8.1948 -3.6125 -0.2699 15 14 10.3119 -2.2489 -1.4250 16 1 11.2839 -1.9286 -0.3489 17 1 10.7064 -3.5183 -2.0867 18 1 10.3017 -1.1515 -2.4254 19 7 3.5211 -1.2114 0.0000 20 6 2.2068 -1.1971 -0.0060 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5139 24 1 1.6839 2.1420 -0.0004 25 1 4.1683 2.0663 0.0106 26 1 7.0944 -1.2934 2.0418 27 1 5.5221 -2.1116 1.8780 28 1 7.0207 -2.9700 1.4478 29 1 8.7779 -4.3842 -0.3443 30 1 1.6642 -2.1310 -0.0106 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088135072.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:52 Heat of formation + Delta-G solvation = -12.093752 kcal Electronic energy + Delta-G solvation = -14177.297283 eV Core-core repulsion = 11744.449566 eV Total energy + Delta-G solvation = -2432.847717 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.16955 -38.05520 -33.82587 -33.41900 -31.71019 -30.42669 -27.65330 -25.08110 -23.74454 -23.35489 -21.53368 -19.13459 -16.72271 -16.19951 -15.87773 -14.99921 -14.65468 -14.45291 -13.95746 -13.56341 -13.33948 -13.03881 -12.57647 -12.44980 -12.29989 -11.67295 -11.43052 -11.00185 -10.64355 -10.60132 -10.15065 -10.00548 -9.68479 -9.45161 -8.85496 -8.73533 -8.48016 -8.22246 -5.95053 -4.00479 0.85991 1.43086 3.03098 3.36946 3.42340 3.48042 4.20113 4.38395 4.52639 4.74591 4.82816 4.95932 4.99120 5.36843 5.41834 5.46391 5.56626 5.81324 5.91302 6.01952 6.25012 6.59397 6.80587 6.87869 7.06937 7.16265 7.65459 7.85091 8.05493 8.14441 8.32983 8.64922 9.04083 9.63422 11.11528 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.053724 B = 0.006878 C = 0.006458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.054442 B = 4070.226940 C = 4334.484425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.130 4.130 3 C -0.092 4.092 4 C -0.125 4.125 5 C 0.056 3.944 6 C 0.412 3.588 7 O -0.457 6.457 8 C 0.016 3.984 9 H 0.064 0.936 10 C -0.122 4.122 11 C -0.510 4.510 12 H 0.065 0.935 13 C 0.061 3.939 14 N -0.891 5.891 15 Si 0.897 3.103 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.274 1.274 19 N -0.426 5.426 20 C 0.091 3.909 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.134 0.866 25 H 0.142 0.858 26 H 0.026 0.974 27 H 0.016 0.984 28 H 0.093 0.907 29 H 0.260 0.740 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.418 5.452 1.105 15.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.132 4.132 3 C -0.118 4.118 4 C -0.145 4.145 5 C -0.080 4.080 6 C 0.288 3.712 7 O -0.329 6.329 8 C -0.003 4.003 9 H 0.082 0.918 10 C -0.180 4.180 11 C -0.548 4.548 12 H 0.084 0.916 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.725 3.275 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 N -0.136 5.136 20 C -0.070 4.070 21 H 0.091 0.909 22 H 0.089 0.911 23 H 0.086 0.914 24 H 0.152 0.848 25 H 0.160 0.840 26 H 0.045 0.955 27 H 0.035 0.965 28 H 0.112 0.888 29 H 0.070 0.930 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.500 5.033 1.117 14.451 hybrid contribution 0.308 0.826 -0.381 0.961 sum -13.192 5.859 0.736 14.454 Atomic orbital electron populations 1.20729 0.90291 1.03046 1.02550 1.21161 0.97481 0.94476 1.00083 1.21422 0.93801 0.98126 0.98455 1.22372 0.94916 0.99641 0.97532 1.22536 0.98074 0.88725 0.98659 1.23496 0.84830 0.93726 0.69098 1.90358 1.67343 1.38864 1.36315 1.19044 0.95981 0.89050 0.96256 0.91790 1.21585 0.97837 1.03589 0.94970 1.21141 0.98291 0.95442 1.39927 0.91636 1.24925 0.98456 0.95119 0.95465 1.69890 1.36571 0.99347 1.47174 0.86509 0.84291 0.77359 0.79366 1.20636 1.21244 1.19871 1.67800 1.07603 1.30478 1.07769 1.22826 0.89946 0.97373 0.96832 0.90853 0.91052 0.91443 0.84824 0.84030 0.95489 0.96511 0.88809 0.92968 0.82526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.03 36.00 0.36 -0.50 16 2 C -0.13 -1.57 5.91 -104.32 -0.62 -2.19 16 3 C -0.09 -1.18 9.84 -39.32 -0.39 -1.56 16 4 C -0.12 -2.04 9.64 -38.97 -0.38 -2.41 16 5 C 0.06 1.13 6.73 -83.12 -0.56 0.57 16 6 C 0.41 9.89 6.23 -30.52 -0.19 9.70 16 7 O -0.46 -11.60 15.78 5.62 0.09 -11.51 16 8 C 0.02 0.41 2.27 -92.92 -0.21 0.20 16 9 H 0.06 1.79 7.76 -51.93 -0.40 1.38 16 10 C -0.12 -3.08 8.95 37.16 0.33 -2.75 16 11 C -0.51 -14.85 8.33 -34.44 -0.29 -15.13 16 12 H 0.07 1.96 7.03 -52.49 -0.37 1.59 16 13 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 14 N -0.89 -25.85 11.32 55.43 0.63 -25.22 16 15 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 19 N -0.43 -8.11 9.54 -9.88 -0.09 -8.21 16 20 C 0.09 1.32 10.86 -17.56 -0.19 1.12 16 21 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 22 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 23 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 24 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 25 H 0.14 2.20 7.64 -52.49 -0.40 1.80 16 26 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 2.55 6.07 -51.93 -0.32 2.23 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.16 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 265.14 15.07 4.00 4.00 Total: -1.00 -31.84 265.14 -6.20 -38.04 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: -3.58 Total: -2.86 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -2.22 Total: -11.30 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: 0.53 Total: -33.43 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.09 Total: -11.51 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.84 -6.20 -38.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088135072.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.947 kcal (2) G-P(sol) polarization free energy of solvation -31.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds