Wall clock time and date at job start Mon Mar 30 2020 02:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00160 * 2 1 4 4 H 1.48499 * 109.47173 * 240.00066 * 3 2 1 5 5 H 1.48505 * 109.47144 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47145 * 120.00302 * 3 2 1 7 7 C 1.37881 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00139 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99676 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.46890 * 60.00577 * 9 7 2 11 11 N 1.46889 * 109.47089 * 299.99881 * 9 7 2 12 12 C 1.50701 * 109.46924 * 179.97438 * 9 7 2 13 13 C 1.38293 * 120.11105 * 79.97764 * 12 9 7 14 14 C 1.37938 * 120.34482 * 179.83132 * 13 12 9 15 15 C 1.39277 * 120.24365 * 0.04265 * 14 13 12 16 16 C 1.38884 * 118.87920 * 0.29091 * 15 14 13 17 17 C 1.37741 * 120.78134 * 359.52138 * 16 15 14 18 18 C 1.51638 * 107.04617 * 179.48750 * 16 15 14 19 19 C 1.54706 * 101.95770 * 344.59228 * 18 16 15 20 20 O 1.36143 * 129.88799 * 180.96592 * 15 14 13 21 21 H 0.96994 * 120.00099 * 359.97438 * 1 2 3 22 22 H 1.00900 * 111.00197 * 300.00284 * 11 9 7 23 23 H 1.00896 * 111.00407 * 63.95693 * 11 9 7 24 24 H 1.07991 * 119.82735 * 359.85789 * 13 12 9 25 25 H 1.08001 * 119.87563 * 180.02562 * 14 13 12 26 26 H 1.08000 * 120.01235 * 180.36358 * 17 16 15 27 27 H 1.09002 * 110.93994 * 102.77103 * 18 16 15 28 28 H 1.08997 * 110.93769 * 226.42283 * 18 16 15 29 29 H 1.09003 * 110.74785 * 143.62371 * 19 18 16 30 30 H 1.08994 * 110.75591 * 266.97977 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 7 0.4070 -2.5773 1.1991 12 6 2.2303 -3.6447 -0.0018 13 6 2.8403 -4.0372 1.1756 14 6 3.7348 -5.0873 1.1806 15 6 4.0321 -5.7611 -0.0015 16 6 3.4185 -5.3531 -1.1787 17 6 2.5227 -4.3068 -1.1808 18 6 3.9386 -6.2502 -2.2851 19 6 5.1773 -6.8950 -1.6194 20 8 4.8593 -6.8205 -0.2182 21 1 -0.4850 0.8400 0.0004 22 1 0.9653 -2.5260 2.0380 23 1 -0.3003 -1.8578 1.1911 24 1 2.6149 -3.5193 2.0960 25 1 4.2065 -5.3878 2.1045 26 1 2.0483 -4.0037 -2.1025 27 1 3.2012 -7.0074 -2.5517 28 1 4.2262 -5.6648 -3.1584 29 1 5.2899 -7.9320 -1.9357 30 1 6.0776 -6.3223 -1.8422 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095674111.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:45 Heat of formation + Delta-G solvation = -32.592986 kcal Electronic energy + Delta-G solvation = -14348.131793 eV Core-core repulsion = 11914.395163 eV Total energy + Delta-G solvation = -2433.736631 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.88410 -38.91369 -36.10260 -33.59789 -33.22736 -30.67502 -29.77379 -27.86076 -24.67951 -24.09199 -22.77384 -21.23142 -18.59743 -18.24079 -17.38129 -17.19273 -16.91463 -16.25367 -15.03614 -14.86767 -14.63927 -14.53381 -14.02238 -13.77052 -13.54484 -13.23979 -13.03032 -12.79103 -12.58712 -12.53897 -12.05334 -11.70959 -11.49675 -11.39760 -10.70481 -9.72982 -9.24820 -8.83048 -8.10503 -6.38587 0.47107 0.56121 1.38304 1.38887 1.47343 2.34995 2.43383 2.90523 3.05129 3.58059 3.77762 4.04101 4.21509 4.26801 4.45145 4.59210 4.63305 4.68436 4.78203 4.91938 4.97472 5.09912 5.36929 5.48168 5.53330 5.64630 5.72748 5.95660 6.12530 6.36659 6.63499 6.92265 7.11717 7.38124 8.81881 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.043689 B = 0.007296 C = 0.007039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.735622 B = 3836.943010 C = 3976.903586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.023 3.977 3 Si 0.958 3.042 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.272 1.272 7 C -0.560 4.560 8 H 0.046 0.954 9 C 0.248 3.752 10 H 0.011 0.989 11 N -0.842 5.842 12 C -0.075 4.075 13 C -0.086 4.086 14 C -0.141 4.141 15 C 0.067 3.933 16 C -0.181 4.181 17 C -0.092 4.092 18 C -0.105 4.105 19 C 0.049 3.951 20 O -0.324 6.324 21 H 0.268 0.732 22 H 0.319 0.681 23 H 0.345 0.655 24 H 0.128 0.872 25 H 0.141 0.859 26 H 0.117 0.883 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.136 0.864 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.364 -10.078 -2.554 13.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.177 4.177 3 Si 0.784 3.216 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.197 1.197 7 C -0.600 4.600 8 H 0.065 0.935 9 C 0.138 3.862 10 H 0.029 0.971 11 N -0.371 5.371 12 C -0.076 4.076 13 C -0.105 4.105 14 C -0.159 4.159 15 C 0.023 3.977 16 C -0.181 4.181 17 C -0.110 4.110 18 C -0.142 4.142 19 C -0.025 4.025 20 O -0.239 6.239 21 H 0.078 0.922 22 H 0.129 0.871 23 H 0.160 0.840 24 H 0.146 0.854 25 H 0.159 0.841 26 H 0.135 0.865 27 H 0.119 0.881 28 H 0.122 0.878 29 H 0.154 0.846 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.079 -10.858 -2.692 13.799 hybrid contribution 0.398 2.221 0.012 2.256 sum 8.477 -8.637 -2.679 12.395 Atomic orbital electron populations 1.69832 1.06928 1.28116 1.50646 1.25736 0.95736 1.02280 0.93948 0.85613 0.78411 0.78895 0.78721 1.20055 1.20534 1.19706 1.22025 0.93316 0.92387 1.52249 0.93538 1.17722 0.88866 0.88987 0.90616 0.97055 1.59486 1.18205 1.55347 1.04099 1.20207 0.97772 0.96300 0.93312 1.20700 0.95535 0.96002 0.98233 1.20378 1.01848 0.96841 0.96844 1.19588 0.93384 0.89508 0.95233 1.21017 1.00854 0.99549 0.96720 1.20246 0.97903 0.94887 0.97987 1.21869 0.97710 0.97709 0.96918 1.24117 0.97258 1.04357 0.76734 1.86760 1.63797 1.43852 1.29472 0.92234 0.87083 0.84004 0.85391 0.84111 0.86485 0.88123 0.87768 0.84634 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.85 11.54 21.45 0.25 -50.60 16 2 C 0.02 1.26 5.38 84.66 0.46 1.71 16 3 Si 0.96 42.86 29.54 68.60 2.03 44.89 16 4 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.56 -30.60 8.70 25.60 0.22 -30.38 16 8 H 0.05 2.57 7.74 -2.91 -0.02 2.55 16 9 C 0.25 12.76 2.95 43.43 0.13 12.89 16 10 H 0.01 0.65 8.01 -2.39 -0.02 0.64 16 11 N -0.84 -41.14 9.02 -174.96 -1.58 -42.72 16 12 C -0.08 -3.37 4.90 -19.82 -0.10 -3.46 16 13 C -0.09 -3.47 9.27 22.21 0.21 -3.26 16 14 C -0.14 -4.99 10.06 22.45 0.23 -4.77 16 15 C 0.07 2.34 7.04 22.67 0.16 2.50 16 16 C -0.18 -6.19 6.27 -19.53 -0.12 -6.31 16 17 C -0.09 -3.70 9.66 22.18 0.21 -3.49 16 18 C -0.11 -2.46 7.11 30.73 0.22 -2.24 16 19 C 0.05 1.01 8.01 72.56 0.58 1.60 16 20 O -0.32 -9.71 11.11 -95.18 -1.06 -10.77 16 21 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 22 H 0.32 14.58 7.35 -89.69 -0.66 13.92 16 23 H 0.35 18.02 7.08 -89.70 -0.63 17.38 16 24 H 0.13 4.95 6.67 -2.92 -0.02 4.93 16 25 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 26 H 0.12 4.59 8.04 -2.91 -0.02 4.56 16 27 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -61.33 255.72 1.70 -59.63 By element: Atomic # 1 Polarization: 34.92 SS G_CDS: -0.13 Total: 34.79 kcal Atomic # 6 Polarization: -37.41 SS G_CDS: 2.19 Total: -35.22 kcal Atomic # 7 Polarization: -91.99 SS G_CDS: -1.33 Total: -93.32 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -1.06 Total: -10.77 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -61.33 1.70 -59.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095674111.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.034 kcal (2) G-P(sol) polarization free energy of solvation -61.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds