Wall clock time and date at job start Mon Mar 30 2020 02:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30887 * 1 3 3 Si 1.86797 * 119.99961 * 2 1 4 4 H 1.48501 * 109.47039 * 239.99663 * 3 2 1 5 5 H 1.48499 * 109.47462 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47070 * 119.99746 * 3 2 1 7 7 C 1.39886 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00097 * 197.79935 * 7 2 1 9 9 C 1.41223 * 119.99936 * 17.80499 * 7 2 1 10 10 C 1.40851 * 120.17597 * 204.45640 * 9 7 2 11 11 C 1.36422 * 119.80798 * 180.02562 * 10 9 7 12 12 C 1.39331 * 120.18686 * 0.02562 * 11 10 9 13 13 O 1.35675 * 119.81594 * 179.97438 * 12 11 10 14 14 C 1.39288 * 120.36280 * 359.95525 * 12 11 10 15 15 C 1.50699 * 119.90807 * 179.97438 * 14 12 11 16 16 H 1.09007 * 112.78522 * 316.30371 * 15 14 12 17 17 C 1.53632 * 113.51654 * 87.06631 * 15 14 12 18 18 C 1.53517 * 83.53398 * 140.76267 * 17 15 14 19 19 N 1.47475 * 87.99704 * 334.02568 * 18 17 15 20 20 C 1.36454 * 120.18822 * 0.27872 * 14 12 11 21 21 H 0.96999 * 119.99862 * 0.02562 * 1 2 3 22 22 H 1.07997 * 120.09696 * 0.03921 * 10 9 7 23 23 H 1.08002 * 119.90222 * 180.02562 * 11 10 9 24 24 H 0.96704 * 113.99700 * 269.97711 * 13 12 11 25 25 H 1.09003 * 114.16672 * 27.13689 * 17 15 14 26 26 H 1.08992 * 114.20882 * 254.39326 * 17 15 14 27 27 H 1.08999 * 113.47265 * 219.23198 * 18 17 15 28 28 H 1.08998 * 113.47547 * 88.82863 * 18 17 15 29 29 H 1.00903 * 111.00012 * 138.67212 * 19 18 17 30 30 H 1.08002 * 120.09635 * 179.74847 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0967 1.6963 -1.2125 5 1 1.2779 2.7465 -0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0083 -1.2115 0.0005 8 1 3.0494 -1.2338 0.2864 9 6 1.3528 -2.4053 -0.3729 10 6 1.8276 -3.6482 0.0896 11 6 1.1890 -4.7968 -0.2763 12 6 0.0705 -4.7430 -1.1053 13 8 -0.5585 -5.8901 -1.4649 14 6 -0.4056 -3.5180 -1.5667 15 6 -1.6159 -3.4717 -2.4634 16 1 -1.5930 -4.2333 -3.2430 17 6 -2.9459 -3.4232 -1.6961 18 6 -3.3500 -2.4412 -2.8047 19 7 -1.9201 -2.1208 -2.9707 20 6 0.2244 -2.3601 -1.2140 21 1 -0.4850 0.8400 -0.0004 22 1 2.6946 -3.6916 0.7321 23 1 1.5515 -5.7506 0.0778 24 1 -0.2184 -6.2867 -2.2787 25 1 -2.8736 -2.9733 -0.7059 26 1 -3.5020 -4.3606 -1.7058 27 1 -3.9443 -1.6011 -2.4451 28 1 -3.7903 -2.9267 -3.6756 29 1 -1.6790 -2.0383 -3.9470 30 1 -0.1436 -1.4114 -1.5759 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104456287.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:01 Heat of formation + Delta-G solvation = 7.413258 kcal Electronic energy + Delta-G solvation = -14640.314512 eV Core-core repulsion = 12208.312683 eV Total energy + Delta-G solvation = -2432.001830 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.43580 -37.54914 -35.61793 -33.18158 -30.11559 -28.90990 -27.14043 -25.00975 -24.43327 -21.09307 -20.47784 -18.75960 -17.20177 -17.10551 -16.41669 -15.26615 -14.56878 -14.14916 -14.11107 -13.25943 -12.79483 -12.48998 -12.14067 -11.66837 -11.47489 -11.23316 -11.15421 -10.85824 -10.75233 -10.61658 -10.41095 -9.96632 -9.72310 -9.15215 -8.80459 -8.40004 -7.37781 -7.17950 -6.70723 -4.27247 2.70714 3.05747 3.09674 3.11425 3.19156 3.96060 4.54708 4.70532 5.09610 5.34651 5.47712 5.63608 5.79850 5.92346 6.06613 6.16918 6.24403 6.33920 6.51686 6.68900 6.94102 7.11055 7.26295 7.40300 7.61942 7.67261 7.75963 8.04308 8.14362 8.36647 8.60421 8.77284 8.92266 9.10888 10.22142 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.027208 B = 0.011089 C = 0.008261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.859082 B = 2524.395411 C = 3388.710890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.460 4.460 8 H 0.077 0.923 9 C 0.102 3.898 10 C -0.223 4.223 11 C -0.108 4.108 12 C -0.045 4.045 13 O -0.501 6.501 14 C -0.080 4.080 15 C 0.089 3.911 16 H 0.064 0.936 17 C -0.127 4.127 18 C -0.003 4.003 19 N -0.608 5.608 20 C -0.130 4.130 21 H 0.282 0.718 22 H 0.093 0.907 23 H 0.091 0.909 24 H 0.348 0.652 25 H 0.094 0.906 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.309 0.691 30 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.147 -2.342 -5.160 6.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.144 4.144 3 Si 0.731 3.269 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.489 4.489 8 H 0.095 0.905 9 C 0.100 3.900 10 C -0.243 4.243 11 C -0.127 4.127 12 C -0.090 4.090 13 O -0.307 6.307 14 C -0.081 4.081 15 C -0.021 4.021 16 H 0.082 0.918 17 C -0.165 4.165 18 C -0.134 4.134 19 N -0.231 5.231 20 C -0.150 4.150 21 H 0.093 0.907 22 H 0.111 0.889 23 H 0.109 0.891 24 H 0.198 0.802 25 H 0.112 0.888 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.120 0.880 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.475 -1.454 -4.009 5.501 hybrid contribution 0.431 -0.064 -1.110 1.193 sum -3.044 -1.518 -5.119 6.146 Atomic orbital electron populations 1.69848 1.07364 1.29408 1.33472 1.25916 0.94752 1.01199 0.92509 0.86398 0.80169 0.80446 0.79883 1.18870 1.20323 1.19107 1.19502 0.98083 0.91325 1.40001 0.90520 1.17734 0.91496 0.92009 0.88809 1.20612 1.03759 0.92804 1.07138 1.20485 0.95254 0.97231 0.99703 1.17808 0.98788 0.83828 1.08551 1.84852 1.61535 1.39234 1.45110 1.19207 0.96023 0.93467 0.99410 1.21725 0.94506 0.89990 0.95928 0.91847 1.23121 0.95739 0.98489 0.99137 1.23471 0.92755 0.99037 0.98102 1.67400 1.06463 1.27619 1.21629 1.21090 0.97382 0.97487 0.99006 0.90699 0.88860 0.89080 0.80167 0.88774 0.91507 0.90282 0.92779 0.87967 0.84020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.32 10.96 55.54 0.61 -19.71 16 2 C 0.08 1.91 5.13 -17.34 -0.09 1.83 16 3 Si 0.91 18.83 29.60 -169.99 -5.03 13.80 16 4 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.46 -12.32 9.04 -37.83 -0.34 -12.66 16 8 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 9 C 0.10 2.77 5.57 -106.80 -0.60 2.17 16 10 C -0.22 -5.64 9.74 -39.25 -0.38 -6.02 16 11 C -0.11 -2.55 9.92 -39.83 -0.40 -2.95 16 12 C -0.04 -1.04 6.70 -38.78 -0.26 -1.30 16 13 O -0.50 -10.17 12.85 -18.73 -0.24 -10.41 16 14 C -0.08 -1.89 5.34 -104.88 -0.56 -2.45 16 15 C 0.09 1.74 3.79 -72.53 -0.28 1.46 16 16 H 0.06 1.12 8.08 -51.92 -0.42 0.70 16 17 C -0.13 -2.30 8.01 -26.14 -0.21 -2.51 16 18 C 0.00 -0.05 8.61 -7.55 -0.06 -0.11 16 19 N -0.61 -11.31 7.16 -116.53 -0.83 -12.15 16 20 C -0.13 -3.42 8.04 -39.25 -0.32 -3.74 16 21 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 22 H 0.09 2.21 8.06 -52.49 -0.42 1.78 16 23 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 24 H 0.35 5.44 9.06 45.56 0.41 5.85 16 25 H 0.09 1.94 8.11 -51.93 -0.42 1.52 16 26 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.31 5.02 8.91 -39.29 -0.35 4.67 16 30 H 0.14 3.85 5.21 -52.49 -0.27 3.57 16 LS Contribution 257.92 15.07 3.89 3.89 Total: -1.00 -29.06 257.92 -7.81 -36.87 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -2.71 Total: 13.99 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: -3.49 Total: -26.28 kcal Atomic # 7 Polarization: -31.63 SS G_CDS: -0.23 Total: -31.86 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -0.24 Total: -10.41 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.06 -7.81 -36.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104456287.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.285 kcal (2) G-P(sol) polarization free energy of solvation -29.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds