Wall clock time and date at job start Mon Mar 30 2020 02:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30887 * 1 3 3 Si 1.86797 * 119.99961 * 2 1 4 4 H 1.48501 * 109.47039 * 239.99663 * 3 2 1 5 5 H 1.48499 * 109.47462 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47070 * 119.99746 * 3 2 1 7 7 C 1.39886 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00097 * 197.79935 * 7 2 1 9 9 C 1.41223 * 119.99936 * 17.80499 * 7 2 1 10 10 C 1.40851 * 120.17597 * 204.45640 * 9 7 2 11 11 C 1.36422 * 119.80798 * 180.02562 * 10 9 7 12 12 C 1.39331 * 120.18686 * 0.02562 * 11 10 9 13 13 O 1.35675 * 119.81594 * 179.97438 * 12 11 10 14 14 C 1.39288 * 120.36280 * 359.95525 * 12 11 10 15 15 C 1.50699 * 119.90807 * 179.97438 * 14 12 11 16 16 H 1.09007 * 112.78522 * 316.30371 * 15 14 12 17 17 C 1.53632 * 113.51654 * 87.06631 * 15 14 12 18 18 C 1.53517 * 83.53398 * 140.76267 * 17 15 14 19 19 N 1.47475 * 87.99704 * 334.02568 * 18 17 15 20 20 C 1.36454 * 120.18822 * 0.27872 * 14 12 11 21 21 H 0.96999 * 119.99862 * 0.02562 * 1 2 3 22 22 H 1.07997 * 120.09696 * 0.03921 * 10 9 7 23 23 H 1.08002 * 119.90222 * 180.02562 * 11 10 9 24 24 H 0.96704 * 113.99700 * 269.97711 * 13 12 11 25 25 H 1.09003 * 114.16672 * 27.13689 * 17 15 14 26 26 H 1.08992 * 114.20882 * 254.39326 * 17 15 14 27 27 H 1.08999 * 113.47265 * 219.23198 * 18 17 15 28 28 H 1.08998 * 113.47547 * 88.82863 * 18 17 15 29 29 H 1.00903 * 111.00012 * 138.67212 * 19 18 17 30 30 H 1.08002 * 120.09635 * 179.74847 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0967 1.6963 -1.2125 5 1 1.2779 2.7465 -0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0083 -1.2115 0.0005 8 1 3.0494 -1.2338 0.2864 9 6 1.3528 -2.4053 -0.3729 10 6 1.8276 -3.6482 0.0896 11 6 1.1890 -4.7968 -0.2763 12 6 0.0705 -4.7430 -1.1053 13 8 -0.5585 -5.8901 -1.4649 14 6 -0.4056 -3.5180 -1.5667 15 6 -1.6159 -3.4717 -2.4634 16 1 -1.5930 -4.2333 -3.2430 17 6 -2.9459 -3.4232 -1.6961 18 6 -3.3500 -2.4412 -2.8047 19 7 -1.9201 -2.1208 -2.9707 20 6 0.2244 -2.3601 -1.2140 21 1 -0.4850 0.8400 -0.0004 22 1 2.6946 -3.6916 0.7321 23 1 1.5515 -5.7506 0.0778 24 1 -0.2184 -6.2867 -2.2787 25 1 -2.8736 -2.9733 -0.7059 26 1 -3.5020 -4.3606 -1.7058 27 1 -3.9443 -1.6011 -2.4451 28 1 -3.7903 -2.9267 -3.6756 29 1 -1.6790 -2.0383 -3.9470 30 1 -0.1436 -1.4114 -1.5759 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104456287.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:00 Heat of formation + Delta-G solvation = -13.733747 kcal Electronic energy + Delta-G solvation = -14641.231515 eV Core-core repulsion = 12208.312683 eV Total energy + Delta-G solvation = -2432.918833 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.99396 -39.22322 -37.40639 -35.05843 -31.90485 -30.81704 -28.58104 -26.80504 -26.08784 -22.92813 -22.18225 -20.32123 -19.07359 -18.81907 -17.85674 -17.06767 -16.21292 -15.87170 -15.84908 -14.94103 -14.41097 -14.18408 -13.63982 -13.47428 -13.30219 -12.89115 -12.74164 -12.53955 -12.37925 -12.16272 -12.01753 -11.72291 -11.51841 -10.99540 -10.60049 -9.76138 -9.25610 -9.09331 -8.58524 -6.26185 0.87662 1.14987 1.38986 1.49553 1.52688 2.22549 2.69350 3.31441 3.61808 3.72530 3.89345 4.11670 4.31141 4.43667 4.48331 4.58909 4.84502 4.91045 4.97338 5.16398 5.20292 5.25810 5.46559 5.48994 5.71533 5.87672 6.13475 6.19212 6.40760 6.51437 6.69459 6.94332 6.98353 7.35308 8.36015 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.027208 B = 0.011089 C = 0.008261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.859082 B = 2524.395411 C = 3388.710890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.036 3.964 3 Si 0.980 3.020 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.499 4.499 8 H 0.074 0.926 9 C 0.068 3.932 10 C -0.240 4.240 11 C -0.116 4.116 12 C -0.036 4.036 13 O -0.500 6.500 14 C -0.087 4.087 15 C 0.087 3.913 16 H 0.090 0.910 17 C -0.129 4.129 18 C 0.013 3.987 19 N -0.637 5.637 20 C -0.152 4.152 21 H 0.287 0.713 22 H 0.098 0.902 23 H 0.116 0.884 24 H 0.377 0.623 25 H 0.058 0.942 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.321 0.679 30 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.899 -2.853 -6.311 7.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.180 4.180 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.528 4.528 8 H 0.092 0.908 9 C 0.066 3.934 10 C -0.260 4.260 11 C -0.135 4.135 12 C -0.081 4.081 13 O -0.309 6.309 14 C -0.088 4.088 15 C -0.024 4.024 16 H 0.108 0.892 17 C -0.167 4.167 18 C -0.117 4.117 19 N -0.262 5.262 20 C -0.172 4.172 21 H 0.098 0.902 22 H 0.116 0.884 23 H 0.134 0.866 24 H 0.231 0.769 25 H 0.077 0.923 26 H 0.108 0.892 27 H 0.099 0.901 28 H 0.111 0.889 29 H 0.134 0.866 30 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.230 -1.992 -5.176 6.976 hybrid contribution 0.602 -0.095 -0.789 0.997 sum -3.628 -2.087 -5.965 7.287 Atomic orbital electron populations 1.69916 1.08782 1.30510 1.34227 1.26732 0.95491 1.04326 0.91471 0.85294 0.78809 0.75875 0.79971 1.18522 1.19213 1.18464 1.19745 0.98309 0.92588 1.42128 0.90758 1.18132 0.92553 0.92982 0.89781 1.20791 1.04437 0.93062 1.07715 1.20783 0.95384 0.97730 0.99599 1.17916 0.97939 0.84742 1.07504 1.84751 1.61338 1.37918 1.46863 1.19654 0.96945 0.92815 0.99421 1.21834 0.93019 0.91316 0.96238 0.89207 1.23038 0.95526 1.00085 0.98016 1.23479 0.91313 0.98556 0.98308 1.67343 1.08616 1.27413 1.22845 1.21054 0.98104 0.98006 1.00012 0.90220 0.88366 0.86599 0.76935 0.92327 0.89228 0.90127 0.88924 0.86622 0.85434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.52 10.96 21.82 0.24 -43.29 16 2 C 0.04 1.86 5.13 85.23 0.44 2.30 16 3 Si 0.98 39.12 29.60 68.60 2.03 41.15 16 4 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 5 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 6 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 7 C -0.50 -27.67 9.04 23.40 0.21 -27.46 16 8 H 0.07 3.97 7.91 -2.91 -0.02 3.94 16 9 C 0.07 3.80 5.57 -21.28 -0.12 3.68 16 10 C -0.24 -12.37 9.74 22.49 0.22 -12.15 16 11 C -0.12 -5.42 9.92 22.11 0.22 -5.20 16 12 C -0.04 -1.62 6.70 22.79 0.15 -1.46 16 13 O -0.50 -18.68 12.85 -89.93 -1.16 -19.83 16 14 C -0.09 -4.09 5.34 -20.03 -0.11 -4.19 16 15 C 0.09 3.22 3.79 41.48 0.16 3.37 16 16 H 0.09 2.86 8.08 -2.38 -0.02 2.84 16 17 C -0.13 -4.43 8.01 30.98 0.25 -4.18 16 18 C 0.01 0.38 8.61 83.58 0.72 1.10 16 19 N -0.64 -22.86 7.16 -522.58 -3.74 -26.60 16 20 C -0.15 -8.19 8.04 22.48 0.18 -8.01 16 21 H 0.29 14.11 8.30 -92.71 -0.77 13.34 16 22 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 23 H 0.12 4.71 8.06 -2.91 -0.02 4.68 16 24 H 0.38 10.25 9.06 -74.05 -0.67 9.58 16 25 H 0.06 2.42 8.11 -2.39 -0.02 2.40 16 26 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 27 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.32 9.86 8.91 -89.69 -0.80 9.06 16 30 H 0.13 7.16 5.21 -2.91 -0.02 7.14 16 Total: -1.00 -63.82 257.92 -0.61 -64.42 By element: Atomic # 1 Polarization: 36.65 SS G_CDS: -0.30 Total: 36.35 kcal Atomic # 6 Polarization: -54.52 SS G_CDS: 2.32 Total: -52.20 kcal Atomic # 7 Polarization: -66.39 SS G_CDS: -3.50 Total: -69.89 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -1.16 Total: -19.83 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -63.82 -0.61 -64.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104456287.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.691 kcal (2) G-P(sol) polarization free energy of solvation -63.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds