Wall clock time and date at job start Mon Mar 30 2020 02:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99922 * 2 1 4 4 H 1.48499 * 109.47065 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47251 * 300.00312 * 3 2 1 6 6 H 1.48503 * 109.47260 * 60.00482 * 3 2 1 7 7 C 1.37878 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99696 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00194 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.47904 * 111.00081 * 170.19031 * 10 9 7 12 12 C 1.54594 * 102.63710 * 94.53698 * 11 10 9 13 13 C 1.51589 * 102.86545 * 25.60461 * 12 11 10 14 14 C 1.37939 * 131.49347 * 163.77262 * 13 12 11 15 15 C 1.38707 * 120.04021 * 180.16848 * 14 13 12 16 16 O 1.36001 * 120.12049 * 180.22483 * 15 14 13 17 17 C 1.38719 * 119.76900 * 0.45270 * 15 14 13 18 18 C 1.37911 * 120.20219 * 359.37842 * 17 15 14 19 19 C 1.38923 * 107.97665 * 343.93403 * 13 12 11 20 20 H 0.97000 * 119.99737 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.47678 * 59.99712 * 9 7 2 22 22 H 1.09002 * 109.47195 * 299.99887 * 9 7 2 23 23 H 1.09003 * 110.78303 * 212.82386 * 11 10 9 24 24 H 1.08998 * 110.77825 * 336.25322 * 11 10 9 25 25 H 1.09004 * 110.73611 * 143.94823 * 12 11 10 26 26 H 1.09001 * 110.73703 * 267.08312 * 12 11 10 27 27 H 1.07999 * 119.98112 * 0.42834 * 14 13 12 28 28 H 0.96702 * 114.00179 * 270.23270 * 16 15 14 29 29 H 1.08002 * 119.90351 * 179.66168 * 17 15 14 30 30 H 1.08000 * 119.86628 * 180.32408 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5160 -4.9027 0.2347 12 6 1.2680 -5.4208 -1.2005 13 6 2.3664 -4.7456 -1.9977 14 6 2.8759 -5.0047 -3.2531 15 6 3.9041 -4.2238 -3.7599 16 8 4.4045 -4.4750 -4.9993 17 6 4.4235 -3.1887 -2.9964 18 6 3.9120 -2.9272 -1.7426 19 6 2.8750 -3.7050 -1.2307 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5568 -0.8902 22 1 0.6248 -2.5571 0.8897 23 1 2.1566 -5.5893 0.7883 24 1 0.5725 -4.7459 0.7576 25 1 1.3713 -6.5051 -1.2427 26 1 0.2846 -5.1142 -1.5570 27 1 2.4711 -5.8135 -3.8434 28 1 5.1399 -5.1030 -5.0068 29 1 5.2278 -2.5828 -3.3867 30 1 4.3169 -2.1166 -1.1549 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108241821.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:02 Heat of formation + Delta-G solvation = -4.251058 kcal Electronic energy + Delta-G solvation = -14546.992745 eV Core-core repulsion = 12114.485112 eV Total energy + Delta-G solvation = -2432.507632 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.17785 -37.89343 -34.82005 -33.05693 -31.45287 -28.73730 -28.08959 -26.34103 -22.79775 -22.51958 -20.88280 -20.20036 -17.63688 -16.64452 -15.81332 -15.34450 -14.98140 -14.74894 -14.23552 -13.36104 -13.31612 -12.67979 -12.39620 -12.19546 -12.00729 -11.61797 -11.34396 -11.15326 -11.03593 -10.71417 -10.57117 -10.14657 -9.80836 -9.27940 -8.65934 -8.37219 -8.30665 -7.04153 -6.08548 -4.10117 1.74235 1.84802 3.28933 3.36243 3.40237 4.06756 4.32286 4.45038 4.70918 5.07848 5.27951 5.32216 5.46430 5.51230 5.75073 5.78879 6.11140 6.14141 6.21522 6.32807 6.53988 6.61278 6.84649 6.95008 7.11613 7.17237 7.29195 7.70526 7.90953 7.99990 8.15460 8.36962 8.95405 9.53914 11.02474 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.027851 B = 0.009967 C = 0.007960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.122303 B = 2808.456812 C = 3516.760040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.511 4.511 8 H 0.067 0.933 9 C 0.196 3.804 10 N -0.497 5.497 11 C 0.047 3.953 12 C -0.105 4.105 13 C -0.144 4.144 14 C -0.117 4.117 15 C 0.065 3.935 16 O -0.500 6.500 17 C -0.130 4.130 18 C -0.087 4.087 19 C 0.133 3.867 20 H 0.262 0.738 21 H 0.000 1.000 22 H 0.038 0.962 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.117 0.883 28 H 0.378 0.622 29 H 0.125 0.875 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.945 -9.954 -4.068 12.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.549 4.549 8 H 0.085 0.915 9 C 0.074 3.926 10 N -0.214 5.214 11 C -0.081 4.081 12 C -0.143 4.143 13 C -0.147 4.147 14 C -0.136 4.136 15 C 0.020 3.980 16 O -0.308 6.308 17 C -0.149 4.149 18 C -0.107 4.107 19 C 0.035 3.965 20 H 0.071 0.929 21 H 0.018 0.982 22 H 0.056 0.944 23 H 0.095 0.905 24 H 0.099 0.901 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.135 0.865 28 H 0.232 0.768 29 H 0.143 0.857 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.651 -9.289 -3.758 11.504 hybrid contribution 0.121 0.512 -0.521 0.740 sum 5.772 -8.777 -4.279 11.343 Atomic orbital electron populations 1.69957 1.06076 1.26845 1.50766 1.24969 0.94883 0.99362 0.95225 0.86436 0.80114 0.83320 0.77580 1.19546 1.20998 1.20929 1.21197 0.93653 0.89694 1.50394 0.91499 1.19908 0.89299 0.86608 0.96757 1.60391 1.28296 1.04722 1.27982 1.23123 0.98710 0.91099 0.95150 1.21652 0.97141 0.99886 0.95623 1.20880 0.98615 1.00710 0.94450 1.20415 0.98364 1.00306 0.94488 1.18119 0.97321 0.97243 0.85300 1.84884 1.53483 1.66890 1.25560 1.21111 1.01188 0.98649 0.93975 1.20549 0.95693 0.99390 0.95075 1.19644 0.93883 0.93608 0.89327 0.92855 0.98216 0.94437 0.90502 0.90105 0.90574 0.90360 0.86501 0.76820 0.85734 0.84988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 7 C -0.51 -14.26 8.45 -34.44 -0.29 -14.55 16 8 H 0.07 1.83 5.97 -52.48 -0.31 1.52 16 9 C 0.20 5.11 4.51 -4.98 -0.02 5.08 16 10 N -0.50 -10.98 5.06 -170.32 -0.86 -11.85 16 11 C 0.05 0.82 7.00 -2.43 -0.02 0.81 16 12 C -0.10 -1.71 6.97 -26.61 -0.19 -1.89 16 13 C -0.14 -2.68 6.23 -104.04 -0.65 -3.33 16 14 C -0.12 -1.98 9.97 -39.52 -0.39 -2.37 16 15 C 0.06 1.08 6.71 -39.23 -0.26 0.82 16 16 O -0.50 -7.14 13.51 -19.74 -0.27 -7.40 16 17 C -0.13 -2.27 9.96 -39.52 -0.39 -2.67 16 18 C -0.09 -1.75 9.21 -39.28 -0.36 -2.11 16 19 C 0.13 2.80 5.32 -83.29 -0.44 2.36 16 20 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 21 H 0.00 0.00 8.06 -51.93 -0.42 -0.42 16 22 H 0.04 1.02 7.85 -51.93 -0.41 0.61 16 23 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.08 1.36 7.60 -51.93 -0.39 0.97 16 25 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 28 H 0.38 3.33 9.06 45.56 0.41 3.75 16 29 H 0.12 1.88 8.06 -52.49 -0.42 1.45 16 30 H 0.13 2.71 6.59 -52.49 -0.35 2.36 16 LS Contribution 256.49 15.07 3.87 3.87 Total: -1.00 -31.52 256.49 -7.38 -38.90 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -2.72 Total: 1.99 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -3.12 Total: -16.32 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: -0.12 Total: -37.66 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.27 Total: -7.40 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.52 -7.38 -38.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108241821.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.652 kcal (2) G-P(sol) polarization free energy of solvation -31.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds