Wall clock time and date at job start Mon Mar 30 2020 02:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99922 * 2 1 4 4 H 1.48499 * 109.47065 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47251 * 300.00312 * 3 2 1 6 6 H 1.48503 * 109.47260 * 60.00482 * 3 2 1 7 7 C 1.37878 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99696 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00194 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.47904 * 111.00081 * 170.19031 * 10 9 7 12 12 C 1.54594 * 102.63710 * 94.53698 * 11 10 9 13 13 C 1.51589 * 102.86545 * 25.60461 * 12 11 10 14 14 C 1.37939 * 131.49347 * 163.77262 * 13 12 11 15 15 C 1.38707 * 120.04021 * 180.16848 * 14 13 12 16 16 O 1.36001 * 120.12049 * 180.22483 * 15 14 13 17 17 C 1.38719 * 119.76900 * 0.45270 * 15 14 13 18 18 C 1.37911 * 120.20219 * 359.37842 * 17 15 14 19 19 C 1.38923 * 107.97665 * 343.93403 * 13 12 11 20 20 H 0.97000 * 119.99737 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.47678 * 59.99712 * 9 7 2 22 22 H 1.09002 * 109.47195 * 299.99887 * 9 7 2 23 23 H 1.09003 * 110.78303 * 212.82386 * 11 10 9 24 24 H 1.08998 * 110.77825 * 336.25322 * 11 10 9 25 25 H 1.09004 * 110.73611 * 143.94823 * 12 11 10 26 26 H 1.09001 * 110.73703 * 267.08312 * 12 11 10 27 27 H 1.07999 * 119.98112 * 0.42834 * 14 13 12 28 28 H 0.96702 * 114.00179 * 270.23270 * 16 15 14 29 29 H 1.08002 * 119.90351 * 179.66168 * 17 15 14 30 30 H 1.08000 * 119.86628 * 180.32408 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5160 -4.9027 0.2347 12 6 1.2680 -5.4208 -1.2005 13 6 2.3664 -4.7456 -1.9977 14 6 2.8759 -5.0047 -3.2531 15 6 3.9041 -4.2238 -3.7599 16 8 4.4045 -4.4750 -4.9993 17 6 4.4235 -3.1887 -2.9964 18 6 3.9120 -2.9272 -1.7426 19 6 2.8750 -3.7050 -1.2307 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5568 -0.8902 22 1 0.6248 -2.5571 0.8897 23 1 2.1566 -5.5893 0.7883 24 1 0.5725 -4.7459 0.7576 25 1 1.3713 -6.5051 -1.2427 26 1 0.2846 -5.1142 -1.5570 27 1 2.4711 -5.8135 -3.8434 28 1 5.1399 -5.1030 -5.0068 29 1 5.2278 -2.5828 -3.3867 30 1 4.3169 -2.1166 -1.1549 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108241821.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:02 Heat of formation + Delta-G solvation = -26.796032 kcal Electronic energy + Delta-G solvation = -14547.970368 eV Core-core repulsion = 12114.485112 eV Total energy + Delta-G solvation = -2433.485256 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.62624 -39.20232 -36.23917 -35.03143 -33.07335 -30.34262 -29.49365 -28.17992 -24.66326 -23.97374 -22.25413 -21.75201 -18.87129 -18.65285 -17.38480 -16.92092 -16.50544 -16.28141 -15.77783 -14.90743 -14.85664 -14.34988 -14.08574 -13.81534 -13.46169 -13.20838 -12.88894 -12.82379 -12.62485 -12.43490 -12.22578 -11.88361 -11.36692 -11.17383 -10.69725 -10.02550 -9.75205 -8.60834 -8.24209 -6.33606 0.33834 0.44240 1.38244 1.38629 1.51843 2.36917 2.66953 3.00839 3.09270 3.35537 3.73917 3.96509 4.17018 4.17986 4.41567 4.47295 4.69830 4.75163 4.87938 4.98567 4.99957 5.11700 5.17146 5.37017 5.46605 5.55108 5.71746 5.78947 5.98989 6.35810 6.51734 6.80764 6.95635 7.35240 8.87117 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.027851 B = 0.009967 C = 0.007960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.122303 B = 2808.456812 C = 3516.760040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.965 3.035 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.066 0.934 9 C 0.215 3.785 10 N -0.511 5.511 11 C 0.042 3.958 12 C -0.098 4.098 13 C -0.146 4.146 14 C -0.119 4.119 15 C 0.081 3.919 16 O -0.502 6.502 17 C -0.135 4.135 18 C -0.106 4.106 19 C 0.089 3.911 20 H 0.265 0.735 21 H -0.034 1.034 22 H 0.015 0.985 23 H 0.101 0.899 24 H 0.079 0.921 25 H 0.115 0.885 26 H 0.071 0.929 27 H 0.146 0.854 28 H 0.407 0.593 29 H 0.147 0.853 30 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.188 -10.895 -5.356 14.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.195 4.195 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.084 0.916 9 C 0.091 3.909 10 N -0.229 5.229 11 C -0.085 4.085 12 C -0.136 4.136 13 C -0.149 4.149 14 C -0.138 4.138 15 C 0.037 3.963 16 O -0.314 6.314 17 C -0.154 4.154 18 C -0.125 4.125 19 C -0.008 4.008 20 H 0.074 0.926 21 H -0.016 1.016 22 H 0.033 0.967 23 H 0.119 0.881 24 H 0.098 0.902 25 H 0.134 0.866 26 H 0.090 0.910 27 H 0.164 0.836 28 H 0.265 0.735 29 H 0.165 0.835 30 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.931 -10.271 -5.056 13.383 hybrid contribution -0.205 0.706 -0.230 0.770 sum 6.727 -9.565 -5.286 12.833 Atomic orbital electron populations 1.70078 1.07644 1.27875 1.51769 1.25874 0.95753 1.03083 0.94772 0.85387 0.79160 0.78715 0.77762 1.18536 1.20586 1.20127 1.21523 0.93810 0.90869 1.49978 0.91580 1.19472 0.89329 0.88157 0.93924 1.60296 1.27814 1.05308 1.29495 1.23288 0.98932 0.89640 0.96610 1.21662 0.95991 1.01992 0.93920 1.21184 0.98779 0.99939 0.95006 1.20732 0.98102 1.00982 0.93983 1.18173 0.96563 0.96167 0.85439 1.84812 1.54795 1.67982 1.23812 1.21324 1.01680 0.99290 0.93062 1.20618 0.96303 0.99359 0.96269 1.19856 0.95276 0.95737 0.89916 0.92642 1.01623 0.96651 0.88076 0.90220 0.86648 0.91014 0.83611 0.73472 0.83536 0.86655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.52 -30.09 8.45 25.60 0.22 -29.87 16 8 H 0.07 3.72 5.97 -2.91 -0.02 3.71 16 9 C 0.21 11.66 4.51 85.56 0.39 12.04 16 10 N -0.51 -23.11 5.06 -692.78 -3.50 -26.62 16 11 C 0.04 1.46 7.00 86.65 0.61 2.07 16 12 C -0.10 -3.03 6.97 30.67 0.21 -2.81 16 13 C -0.15 -5.25 6.23 -19.49 -0.12 -5.38 16 14 C -0.12 -3.70 9.97 22.31 0.22 -3.48 16 15 C 0.08 2.49 6.71 22.50 0.15 2.64 16 16 O -0.50 -12.32 13.51 -93.56 -1.26 -13.59 16 17 C -0.13 -4.50 9.96 22.31 0.22 -4.27 16 18 C -0.11 -4.27 9.21 22.46 0.21 -4.06 16 19 C 0.09 3.77 5.32 38.22 0.20 3.97 16 20 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 21 H -0.03 -2.03 8.06 -2.39 -0.02 -2.05 16 22 H 0.02 0.88 7.85 -2.39 -0.02 0.86 16 23 H 0.10 2.98 8.14 -2.39 -0.02 2.97 16 24 H 0.08 2.73 7.60 -2.39 -0.02 2.71 16 25 H 0.12 2.64 8.14 -2.38 -0.02 2.62 16 26 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 28 H 0.41 5.33 9.06 -74.06 -0.67 4.66 16 29 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 30 H 0.12 4.90 6.59 -2.91 -0.02 4.88 16 Total: -1.00 -68.97 256.49 0.79 -68.17 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.48 Total: 9.97 kcal Atomic # 6 Polarization: -31.26 SS G_CDS: 2.77 Total: -28.49 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -3.22 Total: -82.95 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -1.26 Total: -13.59 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -68.97 0.79 -68.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108241821.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.377 kcal (2) G-P(sol) polarization free energy of solvation -68.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds