Wall clock time and date at job start Mon Mar 30 2020 02:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86802 * 119.99911 * 2 1 4 4 H 1.48495 * 109.47059 * 274.80596 * 3 2 1 5 5 H 1.48503 * 109.46785 * 34.80338 * 3 2 1 6 6 H 1.48497 * 109.47486 * 154.80340 * 3 2 1 7 7 C 1.39890 * 120.00512 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00349 * 160.66797 * 7 2 1 9 9 C 1.41215 * 119.99971 * 340.67557 * 7 2 1 10 10 C 1.40839 * 120.18044 * 156.80829 * 9 7 2 11 11 C 1.36438 * 119.81040 * 180.02562 * 10 9 7 12 12 C 1.39311 * 120.18481 * 0.02562 * 11 10 9 13 13 O 1.35677 * 119.81847 * 179.97438 * 12 11 10 14 14 C 1.42897 * 117.00297 * 185.62276 * 13 12 11 15 15 C 1.53933 * 113.73212 * 156.75254 * 14 13 12 16 16 N 1.47957 * 86.17768 * 138.07962 * 15 14 13 17 17 C 1.47948 * 90.76633 * 335.31009 * 16 15 14 18 18 C 1.39316 * 120.36805 * 0.25795 * 12 11 10 19 19 C 1.36441 * 120.18088 * 359.47509 * 18 12 11 20 20 H 0.96998 * 120.00469 * 0.02562 * 1 2 3 21 21 H 1.07998 * 120.09242 * 0.02562 * 10 9 7 22 22 H 1.08000 * 119.90316 * 179.97438 * 11 10 9 23 23 H 1.08998 * 113.00777 * 25.11963 * 14 13 12 24 24 H 1.09005 * 113.76154 * 252.39380 * 15 14 13 25 25 H 1.09002 * 113.76086 * 23.76652 * 15 14 13 26 26 H 1.00904 * 111.00003 * 88.20495 * 16 15 14 27 27 H 1.09004 * 113.76071 * 270.37149 * 17 16 15 28 28 H 1.09002 * 113.86542 * 139.02089 * 17 16 15 29 29 H 1.08001 * 119.90876 * 179.72206 * 18 12 11 30 30 H 1.07993 * 120.09193 * 180.25925 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.3887 2.1051 -1.3951 5 1 1.4946 2.6212 0.7991 6 1 3.5874 1.4131 0.5960 7 6 2.0084 -1.2114 0.0005 8 1 3.0427 -1.2379 -0.3091 9 6 1.3620 -2.3998 0.4058 10 6 1.8425 -3.6505 -0.0284 11 6 1.2119 -4.7939 0.3673 12 6 0.0956 -4.7266 1.1980 13 8 -0.5261 -5.8683 1.5865 14 6 -1.7350 -5.7263 2.3350 15 6 -2.6597 -6.9545 2.2572 16 7 -2.8807 -6.7563 3.7067 17 6 -1.5812 -6.0599 3.8298 18 6 -0.3897 -3.4932 1.6271 19 6 0.2326 -2.3406 1.2450 20 1 -0.4851 0.8400 -0.0004 21 1 2.7076 -3.7043 -0.6726 22 1 1.5789 -5.7537 0.0350 23 1 -2.2443 -4.7812 2.1465 24 1 -3.5516 -6.7952 1.6511 25 1 -2.1394 -7.8813 2.0150 26 1 -3.6479 -6.1221 3.8721 27 1 -0.7454 -6.7250 4.0476 28 1 -1.6092 -5.1856 4.4801 29 1 -1.2584 -3.4494 2.2673 30 1 -0.1423 -1.3855 1.5819 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118588412.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:33 Heat of formation + Delta-G solvation = 19.315310 kcal Electronic energy + Delta-G solvation = -14165.102452 eV Core-core repulsion = 11733.616735 eV Total energy + Delta-G solvation = -2431.485718 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.84130 -37.87267 -35.83530 -33.32198 -29.70100 -29.20855 -26.39965 -25.96004 -24.65202 -21.65074 -20.87332 -19.64545 -17.52959 -17.24292 -16.35654 -15.47718 -14.72222 -14.51052 -14.00955 -13.24156 -13.06640 -12.89948 -12.44475 -12.23269 -11.95010 -11.80614 -11.33063 -11.17046 -11.09965 -10.91185 -10.47673 -9.96751 -9.80244 -9.39635 -9.00893 -8.66849 -7.69039 -7.06207 -6.77947 -4.28135 2.72672 2.93291 3.05659 3.09511 3.18655 3.91689 4.00287 4.14578 4.54388 4.70709 4.94706 5.43885 5.58713 5.63453 5.66628 5.78889 5.92867 6.03939 6.15335 6.24236 6.69884 6.86688 7.02877 7.21097 7.25107 7.39003 7.52261 7.87464 7.96557 8.11974 8.41262 8.61772 8.86260 8.95865 10.16404 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.054877 B = 0.006429 C = 0.005991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.107243 B = 4354.354892 C = 4672.648063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.462 4.462 8 H 0.078 0.922 9 C 0.087 3.913 10 C -0.198 4.198 11 C -0.111 4.111 12 C -0.016 4.016 13 O -0.314 6.314 14 C 0.022 3.978 15 C 0.022 3.978 16 N -0.654 5.654 17 C 0.001 3.999 18 C -0.173 4.173 19 C -0.136 4.136 20 H 0.280 0.720 21 H 0.100 0.900 22 H 0.097 0.903 23 H 0.093 0.907 24 H 0.076 0.924 25 H 0.104 0.896 26 H 0.335 0.665 27 H 0.104 0.896 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.682 -4.514 3.792 6.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.492 4.492 8 H 0.096 0.904 9 C 0.085 3.915 10 C -0.218 4.218 11 C -0.130 4.130 12 C -0.059 4.059 13 O -0.228 6.228 14 C -0.037 4.037 15 C -0.108 4.108 16 N -0.282 5.282 17 C -0.129 4.129 18 C -0.191 4.191 19 C -0.156 4.156 20 H 0.090 0.910 21 H 0.118 0.882 22 H 0.115 0.885 23 H 0.111 0.889 24 H 0.095 0.905 25 H 0.122 0.878 26 H 0.149 0.851 27 H 0.122 0.878 28 H 0.092 0.908 29 H 0.111 0.889 30 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.727 -5.300 4.109 7.672 hybrid contribution 0.033 2.014 -0.455 2.066 sum -3.694 -3.286 3.653 6.148 Atomic orbital electron populations 1.69845 1.07617 1.29132 1.35790 1.25892 0.94678 1.01321 0.92255 0.86336 0.80822 0.80753 0.79040 1.19596 1.20089 1.18409 1.19485 0.98703 0.91427 1.39545 0.90418 1.17605 0.91786 0.92170 0.89921 1.20594 1.03338 0.92129 1.05732 1.19633 0.95930 0.97676 0.99749 1.18601 0.98110 0.84103 1.05104 1.85946 1.36239 1.30525 1.70115 1.25764 0.87100 0.99488 0.91340 1.24001 0.98075 0.98940 0.89776 1.65139 1.04200 1.42443 1.16423 1.24307 0.93846 0.98400 0.96364 1.20574 1.01191 0.92920 1.04454 1.20947 0.98563 0.96566 0.99495 0.90961 0.88201 0.88520 0.88902 0.90528 0.87756 0.85052 0.87821 0.90765 0.88930 0.86090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.49 10.95 55.54 0.61 -19.88 16 2 C 0.08 1.89 5.12 -17.34 -0.09 1.80 16 3 Si 0.91 18.50 29.60 -169.99 -5.03 13.47 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 6 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.46 -12.21 9.04 -37.83 -0.34 -12.55 16 8 H 0.08 1.97 7.92 -52.49 -0.42 1.55 16 9 C 0.09 2.33 5.59 -106.80 -0.60 1.74 16 10 C -0.20 -4.89 9.74 -39.25 -0.38 -5.28 16 11 C -0.11 -2.59 9.92 -39.83 -0.40 -2.99 16 12 C -0.02 -0.37 6.71 -38.78 -0.26 -0.63 16 13 O -0.31 -6.41 10.14 -18.73 -0.19 -6.60 16 14 C 0.02 0.36 3.85 -25.80 -0.10 0.26 16 15 C 0.02 0.29 8.73 -2.77 -0.02 0.27 16 16 N -0.65 -8.37 8.55 -117.27 -1.00 -9.37 16 17 C 0.00 0.01 8.73 -2.77 -0.02 -0.02 16 18 C -0.17 -4.04 8.95 -39.83 -0.36 -4.39 16 19 C -0.14 -3.53 8.66 -39.25 -0.34 -3.87 16 20 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 21 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 22 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 23 H 0.09 1.52 5.91 -51.93 -0.31 1.22 16 24 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 26 H 0.34 3.61 8.89 -39.29 -0.35 3.26 16 27 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.09 1.92 5.87 -52.49 -0.31 1.61 16 30 H 0.12 3.21 6.11 -52.49 -0.32 2.89 16 LS Contribution 257.28 15.07 3.88 3.88 Total: -1.00 -27.90 257.28 -8.02 -35.92 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -3.37 Total: 8.24 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: -2.91 Total: -25.66 kcal Atomic # 7 Polarization: -28.86 SS G_CDS: -0.39 Total: -29.25 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.19 Total: -6.60 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.90 -8.02 -35.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118588412.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.236 kcal (2) G-P(sol) polarization free energy of solvation -27.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds