Wall clock time and date at job start Mon Mar 30 2020 03:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.36231 * 119.42348 * 269.72509 * 10 9 7 12 12 C 1.35345 * 120.29702 * 179.74696 * 11 10 9 13 13 C 1.40508 * 119.85911 * 0.52041 * 12 11 10 14 14 C 1.36243 * 119.58143 * 359.74542 * 13 12 11 15 15 C 1.34452 * 119.42932 * 90.00016 * 10 9 7 16 16 O 1.22063 * 120.01505 * 359.95980 * 15 10 9 17 17 C 1.51417 * 110.27034 * 180.31654 * 12 11 10 18 18 C 1.54386 * 105.02937 * 17.27434 * 17 12 11 19 19 C 1.51540 * 129.60206 * 0.54678 * 11 10 9 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.07996 * 120.20868 * 179.71985 * 13 12 11 24 24 H 1.08004 * 120.43086 * 180.02562 * 14 13 12 25 25 H 1.09005 * 110.32926 * 136.15941 * 17 12 11 26 26 H 1.08999 * 110.33445 * 258.38411 * 17 12 11 27 27 H 1.09000 * 110.93632 * 92.23165 * 18 17 12 28 28 H 1.08994 * 110.93610 * 215.86735 * 18 17 12 29 29 H 1.08997 * 110.45974 * 43.52597 * 19 11 10 30 30 H 1.08992 * 110.21558 * 281.40294 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 2.6335 -4.1198 -1.1990 12 6 3.5167 -5.1450 -1.2242 13 6 3.9833 -5.6961 -0.0188 14 6 3.5450 -5.1884 1.1670 15 6 2.6320 -4.1200 1.1586 16 8 2.2292 -3.6526 2.2118 17 6 3.8435 -5.5209 -2.6541 18 6 3.3883 -4.3122 -3.4998 19 6 2.2845 -3.6984 -2.6122 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 4.6846 -6.5172 -0.0323 24 1 3.8950 -5.6013 2.1016 25 1 4.9157 -5.6806 -2.7681 26 1 3.2935 -6.4157 -2.9456 27 1 4.2075 -3.6080 -3.6453 28 1 2.9826 -4.6377 -4.4576 29 1 2.2902 -2.6118 -2.6982 30 1 1.3088 -4.0946 -2.8932 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127702513.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:34 Heat of formation + Delta-G solvation = -14.006784 kcal Electronic energy + Delta-G solvation = -14708.857977 eV Core-core repulsion = 12275.927305 eV Total energy + Delta-G solvation = -2432.930672 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.78711 -37.56497 -34.70215 -33.88121 -32.45488 -28.04571 -27.84592 -27.04852 -23.81602 -22.05386 -21.21503 -20.21701 -16.91268 -16.74081 -16.07701 -15.27365 -15.17431 -14.45404 -14.28256 -13.52247 -13.34500 -12.68554 -12.36319 -12.23812 -11.76594 -11.54807 -11.29749 -11.14636 -11.01796 -10.93897 -10.68893 -10.31438 -10.22445 -9.91531 -9.03733 -8.93690 -8.59440 -7.06516 -6.21003 -4.27525 1.50585 2.46222 3.22184 3.30334 3.34673 3.59799 4.29541 4.41214 4.70315 4.78812 5.13496 5.18021 5.31581 5.44791 5.53079 5.70447 5.87086 5.96027 5.99137 6.07548 6.28083 6.35055 6.59012 6.76115 6.78432 6.91285 7.18238 7.31941 7.73911 7.94917 8.09879 8.72963 8.95305 9.38003 10.87524 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.028782 B = 0.010351 C = 0.008580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.604578 B = 2704.530083 C = 3262.774177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.531 4.531 8 H 0.061 0.939 9 C 0.216 3.784 10 N -0.462 5.462 11 C 0.184 3.816 12 C -0.255 4.255 13 C -0.002 4.002 14 C -0.265 4.265 15 C 0.511 3.489 16 O -0.553 6.553 17 C -0.054 4.054 18 C -0.116 4.116 19 C -0.086 4.086 20 H 0.266 0.734 21 H 0.059 0.941 22 H 0.046 0.954 23 H 0.121 0.879 24 H 0.139 0.861 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.240 -9.621 -8.154 14.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.570 4.570 8 H 0.079 0.921 9 C 0.098 3.902 10 N -0.167 5.167 11 C 0.069 3.931 12 C -0.260 4.260 13 C -0.024 4.024 14 C -0.287 4.287 15 C 0.313 3.687 16 O -0.436 6.436 17 C -0.092 4.092 18 C -0.154 4.154 19 C -0.124 4.124 20 H 0.076 0.924 21 H 0.077 0.923 22 H 0.064 0.936 23 H 0.139 0.861 24 H 0.157 0.843 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.116 0.884 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.756 -9.131 -7.420 13.098 hybrid contribution 0.413 0.922 0.164 1.023 sum 6.170 -8.209 -7.256 12.574 Atomic orbital electron populations 1.69938 1.06033 1.27379 1.49398 1.24917 0.94955 0.99401 0.94481 0.86337 0.80028 0.82720 0.77805 1.19613 1.20687 1.20607 1.21235 0.93392 0.89760 1.52582 0.92052 1.19886 0.87930 0.82351 1.00054 1.45826 1.37135 1.29319 1.04460 1.21157 0.91660 0.91497 0.88768 1.19723 1.07251 1.03479 0.95571 1.20734 0.94720 0.95981 0.91013 1.21928 1.05624 1.02180 0.98996 1.16945 0.83829 0.84844 0.83084 1.90920 1.60083 1.63271 1.29286 1.20673 1.00854 0.97809 0.89836 1.22284 0.98094 0.97317 0.97686 1.21288 0.99730 1.03472 0.87901 0.92416 0.92296 0.93612 0.86097 0.84284 0.91461 0.91326 0.90694 0.90399 0.88375 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.80 13.29 55.43 0.74 -25.07 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 3 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.53 -15.04 9.38 -34.44 -0.32 -15.36 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.22 5.71 4.91 -5.20 -0.03 5.68 16 10 N -0.46 -10.71 2.57 -116.07 -0.30 -11.00 16 11 C 0.18 3.44 6.75 -81.26 -0.55 2.90 16 12 C -0.26 -4.06 6.11 -104.45 -0.64 -4.70 16 13 C 0.00 -0.04 10.08 -39.44 -0.40 -0.44 16 14 C -0.27 -5.02 10.00 -39.44 -0.39 -5.41 16 15 C 0.51 12.26 7.40 -15.54 -0.11 12.14 16 16 O -0.55 -15.53 16.62 4.86 0.08 -15.45 16 17 C -0.05 -0.63 6.78 -26.80 -0.18 -0.81 16 18 C -0.12 -1.33 7.12 -25.28 -0.18 -1.51 16 19 C -0.09 -1.31 5.86 -26.75 -0.16 -1.47 16 20 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 21 H 0.06 1.75 7.37 -51.93 -0.38 1.37 16 22 H 0.05 1.17 7.44 -51.93 -0.39 0.78 16 23 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 24 H 0.14 2.34 8.06 -52.48 -0.42 1.92 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.10 1.66 8.14 -51.93 -0.42 1.23 16 30 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 259.09 15.07 3.90 3.90 Total: -1.00 -32.73 259.09 -7.35 -40.08 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -3.70 Total: -1.82 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -3.06 Total: -7.23 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.44 Total: -36.07 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: 0.08 Total: -15.45 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -32.73 -7.35 -40.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127702513.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.074 kcal (2) G-P(sol) polarization free energy of solvation -32.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds