Wall clock time and date at job start Mon Mar 30 2020 03:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.36231 * 119.42348 * 269.72509 * 10 9 7 12 12 C 1.35345 * 120.29702 * 179.74696 * 11 10 9 13 13 C 1.40508 * 119.85911 * 0.52041 * 12 11 10 14 14 C 1.36243 * 119.58143 * 359.74542 * 13 12 11 15 15 C 1.34452 * 119.42932 * 90.00016 * 10 9 7 16 16 O 1.22063 * 120.01505 * 359.95980 * 15 10 9 17 17 C 1.51417 * 110.27034 * 180.31654 * 12 11 10 18 18 C 1.54386 * 105.02937 * 17.27434 * 17 12 11 19 19 C 1.51540 * 129.60206 * 0.54678 * 11 10 9 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.07996 * 120.20868 * 179.71985 * 13 12 11 24 24 H 1.08004 * 120.43086 * 180.02562 * 14 13 12 25 25 H 1.09005 * 110.32926 * 136.15941 * 17 12 11 26 26 H 1.08999 * 110.33445 * 258.38411 * 17 12 11 27 27 H 1.09000 * 110.93632 * 92.23165 * 18 17 12 28 28 H 1.08994 * 110.93610 * 215.86735 * 18 17 12 29 29 H 1.08997 * 110.45974 * 43.52597 * 19 11 10 30 30 H 1.08992 * 110.21558 * 281.40294 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 2.6335 -4.1198 -1.1990 12 6 3.5167 -5.1450 -1.2242 13 6 3.9833 -5.6961 -0.0188 14 6 3.5450 -5.1884 1.1670 15 6 2.6320 -4.1200 1.1586 16 8 2.2292 -3.6526 2.2118 17 6 3.8435 -5.5209 -2.6541 18 6 3.3883 -4.3122 -3.4998 19 6 2.2845 -3.6984 -2.6122 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 4.6846 -6.5172 -0.0323 24 1 3.8950 -5.6013 2.1016 25 1 4.9157 -5.6806 -2.7681 26 1 3.2935 -6.4157 -2.9456 27 1 4.2075 -3.6080 -3.6453 28 1 2.9826 -4.6377 -4.4576 29 1 2.2902 -2.6118 -2.6982 30 1 1.3088 -4.0946 -2.8932 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127702513.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:34 Heat of formation + Delta-G solvation = -35.165225 kcal Electronic energy + Delta-G solvation = -14709.775476 eV Core-core repulsion = 12275.927305 eV Total energy + Delta-G solvation = -2433.848171 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.36674 -39.07508 -36.48863 -35.42170 -34.41346 -29.88555 -29.15419 -28.48576 -25.77055 -23.52486 -22.77621 -21.46558 -18.94335 -18.40920 -17.73208 -16.86276 -16.73235 -16.17436 -15.83589 -15.05588 -14.73603 -14.47415 -13.84956 -13.67146 -13.41582 -13.28572 -12.85095 -12.69174 -12.62789 -12.38245 -12.29628 -11.94984 -11.92519 -11.25727 -10.82257 -10.77371 -10.72411 -8.65717 -8.35804 -6.54371 0.04516 0.95270 1.31038 1.34212 1.46278 1.94241 2.30175 2.78507 2.93175 3.41852 3.65085 4.01327 4.19197 4.24945 4.26041 4.42475 4.69560 4.78306 4.91738 4.96138 5.02751 5.12830 5.14918 5.18422 5.37234 5.42819 5.48003 5.53724 5.78276 5.81160 6.40980 6.51127 7.11432 7.23659 8.71020 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.028782 B = 0.010351 C = 0.008580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.604578 B = 2704.530083 C = 3262.774177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.016 3.984 3 Si 0.974 3.026 4 H -0.270 1.270 5 H -0.259 1.259 6 H -0.278 1.278 7 C -0.550 4.550 8 H 0.048 0.952 9 C 0.235 3.765 10 N -0.474 5.474 11 C 0.136 3.864 12 C -0.229 4.229 13 C 0.024 3.976 14 C -0.284 4.284 15 C 0.483 3.517 16 O -0.624 6.624 17 C -0.049 4.049 18 C -0.104 4.104 19 C -0.089 4.089 20 H 0.273 0.727 21 H 0.009 0.991 22 H 0.046 0.954 23 H 0.179 0.821 24 H 0.156 0.844 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.112 0.888 29 H 0.070 0.930 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.615 -11.085 -10.843 17.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.184 4.184 3 Si 0.797 3.203 4 H -0.194 1.194 5 H -0.184 1.184 6 H -0.204 1.204 7 C -0.587 4.587 8 H 0.067 0.933 9 C 0.114 3.886 10 N -0.180 5.180 11 C 0.024 3.976 12 C -0.234 4.234 13 C 0.002 3.998 14 C -0.305 4.305 15 C 0.288 3.712 16 O -0.513 6.513 17 C -0.086 4.086 18 C -0.142 4.142 19 C -0.127 4.127 20 H 0.082 0.918 21 H 0.027 0.973 22 H 0.063 0.937 23 H 0.196 0.804 24 H 0.173 0.827 25 H 0.116 0.884 26 H 0.115 0.885 27 H 0.096 0.904 28 H 0.131 0.869 29 H 0.089 0.911 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.153 -10.636 -10.180 16.830 hybrid contribution -0.313 1.262 0.918 1.591 sum 7.841 -9.374 -9.262 15.334 Atomic orbital electron populations 1.70036 1.07492 1.28716 1.49575 1.25845 0.95910 1.03059 0.93592 0.85275 0.78487 0.77993 0.78529 1.19447 1.18386 1.20407 1.21373 0.92843 0.91146 1.53382 0.93345 1.19331 0.88222 0.83578 0.97431 1.45667 1.37135 1.28912 1.06251 1.22017 0.93562 0.93388 0.88597 1.20556 1.03808 1.00699 0.98315 1.21292 0.93465 0.95780 0.89261 1.21987 1.05538 1.01436 1.01555 1.17855 0.84733 0.86103 0.82475 1.90853 1.63097 1.65928 1.31443 1.20861 1.03196 0.98618 0.85926 1.22345 0.96606 0.97003 0.98241 1.21460 1.02155 1.02202 0.86840 0.91820 0.97252 0.93652 0.80413 0.82666 0.88421 0.88458 0.90402 0.86932 0.91127 0.88295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.23 13.29 21.45 0.28 -54.95 16 2 C 0.02 0.95 5.46 84.66 0.46 1.42 16 3 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.55 -32.75 9.38 25.60 0.24 -32.51 16 8 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 9 C 0.23 13.32 4.91 85.64 0.42 13.74 16 10 N -0.47 -23.08 2.57 -639.37 -1.65 -24.73 16 11 C 0.14 5.03 6.75 41.48 0.28 5.31 16 12 C -0.23 -6.48 6.11 -19.75 -0.12 -6.60 16 13 C 0.02 0.65 10.08 22.36 0.23 0.88 16 14 C -0.28 -10.58 10.00 22.36 0.22 -10.36 16 15 C 0.48 24.40 7.40 84.85 0.63 25.03 16 16 O -0.62 -38.01 16.62 -5.52 -0.09 -38.10 16 17 C -0.05 -0.85 6.78 30.55 0.21 -0.64 16 18 C -0.10 -1.93 7.12 31.53 0.22 -1.70 16 19 C -0.09 -2.60 5.86 30.58 0.18 -2.42 16 20 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 21 H 0.01 0.61 7.37 -2.38 -0.02 0.59 16 22 H 0.05 2.50 7.44 -2.39 -0.02 2.48 16 23 H 0.18 2.97 8.06 -2.91 -0.02 2.94 16 24 H 0.16 5.14 8.06 -2.91 -0.02 5.11 16 25 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 26 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -78.50 259.09 4.67 -73.83 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: 1.13 Total: 4.70 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 2.97 Total: -7.86 kcal Atomic # 7 Polarization: -78.32 SS G_CDS: -1.36 Total: -79.68 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -0.09 Total: -38.10 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -78.50 4.67 -73.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127702513.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.668 kcal (2) G-P(sol) polarization free energy of solvation -78.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds