Wall clock time and date at job start Mon Mar 30 2020 03:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38328 * 120.87263 * 2 1 4 4 C 1.38355 * 119.33505 * 180.27232 * 3 2 1 5 5 N 1.31981 * 121.13948 * 359.72486 * 4 3 2 6 6 C 1.31618 * 121.91162 * 0.02562 * 5 4 3 7 7 C 1.39840 * 120.52425 * 359.97438 * 6 5 4 8 8 C 1.47164 * 120.58399 * 179.97438 * 7 6 5 9 9 O 1.21252 * 119.99654 * 174.10499 * 8 7 6 10 10 C 1.50696 * 120.00298 * 354.10505 * 8 7 6 11 11 H 1.09002 * 109.47145 * 329.99594 * 10 8 7 12 12 C 1.52995 * 109.47177 * 89.99778 * 10 8 7 13 13 C 1.50706 * 109.47221 * 209.99986 * 10 8 7 14 14 H 1.08003 * 119.99701 * 0.02562 * 13 10 8 15 15 C 1.37871 * 119.99986 * 180.27145 * 13 10 8 16 16 N 1.31512 * 119.99984 * 359.72966 * 15 13 10 17 17 Si 1.86801 * 119.99886 * 179.72215 * 15 13 10 18 18 H 1.48499 * 109.47035 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46734 * 120.00233 * 17 15 13 20 20 H 1.48498 * 109.47095 * 240.00119 * 17 15 13 21 21 H 1.09005 * 109.47201 * 263.86680 * 1 2 3 22 22 H 1.09004 * 109.46722 * 23.86136 * 1 2 3 23 23 H 1.08995 * 109.47312 * 143.86180 * 1 2 3 24 24 H 1.08004 * 120.33259 * 0.02562 * 3 2 1 25 25 H 1.07995 * 119.42841 * 179.73886 * 4 3 2 26 26 H 1.08001 * 119.73507 * 180.02562 * 6 5 4 27 27 H 1.09004 * 109.47067 * 179.97438 * 12 10 8 28 28 H 1.09001 * 109.47267 * 300.00029 * 12 10 8 29 29 H 1.09002 * 109.47122 * 60.00414 * 12 10 8 30 30 H 0.97005 * 120.00301 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1873 0.0000 4 6 3.5998 1.1502 -0.0057 5 7 4.2518 0.0026 -0.0058 6 6 3.6240 -1.1542 -0.0009 7 6 2.2265 -1.2039 0.0051 8 6 1.5233 -2.4967 0.0100 9 8 0.3165 -2.5299 0.1230 10 6 2.3030 -3.7791 -0.1255 11 1 3.1994 -3.5985 -0.7187 12 6 2.7031 -4.2818 1.2631 13 6 1.4492 -4.8164 -0.8085 14 1 0.4428 -4.5712 -1.1143 15 6 1.9511 -6.0797 -1.0384 16 7 3.1767 -6.3781 -0.6664 17 14 0.8901 -7.3677 -1.8780 18 1 -0.4384 -6.7847 -2.1948 19 1 1.5486 -7.8093 -3.1336 20 1 0.7171 -8.5327 -0.9735 21 1 -0.3634 -0.1098 1.0218 22 1 -0.3633 0.9399 -0.4157 23 1 -0.3634 -0.8299 -0.6060 24 1 1.6965 2.1338 0.0004 25 1 4.1555 2.0762 -0.0100 26 1 4.1928 -2.0723 -0.0007 27 1 3.2666 -5.2097 1.1651 28 1 3.3206 -3.5316 1.7571 29 1 1.8067 -4.4626 1.8563 30 1 3.5300 -7.2669 -0.8284 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135506509.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:48 Heat of formation + Delta-G solvation = -12.356182 kcal Electronic energy + Delta-G solvation = -14458.359433 eV Core-core repulsion = 12025.500336 eV Total energy + Delta-G solvation = -2432.859097 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.23049 -38.07337 -34.08445 -33.35950 -31.60231 -30.11784 -27.71642 -25.23252 -24.46517 -22.66675 -21.44234 -18.98445 -16.60403 -16.35854 -15.93324 -15.55390 -14.67783 -14.41404 -14.05592 -13.42447 -13.01093 -12.62341 -12.53176 -12.42801 -12.30373 -11.80773 -11.42499 -11.07071 -10.76277 -10.65813 -10.31200 -10.11421 -9.40391 -9.29678 -9.02756 -8.88816 -8.51540 -8.28169 -6.07898 -4.13261 0.91690 1.42086 3.15061 3.28609 3.36472 3.43128 4.12422 4.38384 4.56693 4.84228 4.93565 4.97392 5.20215 5.25003 5.60215 5.69495 5.84053 5.89489 6.10794 6.22880 6.35580 6.63121 6.73118 6.84128 6.87733 6.95214 7.44306 7.72273 7.95836 8.10702 8.18757 8.55481 8.91113 9.51794 10.98912 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.041841 B = 0.008147 C = 0.007311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.046769 B = 3436.001944 C = 3828.726974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.003 3.997 3 C -0.195 4.195 4 C 0.112 3.888 5 N -0.501 5.501 6 C 0.152 3.848 7 C -0.211 4.211 8 C 0.402 3.598 9 O -0.456 6.456 10 C 0.006 3.994 11 H 0.051 0.949 12 C -0.130 4.130 13 C -0.506 4.506 14 H 0.067 0.933 15 C 0.062 3.938 16 N -0.891 5.891 17 Si 0.897 3.103 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.283 1.283 21 H 0.079 0.921 22 H 0.059 0.941 23 H 0.097 0.903 24 H 0.133 0.867 25 H 0.154 0.846 26 H 0.172 0.828 27 H 0.096 0.904 28 H 0.014 0.986 29 H 0.033 0.967 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.365 11.805 1.590 11.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.005 4.005 3 C -0.215 4.215 4 C -0.043 4.043 5 N -0.210 5.210 6 C -0.005 4.005 7 C -0.214 4.214 8 C 0.280 3.720 9 O -0.331 6.331 10 C -0.013 4.013 11 H 0.069 0.931 12 C -0.188 4.188 13 C -0.545 4.545 14 H 0.085 0.915 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.725 3.275 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.209 1.209 21 H 0.097 0.903 22 H 0.078 0.922 23 H 0.116 0.884 24 H 0.151 0.849 25 H 0.171 0.829 26 H 0.189 0.811 27 H 0.114 0.886 28 H 0.033 0.967 29 H 0.052 0.948 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.025 11.653 1.642 11.768 hybrid contribution -1.237 -0.604 -0.431 1.442 sum -1.212 11.048 1.211 11.180 Atomic orbital electron populations 1.21063 0.89698 1.03207 1.03796 1.20715 0.97303 0.92024 0.90416 1.21975 0.95641 0.98411 1.05491 1.22880 0.91663 0.96458 0.93335 1.67734 1.41033 0.98427 1.13812 1.23413 0.91054 0.96345 0.89719 1.22056 0.96200 0.96723 1.06450 1.23262 0.89144 0.89664 0.69917 1.90315 1.16912 1.89428 1.36467 1.19163 0.96498 0.89566 0.96065 0.93075 1.21695 0.99802 1.02284 0.94985 1.21072 1.00122 0.95634 1.37624 0.91510 1.24932 0.95118 0.98341 0.95579 1.69865 1.14929 1.21121 1.47096 0.86432 0.80664 0.81260 0.79116 1.19640 1.20961 1.20902 0.90296 0.92227 0.88420 0.84881 0.82903 0.81136 0.88559 0.96739 0.94793 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.80 8.84 36.00 0.32 -1.48 16 2 C 0.00 0.05 5.96 -103.83 -0.62 -0.57 16 3 C -0.20 -2.58 9.78 -39.51 -0.39 -2.97 16 4 C 0.11 1.51 11.17 -17.44 -0.19 1.32 16 5 N -0.50 -8.22 10.34 -12.83 -0.13 -8.35 16 6 C 0.15 2.70 10.50 -17.04 -0.18 2.52 16 7 C -0.21 -3.96 5.88 -104.92 -0.62 -4.58 16 8 C 0.40 8.91 6.12 -30.69 -0.19 8.72 16 9 O -0.46 -10.76 13.12 5.58 0.07 -10.68 16 10 C 0.01 0.14 1.97 -92.93 -0.18 -0.04 16 11 H 0.05 1.26 6.75 -51.93 -0.35 0.91 16 12 C -0.13 -3.02 8.95 37.15 0.33 -2.69 16 13 C -0.51 -13.96 8.32 -34.44 -0.29 -14.24 16 14 H 0.07 1.91 7.14 -52.48 -0.37 1.53 16 15 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 16 N -0.89 -24.64 11.31 55.43 0.63 -24.01 16 17 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 22 H 0.06 0.69 8.07 -51.93 -0.42 0.28 16 23 H 0.10 1.69 5.97 -51.93 -0.31 1.38 16 24 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 25 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 26 H 0.17 2.98 6.55 -52.49 -0.34 2.64 16 27 H 0.10 2.43 6.06 -51.93 -0.31 2.12 16 28 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 257.81 15.07 3.89 3.89 Total: -1.00 -29.54 257.81 -6.03 -35.56 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -3.36 Total: -0.29 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -2.10 Total: -12.43 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.49 Total: -32.36 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.07 Total: -10.68 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.54 -6.03 -35.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135506509.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.208 kcal (2) G-P(sol) polarization free energy of solvation -29.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds