Wall clock time and date at job start Mon Mar 30 2020 03:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38328 * 120.87263 * 2 1 4 4 C 1.38355 * 119.33505 * 180.27232 * 3 2 1 5 5 N 1.31981 * 121.13948 * 359.72486 * 4 3 2 6 6 C 1.31618 * 121.91162 * 0.02562 * 5 4 3 7 7 C 1.39840 * 120.52425 * 359.97438 * 6 5 4 8 8 C 1.47164 * 120.58399 * 179.97438 * 7 6 5 9 9 O 1.21252 * 119.99654 * 174.10499 * 8 7 6 10 10 C 1.50696 * 120.00298 * 354.10505 * 8 7 6 11 11 H 1.09002 * 109.47145 * 329.99594 * 10 8 7 12 12 C 1.52995 * 109.47177 * 89.99778 * 10 8 7 13 13 C 1.50706 * 109.47221 * 209.99986 * 10 8 7 14 14 H 1.08003 * 119.99701 * 0.02562 * 13 10 8 15 15 C 1.37871 * 119.99986 * 180.27145 * 13 10 8 16 16 N 1.31512 * 119.99984 * 359.72966 * 15 13 10 17 17 Si 1.86801 * 119.99886 * 179.72215 * 15 13 10 18 18 H 1.48499 * 109.47035 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46734 * 120.00233 * 17 15 13 20 20 H 1.48498 * 109.47095 * 240.00119 * 17 15 13 21 21 H 1.09005 * 109.47201 * 263.86680 * 1 2 3 22 22 H 1.09004 * 109.46722 * 23.86136 * 1 2 3 23 23 H 1.08995 * 109.47312 * 143.86180 * 1 2 3 24 24 H 1.08004 * 120.33259 * 0.02562 * 3 2 1 25 25 H 1.07995 * 119.42841 * 179.73886 * 4 3 2 26 26 H 1.08001 * 119.73507 * 180.02562 * 6 5 4 27 27 H 1.09004 * 109.47067 * 179.97438 * 12 10 8 28 28 H 1.09001 * 109.47267 * 300.00029 * 12 10 8 29 29 H 1.09002 * 109.47122 * 60.00414 * 12 10 8 30 30 H 0.97005 * 120.00301 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1873 0.0000 4 6 3.5998 1.1502 -0.0057 5 7 4.2518 0.0026 -0.0058 6 6 3.6240 -1.1542 -0.0009 7 6 2.2265 -1.2039 0.0051 8 6 1.5233 -2.4967 0.0100 9 8 0.3165 -2.5299 0.1230 10 6 2.3030 -3.7791 -0.1255 11 1 3.1994 -3.5985 -0.7187 12 6 2.7031 -4.2818 1.2631 13 6 1.4492 -4.8164 -0.8085 14 1 0.4428 -4.5712 -1.1143 15 6 1.9511 -6.0797 -1.0384 16 7 3.1767 -6.3781 -0.6664 17 14 0.8901 -7.3677 -1.8780 18 1 -0.4384 -6.7847 -2.1948 19 1 1.5486 -7.8093 -3.1336 20 1 0.7171 -8.5327 -0.9735 21 1 -0.3634 -0.1098 1.0218 22 1 -0.3633 0.9399 -0.4157 23 1 -0.3634 -0.8299 -0.6060 24 1 1.6965 2.1338 0.0004 25 1 4.1555 2.0762 -0.0100 26 1 4.1928 -2.0723 -0.0007 27 1 3.2666 -5.2097 1.1651 28 1 3.3206 -3.5316 1.7571 29 1 1.8067 -4.4626 1.8563 30 1 3.5300 -7.2669 -0.8284 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135506509.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:47 Heat of formation + Delta-G solvation = -30.012917 kcal Electronic energy + Delta-G solvation = -14459.125086 eV Core-core repulsion = 12025.500336 eV Total energy + Delta-G solvation = -2433.624750 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.57547 -39.66973 -35.95867 -34.69998 -33.23110 -31.76853 -28.94914 -27.29947 -25.91291 -24.18872 -22.82087 -20.64538 -18.46180 -17.80163 -17.34121 -16.98199 -16.58234 -15.86618 -15.41381 -15.14747 -14.57737 -14.29834 -13.82963 -13.69998 -13.60030 -13.38741 -13.05234 -12.87067 -12.67625 -12.50582 -12.25540 -12.11178 -11.08048 -10.69893 -10.53152 -10.50292 -10.13275 -9.99503 -8.16842 -6.29527 -0.39703 0.22046 1.38360 1.40447 1.52117 1.60556 2.40252 2.84094 3.10829 3.24060 3.57820 3.74614 3.78941 4.03554 4.44249 4.58281 4.61797 4.67235 4.72667 4.83883 4.90759 4.96066 5.01344 5.15074 5.41403 5.49711 5.66991 5.69350 5.92190 6.18804 6.73378 6.81088 6.94035 7.38191 8.88635 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.041841 B = 0.008147 C = 0.007311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.046769 B = 3436.001944 C = 3828.726974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.005 4.005 3 C -0.178 4.178 4 C 0.122 3.878 5 N -0.516 5.516 6 C 0.146 3.854 7 C -0.239 4.239 8 C 0.404 3.596 9 O -0.482 6.482 10 C 0.000 4.000 11 H 0.043 0.957 12 C -0.118 4.118 13 C -0.532 4.532 14 H 0.047 0.953 15 C 0.021 3.979 16 N -0.909 5.909 17 Si 0.955 3.045 18 H -0.276 1.276 19 H -0.274 1.274 20 H -0.275 1.275 21 H 0.079 0.921 22 H 0.097 0.903 23 H 0.065 0.935 24 H 0.180 0.820 25 H 0.200 0.800 26 H 0.161 0.839 27 H 0.075 0.925 28 H 0.041 0.959 29 H 0.022 0.978 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.242 14.132 1.512 14.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.013 4.013 3 C -0.197 4.197 4 C -0.034 4.034 5 N -0.226 5.226 6 C -0.011 4.011 7 C -0.242 4.242 8 C 0.284 3.716 9 O -0.359 6.359 10 C -0.019 4.019 11 H 0.061 0.939 12 C -0.176 4.176 13 C -0.570 4.570 14 H 0.065 0.935 15 C -0.179 4.179 16 N -0.548 5.548 17 Si 0.781 3.219 18 H -0.201 1.201 19 H -0.199 1.199 20 H -0.201 1.201 21 H 0.097 0.903 22 H 0.116 0.884 23 H 0.084 0.916 24 H 0.197 0.803 25 H 0.217 0.783 26 H 0.178 0.822 27 H 0.094 0.906 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.165 13.979 1.566 14.068 hybrid contribution -1.229 -1.200 -0.405 1.765 sum -1.064 12.780 1.160 12.876 Atomic orbital electron populations 1.21026 0.89042 1.03905 1.03455 1.20994 0.98014 0.92156 0.90110 1.22413 0.95558 0.98879 1.02884 1.23708 0.92380 0.96878 0.90404 1.67791 1.41466 0.98833 1.14518 1.23244 0.90559 0.96960 0.90365 1.21700 0.96593 0.95899 1.10032 1.23100 0.88703 0.90583 0.69205 1.90302 1.17662 1.89945 1.38005 1.19133 0.96076 0.90644 0.96084 0.93911 1.21512 0.99340 1.02071 0.94669 1.21264 0.99815 0.97155 1.38741 0.93495 1.25615 0.96299 0.99928 0.96062 1.69951 1.15821 1.21670 1.47359 0.85545 0.78890 0.78944 0.78546 1.20116 1.19912 1.20082 0.90276 0.88400 0.91598 0.80305 0.78326 0.82234 0.90619 0.93967 0.95855 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.31 8.84 71.23 0.63 -2.68 16 2 C -0.01 -0.15 5.96 -19.35 -0.12 -0.27 16 3 C -0.18 -3.89 9.78 22.32 0.22 -3.67 16 4 C 0.12 2.74 11.17 84.70 0.95 3.68 16 5 N -0.52 -15.80 10.34 -194.51 -2.01 -17.81 16 6 C 0.15 5.13 10.50 85.11 0.89 6.02 16 7 C -0.24 -8.95 5.88 -20.05 -0.12 -9.07 16 8 C 0.40 18.49 6.12 28.03 0.17 18.67 16 9 O -0.48 -23.62 13.12 -2.94 -0.04 -23.66 16 10 C 0.00 -0.02 1.97 -12.29 -0.02 -0.05 16 11 H 0.04 2.21 6.75 -2.39 -0.02 2.19 16 12 C -0.12 -5.66 8.95 71.98 0.64 -5.02 16 13 C -0.53 -30.40 8.32 25.60 0.21 -30.18 16 14 H 0.05 2.80 7.14 -2.91 -0.02 2.78 16 15 C 0.02 1.14 5.30 84.65 0.45 1.59 16 16 N -0.91 -51.14 11.31 21.44 0.24 -50.89 16 17 Si 0.96 44.38 29.54 68.60 2.03 46.40 16 18 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 22 H 0.10 1.93 8.07 -2.38 -0.02 1.91 16 23 H 0.07 2.30 5.97 -2.39 -0.01 2.29 16 24 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 25 H 0.20 2.61 8.06 -2.91 -0.02 2.59 16 26 H 0.16 5.77 6.55 -2.91 -0.02 5.75 16 27 H 0.08 3.94 6.06 -2.39 -0.01 3.92 16 28 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.27 14.10 8.31 -92.70 -0.77 13.33 16 Total: -1.00 -65.63 257.81 5.27 -60.36 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 1.14 Total: 6.58 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: 3.91 Total: -20.97 kcal Atomic # 7 Polarization: -66.94 SS G_CDS: -1.77 Total: -68.71 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.04 Total: -23.66 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -65.63 5.27 -60.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135506509.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.345 kcal (2) G-P(sol) polarization free energy of solvation -65.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds