Wall clock time and date at job start Mon Mar 30 2020 02:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 H 1.09004 * 110.66570 * 54.29748 * 10 9 7 12 12 C 1.54697 * 110.75088 * 177.51493 * 10 9 7 13 13 C 1.51955 * 101.80918 * 143.51601 * 12 10 9 14 14 C 1.37719 * 132.02773 * 164.15330 * 13 12 10 15 15 C 1.38939 * 119.92203 * 181.18064 * 14 13 12 16 16 N 1.39941 * 120.19609 * 179.97438 * 15 14 13 17 17 C 1.38881 * 119.61063 * 0.02562 * 15 14 13 18 18 C 1.37888 * 120.27063 * 359.80853 * 17 15 14 19 19 C 1.38862 * 107.11170 * 344.85991 * 13 12 10 20 20 O 1.36269 * 111.20812 * 358.73448 * 19 13 12 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 23 23 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 24 24 H 1.09003 * 110.93970 * 261.79545 * 12 10 9 25 25 H 1.09000 * 110.93605 * 25.47530 * 12 10 9 26 26 H 1.07997 * 120.03911 * 1.20388 * 14 13 12 27 27 H 0.96998 * 119.99573 * 180.02562 * 16 15 14 28 28 H 0.96997 * 119.99914 * 0.02562 * 16 15 14 29 29 H 1.08003 * 119.86633 * 179.77941 * 17 15 14 30 30 H 1.07997 * 119.83275 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9476 -3.5678 0.8277 12 6 1.5029 -5.0179 0.0622 13 6 2.3729 -5.8903 -0.8271 14 6 2.4536 -7.2562 -0.9837 15 6 3.3758 -7.7989 -1.8699 16 7 3.4630 -9.1861 -2.0331 17 6 4.2114 -6.9568 -2.5920 18 6 4.1249 -5.5897 -2.4345 19 6 3.1984 -5.0404 -1.5514 20 8 2.9437 -3.7350 -1.2549 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5571 0.8897 23 1 0.6240 -2.5568 -0.8903 24 1 1.4765 -5.4007 1.0824 25 1 0.4958 -4.9297 -0.3454 26 1 1.8004 -7.9046 -0.4187 27 1 4.1082 -9.5619 -2.6523 28 1 2.8783 -9.7716 -1.5271 29 1 4.9323 -7.3744 -3.2793 30 1 4.7778 -4.9414 -2.9999 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000144997158.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:18 Heat of formation + Delta-G solvation = -15.934854 kcal Electronic energy + Delta-G solvation = -14095.579578 eV Core-core repulsion = 11662.565298 eV Total energy + Delta-G solvation = -2433.014280 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.42042 -37.62412 -33.71641 -33.07971 -32.08527 -30.05624 -28.03403 -26.53428 -23.45066 -21.79925 -21.09437 -20.46163 -16.94026 -16.80304 -16.58969 -16.22583 -15.12058 -14.68737 -14.00829 -13.71589 -13.13962 -12.88227 -12.65475 -12.28729 -12.12797 -11.88855 -11.47962 -11.18782 -10.78377 -10.58166 -10.53052 -10.27493 -9.61537 -9.14916 -9.06582 -8.55373 -8.35926 -6.86388 -5.98783 -3.99993 1.60581 1.92383 3.37638 3.41054 3.45009 3.87857 4.04727 4.23613 4.49222 4.93827 5.15099 5.36432 5.39053 5.52365 5.61338 5.78313 5.89451 6.16335 6.24104 6.41049 6.46188 6.60890 6.66918 6.84414 6.94501 7.46258 7.57472 7.67496 7.82872 7.97734 8.03794 8.39479 9.03861 9.63152 11.12768 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.065616 B = 0.006043 C = 0.005658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.625305 B = 4632.721250 C = 4947.424106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.288 1.288 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.091 3.909 11 H 0.072 0.928 12 C -0.111 4.111 13 C -0.130 4.130 14 C -0.148 4.148 15 C 0.171 3.829 16 N -0.886 5.886 17 C -0.165 4.165 18 C -0.104 4.104 19 C 0.066 3.934 20 O -0.288 6.288 21 H 0.261 0.739 22 H 0.038 0.962 23 H 0.029 0.971 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.117 0.883 27 H 0.394 0.606 28 H 0.394 0.606 29 H 0.121 0.879 30 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.595 -15.754 -2.383 16.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.213 1.213 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.036 3.964 11 H 0.090 0.910 12 C -0.148 4.148 13 C -0.131 4.131 14 C -0.170 4.170 15 C 0.070 3.930 16 N -0.428 5.428 17 C -0.188 4.188 18 C -0.123 4.123 19 C 0.019 3.981 20 O -0.202 6.202 21 H 0.071 0.929 22 H 0.056 0.944 23 H 0.047 0.953 24 H 0.100 0.900 25 H 0.108 0.892 26 H 0.135 0.865 27 H 0.221 0.779 28 H 0.221 0.779 29 H 0.139 0.861 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.481 -15.329 -2.480 16.467 hybrid contribution 0.350 0.420 0.035 0.548 sum 5.831 -14.909 -2.445 16.194 Atomic orbital electron populations 1.69945 1.06046 1.26815 1.50933 1.24993 0.94856 0.99288 0.95270 0.86602 0.79532 0.82874 0.78693 1.21329 1.20230 1.20167 1.21108 0.93207 0.90522 1.50452 0.92349 1.19300 0.92958 0.90500 0.98469 1.23719 0.93713 0.95448 0.83525 0.91015 1.22065 0.99473 0.94293 0.98964 1.20820 0.98185 0.93479 1.00656 1.19624 1.01642 0.93383 1.02361 1.17471 0.95728 0.84124 0.95710 1.42266 1.45692 1.03193 1.51621 1.20161 1.02637 0.92151 1.03833 1.19972 0.98101 0.94017 1.00234 1.19636 0.95527 0.85183 0.97789 1.87053 1.73633 1.20163 1.39350 0.92905 0.94379 0.95292 0.89972 0.89245 0.86538 0.77869 0.77909 0.86064 0.85780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.51 -14.84 9.00 -34.44 -0.31 -15.15 16 8 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 9 C 0.02 0.64 4.67 -27.89 -0.13 0.51 16 10 C 0.09 2.01 3.52 -25.84 -0.09 1.92 16 11 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 12 C -0.11 -2.00 6.67 -26.37 -0.18 -2.18 16 13 C -0.13 -2.30 6.27 -103.96 -0.65 -2.95 16 14 C -0.15 -2.18 9.89 -39.51 -0.39 -2.57 16 15 C 0.17 2.27 6.77 -83.66 -0.57 1.71 16 16 N -0.89 -8.18 9.10 32.46 0.30 -7.89 16 17 C -0.17 -2.26 9.87 -39.47 -0.39 -2.65 16 18 C -0.10 -1.70 10.06 -39.32 -0.40 -2.09 16 19 C 0.07 1.29 7.03 -38.96 -0.27 1.01 16 20 O -0.29 -6.64 10.70 -20.60 -0.22 -6.86 16 21 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 22 H 0.04 1.00 8.14 -51.92 -0.42 0.58 16 23 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.09 1.61 7.92 -51.93 -0.41 1.20 16 26 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 27 H 0.39 2.82 8.85 -40.82 -0.36 2.46 16 28 H 0.39 2.94 8.85 -40.82 -0.36 2.58 16 29 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 30 H 0.12 1.85 8.06 -52.49 -0.42 1.42 16 LS Contribution 261.57 15.07 3.94 3.94 Total: -1.00 -31.91 261.57 -7.37 -39.28 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -3.63 Total: 1.69 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -3.47 Total: -20.90 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 1.03 Total: -34.20 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.22 Total: -6.86 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.91 -7.37 -39.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144997158.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.346 kcal (2) G-P(sol) polarization free energy of solvation -31.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds