Wall clock time and date at job start Mon Mar 30 2020 02:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 H 1.09004 * 110.66570 * 54.29748 * 10 9 7 12 12 C 1.54697 * 110.75088 * 177.51493 * 10 9 7 13 13 C 1.51955 * 101.80918 * 143.51601 * 12 10 9 14 14 C 1.37719 * 132.02773 * 164.15330 * 13 12 10 15 15 C 1.38939 * 119.92203 * 181.18064 * 14 13 12 16 16 N 1.39941 * 120.19609 * 179.97438 * 15 14 13 17 17 C 1.38881 * 119.61063 * 0.02562 * 15 14 13 18 18 C 1.37888 * 120.27063 * 359.80853 * 17 15 14 19 19 C 1.38862 * 107.11170 * 344.85991 * 13 12 10 20 20 O 1.36269 * 111.20812 * 358.73448 * 19 13 12 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 23 23 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 24 24 H 1.09003 * 110.93970 * 261.79545 * 12 10 9 25 25 H 1.09000 * 110.93605 * 25.47530 * 12 10 9 26 26 H 1.07997 * 120.03911 * 1.20388 * 14 13 12 27 27 H 0.96998 * 119.99573 * 180.02562 * 16 15 14 28 28 H 0.96997 * 119.99914 * 0.02562 * 16 15 14 29 29 H 1.08003 * 119.86633 * 179.77941 * 17 15 14 30 30 H 1.07997 * 119.83275 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9476 -3.5678 0.8277 12 6 1.5029 -5.0179 0.0622 13 6 2.3729 -5.8903 -0.8271 14 6 2.4536 -7.2562 -0.9837 15 6 3.3758 -7.7989 -1.8699 16 7 3.4630 -9.1861 -2.0331 17 6 4.2114 -6.9568 -2.5920 18 6 4.1249 -5.5897 -2.4345 19 6 3.1984 -5.0404 -1.5514 20 8 2.9437 -3.7350 -1.2549 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5571 0.8897 23 1 0.6240 -2.5568 -0.8903 24 1 1.4765 -5.4007 1.0824 25 1 0.4958 -4.9297 -0.3454 26 1 1.8004 -7.9046 -0.4187 27 1 4.1082 -9.5619 -2.6523 28 1 2.8783 -9.7716 -1.5271 29 1 4.9323 -7.3744 -3.2793 30 1 4.7778 -4.9414 -2.9999 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000144997158.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:17 Heat of formation + Delta-G solvation = -37.523555 kcal Electronic energy + Delta-G solvation = -14096.515734 eV Core-core repulsion = 11662.565298 eV Total energy + Delta-G solvation = -2433.950436 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.82321 -38.87731 -35.47360 -34.50121 -33.64419 -31.75044 -29.32775 -28.13087 -25.32797 -23.08596 -22.39213 -22.16764 -18.61245 -18.25304 -17.99664 -17.45019 -16.77243 -16.36927 -15.54339 -15.02631 -14.44169 -14.36657 -13.94676 -13.91171 -13.71160 -13.44219 -13.30396 -12.94699 -12.57201 -12.38390 -12.26207 -11.67237 -11.52999 -11.13464 -10.59528 -10.47872 -9.75686 -8.21452 -8.01894 -6.31166 0.41823 0.68568 1.39371 1.43257 1.51147 2.40979 2.61532 2.91060 3.07412 3.14014 3.63614 3.82852 4.09876 4.18796 4.37219 4.39738 4.63985 4.78085 4.84774 4.94556 5.09624 5.24189 5.36051 5.36991 5.52968 5.67163 5.73415 5.78401 6.17380 6.47895 6.71617 6.80238 7.14036 7.36442 8.90326 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.065616 B = 0.006043 C = 0.005658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.625305 B = 4632.721250 C = 4947.424106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.965 3.035 4 H -0.278 1.278 5 H -0.264 1.264 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.053 0.947 9 C 0.031 3.969 10 C 0.093 3.907 11 H 0.071 0.929 12 C -0.101 4.101 13 C -0.137 4.137 14 C -0.154 4.154 15 C 0.188 3.812 16 N -0.866 5.866 17 C -0.163 4.163 18 C -0.106 4.106 19 C 0.010 3.990 20 O -0.326 6.326 21 H 0.265 0.735 22 H 0.028 0.972 23 H -0.003 1.003 24 H 0.108 0.892 25 H 0.083 0.917 26 H 0.142 0.858 27 H 0.408 0.592 28 H 0.406 0.594 29 H 0.157 0.843 30 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.841 -17.783 -2.696 19.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.790 3.210 4 H -0.203 1.203 5 H -0.189 1.189 6 H -0.198 1.198 7 C -0.576 4.576 8 H 0.071 0.929 9 C -0.006 4.006 10 C 0.037 3.963 11 H 0.089 0.911 12 C -0.138 4.138 13 C -0.138 4.138 14 C -0.177 4.177 15 C 0.083 3.917 16 N -0.408 5.408 17 C -0.186 4.186 18 C -0.126 4.126 19 C -0.036 4.036 20 O -0.242 6.242 21 H 0.074 0.926 22 H 0.046 0.954 23 H 0.015 0.985 24 H 0.126 0.874 25 H 0.101 0.899 26 H 0.160 0.840 27 H 0.238 0.762 28 H 0.236 0.764 29 H 0.174 0.826 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.738 -17.427 -2.799 18.893 hybrid contribution -0.002 0.864 0.058 0.866 sum 6.736 -16.563 -2.742 18.089 Atomic orbital electron populations 1.70063 1.07592 1.27969 1.51506 1.25910 0.95810 1.03155 0.94587 0.85500 0.78333 0.78136 0.79081 1.20338 1.18897 1.19835 1.21469 0.93256 0.92130 1.50757 0.92855 1.19110 0.93330 0.91855 0.96290 1.23428 0.93202 0.95890 0.83767 0.91104 1.21922 0.98683 0.92432 1.00792 1.20835 0.97886 0.94562 1.00551 1.19878 1.02446 0.92343 1.03004 1.17593 0.94185 0.85848 0.94029 1.42250 1.45697 1.01563 1.51310 1.20514 1.03083 0.90948 1.04039 1.20260 0.97412 0.95496 0.99406 1.20019 0.98603 0.84011 1.00954 1.86942 1.74559 1.23013 1.39658 0.92592 0.95428 0.98486 0.87364 0.89899 0.83984 0.76157 0.76431 0.82569 0.85208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.55 13.29 21.45 0.28 -57.26 16 2 C 0.00 0.19 5.46 84.66 0.46 0.66 16 3 Si 0.97 45.87 29.54 68.60 2.03 47.90 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 6 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 7 C -0.54 -32.23 9.00 25.60 0.23 -32.00 16 8 H 0.05 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.03 1.71 4.67 29.85 0.14 1.85 16 10 C 0.09 4.27 3.52 31.17 0.11 4.38 16 11 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 12 C -0.10 -3.72 6.67 30.83 0.21 -3.51 16 13 C -0.14 -4.77 6.27 -19.44 -0.12 -4.89 16 14 C -0.15 -4.14 9.89 22.32 0.22 -3.92 16 15 C 0.19 4.30 6.77 38.17 0.26 4.56 16 16 N -0.87 -11.89 9.10 -51.20 -0.47 -12.36 16 17 C -0.16 -3.96 9.87 22.34 0.22 -3.74 16 18 C -0.11 -3.40 10.06 22.44 0.23 -3.17 16 19 C 0.01 0.41 7.03 22.67 0.16 0.57 16 20 O -0.33 -15.82 10.70 -96.63 -1.03 -16.85 16 21 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 22 H 0.03 1.54 8.14 -2.38 -0.02 1.52 16 23 H 0.00 -0.20 8.14 -2.39 -0.02 -0.21 16 24 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 25 H 0.08 3.09 7.92 -2.39 -0.02 3.08 16 26 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 27 H 0.41 3.76 8.85 -92.71 -0.82 2.94 16 28 H 0.41 4.11 8.85 -92.71 -0.82 3.29 16 29 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 30 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -71.35 261.57 2.44 -68.90 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -0.48 Total: 8.89 kcal Atomic # 6 Polarization: -41.33 SS G_CDS: 2.11 Total: -39.22 kcal Atomic # 7 Polarization: -69.44 SS G_CDS: -0.18 Total: -69.62 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -1.03 Total: -16.85 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -71.35 2.44 -68.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144997158.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.381 kcal (2) G-P(sol) polarization free energy of solvation -71.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds