Wall clock time and date at job start Mon Mar 30 2020 02:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00129 * 2 1 4 4 H 1.48497 * 109.47118 * 240.00023 * 3 2 1 5 5 H 1.48500 * 109.46849 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47162 * 119.99931 * 3 2 1 7 7 C 1.37874 * 120.00370 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00733 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99942 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47576 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.80516 * 303.13519 * 10 9 7 12 12 C 1.54694 * 110.74886 * 179.81998 * 10 9 7 13 13 C 1.51661 * 101.89818 * 216.21317 * 12 10 9 14 14 C 1.37719 * 132.08723 * 195.34933 * 13 12 10 15 15 C 1.38940 * 119.91920 * 179.34360 * 14 13 12 16 16 N 1.39936 * 120.19681 * 180.25269 * 15 14 13 17 17 C 1.38883 * 119.61033 * 0.27745 * 15 14 13 18 18 C 1.37887 * 120.27158 * 0.22141 * 17 15 14 19 19 C 1.38869 * 107.05749 * 15.57913 * 13 12 10 20 20 O 1.36269 * 111.20164 * 0.92054 * 19 13 12 21 21 H 0.97000 * 119.99532 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47228 * 59.99748 * 9 7 2 23 23 H 1.09005 * 109.47117 * 300.00392 * 9 7 2 24 24 H 1.08999 * 110.93552 * 334.55162 * 12 10 9 25 25 H 1.08994 * 110.93579 * 98.19617 * 12 10 9 26 26 H 1.08002 * 120.04503 * 359.62647 * 14 13 12 27 27 H 0.96996 * 119.99808 * 0.02562 * 16 15 14 28 28 H 0.96999 * 119.99946 * 179.97438 * 16 15 14 29 29 H 1.07992 * 119.86611 * 180.20428 * 17 15 14 30 30 H 1.08002 * 119.83154 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2454 -3.6621 -0.0027 11 1 2.9203 -3.5937 -0.8559 12 6 1.5020 -5.0187 0.0006 13 6 2.4038 -5.8673 0.8762 14 6 2.4848 -7.2280 1.0728 15 6 3.4356 -7.7470 1.9429 16 7 3.5265 -9.1290 2.1431 17 6 4.2949 -6.8862 2.6133 18 6 4.2034 -5.5238 2.4211 19 6 3.2503 -4.9984 1.5521 20 8 2.9846 -3.7013 1.2298 21 1 -0.4849 0.8401 0.0004 22 1 0.6248 -2.5563 -0.8919 23 1 0.6241 -2.5575 0.8880 24 1 0.5097 -4.9179 0.4403 25 1 1.4397 -5.4311 -1.0064 26 1 1.8131 -7.8911 0.5479 27 1 2.9249 -9.7277 1.6734 28 1 4.1915 -9.4883 2.7509 29 1 5.0376 -7.2854 3.2880 30 1 4.8750 -4.8609 2.9464 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000144997361.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:21 Heat of formation + Delta-G solvation = -37.341221 kcal Electronic energy + Delta-G solvation = -14102.637085 eV Core-core repulsion = 11668.694555 eV Total energy + Delta-G solvation = -2433.942529 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.83291 -38.87686 -35.46973 -34.50090 -33.65084 -31.75020 -29.33140 -28.12624 -25.33269 -23.08443 -22.38748 -22.16751 -18.59577 -18.26333 -17.99575 -17.44719 -16.77446 -16.37882 -15.53935 -15.02567 -14.44113 -14.36474 -13.94934 -13.91895 -13.70597 -13.42781 -13.31111 -12.94613 -12.57572 -12.38471 -12.25474 -11.67519 -11.52966 -11.13144 -10.59417 -10.47602 -9.75495 -8.21280 -8.01656 -6.30861 0.41789 0.68766 1.39355 1.43222 1.51133 2.41014 2.61886 2.90860 3.07605 3.14204 3.64497 3.82754 4.10050 4.18740 4.37232 4.39999 4.63849 4.78102 4.84802 4.94904 5.09888 5.24309 5.36100 5.36983 5.53442 5.67162 5.73317 5.78653 6.17566 6.48116 6.71714 6.80590 7.14079 7.36747 8.90497 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.064918 B = 0.006076 C = 0.005677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.209227 B = 4607.408803 C = 4930.609035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.053 0.947 9 C 0.031 3.969 10 C 0.093 3.907 11 H 0.071 0.929 12 C -0.102 4.102 13 C -0.137 4.137 14 C -0.154 4.154 15 C 0.188 3.812 16 N -0.866 5.866 17 C -0.163 4.163 18 C -0.107 4.107 19 C 0.010 3.990 20 O -0.326 6.326 21 H 0.265 0.735 22 H 0.027 0.973 23 H -0.003 1.003 24 H 0.083 0.917 25 H 0.107 0.893 26 H 0.142 0.858 27 H 0.406 0.594 28 H 0.408 0.592 29 H 0.157 0.843 30 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.927 -17.700 2.924 19.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.198 1.198 7 C -0.575 4.575 8 H 0.071 0.929 9 C -0.006 4.006 10 C 0.037 3.963 11 H 0.089 0.911 12 C -0.139 4.139 13 C -0.138 4.138 14 C -0.177 4.177 15 C 0.083 3.917 16 N -0.408 5.408 17 C -0.186 4.186 18 C -0.126 4.126 19 C -0.036 4.036 20 O -0.241 6.241 21 H 0.074 0.926 22 H 0.046 0.954 23 H 0.015 0.985 24 H 0.101 0.899 25 H 0.126 0.874 26 H 0.160 0.840 27 H 0.236 0.764 28 H 0.238 0.762 29 H 0.174 0.826 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.827 -17.341 3.020 18.879 hybrid contribution -0.002 0.859 -0.059 0.861 sum 6.825 -16.482 2.960 18.083 Atomic orbital electron populations 1.70062 1.07578 1.27957 1.51552 1.25902 0.95808 1.03138 0.94612 0.85506 0.78336 0.78167 0.79071 1.18919 1.20335 1.19843 1.21454 0.93256 0.92115 1.50688 0.92875 1.19111 0.93298 0.91877 0.96302 1.23428 0.92513 0.95873 0.84448 0.91073 1.21868 0.98430 0.92703 1.00872 1.20773 0.97602 0.94558 1.00904 1.19877 1.02074 0.92585 1.03120 1.17591 0.94071 0.85918 0.94090 1.42248 1.43274 1.01822 1.53479 1.20511 1.02783 0.90850 1.04429 1.20257 0.97130 0.95721 0.99494 1.20028 0.98415 0.84125 1.01010 1.86949 1.72689 1.23333 1.41144 0.92600 0.95444 0.98450 0.89881 0.87420 0.83986 0.76434 0.76159 0.82580 0.85224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.55 13.29 21.45 0.28 -57.27 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.96 45.92 29.54 68.60 2.03 47.94 16 4 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 7 C -0.54 -32.18 8.95 25.60 0.23 -31.95 16 8 H 0.05 3.16 7.74 -2.91 -0.02 3.13 16 9 C 0.03 1.71 4.68 29.85 0.14 1.85 16 10 C 0.09 4.27 3.55 31.17 0.11 4.38 16 11 H 0.07 3.17 8.14 -2.39 -0.02 3.16 16 12 C -0.10 -3.74 6.65 30.73 0.20 -3.53 16 13 C -0.14 -4.77 6.26 -19.53 -0.12 -4.89 16 14 C -0.15 -4.14 9.89 22.32 0.22 -3.92 16 15 C 0.19 4.30 6.77 38.17 0.26 4.56 16 16 N -0.87 -11.91 9.10 -51.20 -0.47 -12.38 16 17 C -0.16 -3.97 9.87 22.34 0.22 -3.75 16 18 C -0.11 -3.41 10.06 22.44 0.23 -3.19 16 19 C 0.01 0.42 7.03 22.67 0.16 0.57 16 20 O -0.33 -15.80 10.65 -96.62 -1.03 -16.83 16 21 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 22 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 24 H 0.08 3.10 7.92 -2.39 -0.02 3.09 16 25 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 26 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 27 H 0.41 4.12 8.85 -92.71 -0.82 3.30 16 28 H 0.41 3.77 8.85 -92.71 -0.82 2.95 16 29 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 30 H 0.13 3.83 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -71.32 261.48 2.44 -68.88 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -0.48 Total: 8.85 kcal Atomic # 6 Polarization: -41.31 SS G_CDS: 2.11 Total: -39.21 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: -0.18 Total: -69.65 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -1.03 Total: -16.83 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -71.32 2.44 -68.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144997361.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.538 kcal (2) G-P(sol) polarization free energy of solvation -71.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds