Wall clock time and date at job start Mon Mar 30 2020 03:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38395 * 119.42790 * 2 1 4 4 C 1.38286 * 119.32909 * 179.72638 * 3 2 1 5 5 C 1.40296 * 118.26615 * 0.53981 * 4 3 2 6 6 C 1.47170 * 120.58913 * 179.75746 * 5 4 3 7 7 O 1.21253 * 119.99697 * 359.72411 * 6 5 4 8 8 C 1.50692 * 119.99752 * 179.72117 * 6 5 4 9 9 H 1.08992 * 109.47630 * 329.99954 * 8 6 5 10 10 C 1.53001 * 109.47032 * 90.00552 * 8 6 5 11 11 C 1.50706 * 109.47006 * 210.00015 * 8 6 5 12 12 H 1.08005 * 119.99533 * 354.49054 * 11 8 6 13 13 C 1.37875 * 120.00053 * 174.48946 * 11 8 6 14 14 N 1.31516 * 119.99839 * 164.57428 * 13 11 8 15 15 Si 1.86798 * 120.00272 * 344.84657 * 13 11 8 16 16 H 1.48503 * 109.47097 * 269.72687 * 15 13 11 17 17 H 1.48502 * 109.46929 * 29.72097 * 15 13 11 18 18 H 1.48492 * 109.47664 * 149.72553 * 15 13 11 19 19 C 1.39803 * 118.82724 * 359.48752 * 5 4 3 20 20 N 1.31649 * 120.52344 * 0.24896 * 19 5 4 21 21 H 1.09003 * 109.46828 * 269.96821 * 1 2 3 22 22 H 1.08996 * 109.47757 * 29.97064 * 1 2 3 23 23 H 1.09002 * 109.47522 * 149.97539 * 1 2 3 24 24 H 1.07994 * 120.33653 * 0.02562 * 3 2 1 25 25 H 1.08005 * 120.86906 * 180.28338 * 4 3 2 26 26 H 1.09002 * 109.47360 * 173.59613 * 10 8 6 27 27 H 1.09001 * 109.46975 * 293.59606 * 10 8 6 28 28 H 1.09003 * 109.47393 * 53.59772 * 10 8 6 29 29 H 0.97001 * 120.00353 * 355.17655 * 14 13 11 30 30 H 1.07999 * 119.73932 * 180.27075 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1870 1.2054 0.0000 4 6 3.5698 1.2030 0.0058 5 6 4.2321 -0.0338 -0.0002 6 6 5.7025 -0.0959 0.0001 7 8 6.3525 0.9277 0.0005 8 6 6.4001 -1.4316 0.0000 9 1 5.7794 -2.1658 0.5135 10 6 6.6367 -1.8833 -1.4426 11 6 7.7232 -1.3074 0.7108 12 1 8.0689 -0.3396 1.0430 13 6 8.4923 -2.4291 0.9369 14 7 9.7575 -2.3022 1.2728 15 14 7.7394 -4.1293 0.7589 16 1 7.1789 -4.5617 2.0644 17 1 6.6555 -4.0869 -0.2553 18 1 8.7848 -5.0910 0.3262 19 6 3.4706 -1.2062 -0.0007 20 7 2.1554 -1.1492 -0.0006 21 1 -0.3633 -0.0006 1.0277 22 1 -0.3634 0.8902 -0.5133 23 1 -0.3634 -0.8898 -0.5142 24 1 1.6431 2.1384 0.0004 25 1 4.1255 2.1291 0.0105 26 1 7.2401 -2.7911 -1.4448 27 1 5.6786 -2.0827 -1.9226 28 1 7.1599 -1.0979 -1.9881 29 1 10.1681 -1.4236 1.2933 30 1 3.9652 -2.1663 -0.0009 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162316288.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:16 Heat of formation + Delta-G solvation = -36.281596 kcal Electronic energy + Delta-G solvation = -14257.194379 eV Core-core repulsion = 11823.297798 eV Total energy + Delta-G solvation = -2433.896581 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.57370 -39.91741 -35.96219 -34.21181 -33.49675 -32.97754 -29.15847 -26.89556 -25.20256 -24.71440 -22.87575 -20.64187 -19.58777 -18.07932 -17.53646 -16.66432 -16.26123 -15.84817 -15.38835 -15.14786 -15.00693 -14.32975 -14.22702 -13.95450 -13.52071 -13.25801 -13.15857 -12.97729 -12.94105 -12.42378 -12.08346 -11.40511 -11.02499 -10.96178 -10.76421 -10.55700 -10.33193 -9.98861 -8.79379 -6.42697 -0.51438 0.17997 1.45900 1.51520 1.58143 1.74441 2.53638 2.75654 2.99795 3.08350 3.37689 3.70421 3.84979 3.93222 4.30921 4.37681 4.41706 4.67046 4.69230 4.71333 4.80895 4.83628 5.01455 5.10282 5.18095 5.22163 5.43840 5.62881 5.84474 6.00214 6.50440 6.66147 6.86019 7.37202 8.58648 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.041971 B = 0.008008 C = 0.007132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.964476 B = 3495.646472 C = 3924.957256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.143 3.857 3 C -0.175 4.175 4 C -0.033 4.033 5 C -0.241 4.241 6 C 0.412 3.588 7 O -0.501 6.501 8 C -0.029 4.029 9 H 0.072 0.928 10 C -0.133 4.133 11 C -0.603 4.603 12 H 0.010 0.990 13 C -0.020 4.020 14 N -0.937 5.937 15 Si 1.081 2.919 16 H -0.270 1.270 17 H -0.217 1.217 18 H -0.287 1.287 19 C 0.152 3.848 20 N -0.507 5.507 21 H 0.095 0.905 22 H 0.103 0.897 23 H 0.080 0.920 24 H 0.178 0.822 25 H 0.139 0.861 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.031 0.969 29 H 0.249 0.751 30 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.177 1.858 -4.571 21.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.006 3.994 3 C -0.194 4.194 4 C -0.059 4.059 5 C -0.244 4.244 6 C 0.292 3.708 7 O -0.379 6.379 8 C -0.049 4.049 9 H 0.090 0.910 10 C -0.190 4.190 11 C -0.640 4.640 12 H 0.028 0.972 13 C -0.217 4.217 14 N -0.572 5.572 15 Si 0.899 3.101 16 H -0.195 1.195 17 H -0.140 1.140 18 H -0.213 1.213 19 C -0.005 4.005 20 N -0.217 5.217 21 H 0.113 0.887 22 H 0.122 0.878 23 H 0.099 0.901 24 H 0.195 0.805 25 H 0.157 0.843 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -21.004 0.050 -4.403 21.461 hybrid contribution 1.451 2.941 0.211 3.286 sum -19.554 2.991 -4.193 20.221 Atomic orbital electron populations 1.20910 0.85422 1.05087 1.04570 1.22330 0.99250 0.87955 0.89828 1.22283 0.93215 1.01047 1.02857 1.22056 0.95631 0.97442 0.90742 1.21695 0.95692 0.96847 1.10207 1.23004 0.87914 0.91546 0.68370 1.90366 1.69800 1.39146 1.38579 1.19563 0.95904 0.92944 0.96473 0.91048 1.21988 1.01334 1.00799 0.94907 1.22022 1.05218 0.94842 1.41938 0.97179 1.27520 0.93954 1.08251 0.92002 1.70942 1.12667 1.25876 1.47716 0.83750 0.76917 0.69970 0.79429 1.19530 1.13978 1.21255 1.23387 0.89213 0.98114 0.89835 1.67691 1.09209 1.30183 1.14650 0.88656 0.87800 0.90093 0.80504 0.84312 0.91947 0.90850 0.94954 0.94235 0.80657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.28 10.16 71.24 0.72 -0.56 16 2 C 0.14 3.12 6.78 42.58 0.29 3.41 16 3 C -0.17 -3.70 9.72 22.32 0.22 -3.49 16 4 C -0.03 -0.97 9.72 22.78 0.22 -0.75 16 5 C -0.24 -8.44 5.89 -20.05 -0.12 -8.55 16 6 C 0.41 18.47 6.17 28.03 0.17 18.64 16 7 O -0.50 -26.26 15.99 -2.94 -0.05 -26.31 16 8 C -0.03 -1.36 1.64 -12.29 -0.02 -1.38 16 9 H 0.07 2.94 5.13 -2.39 -0.01 2.92 16 10 C -0.13 -5.41 8.46 71.98 0.61 -4.80 16 11 C -0.60 -35.68 8.64 25.60 0.22 -35.46 16 12 H 0.01 0.68 7.33 -2.91 -0.02 0.66 16 13 C -0.02 -1.18 5.33 84.65 0.45 -0.73 16 14 N -0.94 -60.27 13.70 21.45 0.29 -59.98 16 15 Si 1.08 47.33 26.17 68.60 1.80 49.12 16 16 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 17 H -0.22 -7.68 5.53 99.48 0.55 -7.13 16 18 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 19 C 0.15 4.65 10.54 85.10 0.90 5.55 16 20 N -0.51 -13.95 10.25 -182.58 -1.87 -15.82 16 21 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.10 0.74 8.07 -2.39 -0.02 0.72 16 23 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 25 H 0.14 4.05 7.74 -2.91 -0.02 4.02 16 26 H 0.06 2.52 5.06 -2.39 -0.01 2.51 16 27 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.03 1.38 8.14 -2.39 -0.02 1.37 16 29 H 0.25 16.57 8.73 -92.71 -0.81 15.76 16 30 H 0.18 4.93 6.38 -2.91 -0.02 4.92 16 Total: -1.00 -76.04 257.94 4.78 -71.26 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.95 Total: 9.84 kcal Atomic # 6 Polarization: -31.78 SS G_CDS: 3.66 Total: -28.12 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -1.58 Total: -75.80 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.05 Total: -26.31 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 1.80 Total: 49.12 kcal Total: -76.04 4.78 -71.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162316288.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.977 kcal (2) G-P(sol) polarization free energy of solvation -76.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds