Wall clock time and date at job start Mon Mar 30 2020 03:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99962 * 2 1 4 4 H 1.48501 * 109.46939 * 269.99818 * 3 2 1 5 5 H 1.48504 * 109.46955 * 29.99952 * 3 2 1 6 6 H 1.48501 * 109.47029 * 150.00039 * 3 2 1 7 7 C 1.37874 * 119.99672 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99739 * 186.68595 * 7 2 1 9 9 C 1.50699 * 120.00443 * 6.69191 * 7 2 1 10 10 C 1.52993 * 115.55083 * 278.90041 * 9 7 2 11 11 O 1.42907 * 109.47113 * 320.80708 * 10 9 7 12 12 C 1.35908 * 116.99626 * 180.02562 * 11 10 9 13 13 C 1.39144 * 120.46630 * 180.02562 * 12 11 10 14 14 C 1.38540 * 118.36850 * 180.02562 * 13 12 11 15 15 C 1.38246 * 119.22506 * 359.97438 * 14 13 12 16 16 N 1.31850 * 120.88621 * 0.02562 * 15 14 13 17 17 C 1.31838 * 121.78003 * 359.69471 * 16 15 14 18 18 C 1.53000 * 117.49665 * 64.56864 * 9 7 2 19 19 C 1.52998 * 60.03498 * 107.47615 * 18 9 7 20 20 H 0.96998 * 119.99718 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47273 * 80.80656 * 10 9 7 22 22 H 1.08999 * 109.47472 * 200.80530 * 10 9 7 23 23 H 1.07999 * 120.81481 * 359.97137 * 13 12 11 24 24 H 1.08005 * 120.38298 * 180.02562 * 14 13 12 25 25 H 1.08003 * 119.56099 * 179.97438 * 15 14 13 26 26 H 1.08000 * 119.66004 * 180.29080 * 17 16 15 27 27 H 1.08997 * 117.49888 * 214.97912 * 18 9 7 28 28 H 1.09009 * 117.50034 * 359.97438 * 18 9 7 29 29 H 1.09006 * 117.49593 * 107.49548 * 19 18 9 30 30 H 1.08991 * 117.50200 * 252.52183 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0790 -1.1972 0.1094 9 6 1.2587 -2.4948 -0.1510 10 6 0.6102 -3.0361 1.1246 11 8 1.4822 -2.8118 2.2344 12 6 1.0532 -3.2371 3.4519 13 6 1.8444 -3.0550 4.5819 14 6 1.3647 -3.5057 5.8009 15 6 0.1255 -4.1163 5.8547 16 7 -0.5994 -4.2734 4.7646 17 6 -0.1818 -3.8539 3.5866 18 6 0.5299 -2.7413 -1.4734 19 6 1.8108 -3.5135 -1.1514 20 1 -0.4850 0.8401 0.0004 21 1 -0.3362 -2.5235 1.2968 22 1 0.4295 -4.1053 1.0149 23 1 2.8091 -2.5748 4.5103 24 1 1.9517 -3.3808 6.6989 25 1 -0.2535 -4.4701 6.8021 26 1 -0.8058 -3.9962 2.7166 27 1 -0.4115 -3.2894 -1.4347 28 1 0.5894 -1.9624 -2.2337 29 1 1.7121 -4.5697 -0.9007 30 1 2.7131 -3.2425 -1.6994 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163017178.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:44 Heat of formation + Delta-G solvation = 3.819315 kcal Electronic energy + Delta-G solvation = -14359.595735 eV Core-core repulsion = 11927.438061 eV Total energy + Delta-G solvation = -2432.157675 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.42412 -39.31063 -37.67438 -34.02397 -33.26214 -31.18639 -28.46420 -27.35627 -24.48607 -23.71814 -22.96040 -21.13338 -19.11697 -18.33900 -17.42092 -17.22492 -16.84365 -16.38473 -15.66713 -15.28992 -14.83487 -14.38707 -14.16906 -13.82996 -13.41604 -13.10938 -12.93858 -12.84843 -12.47335 -12.33157 -11.95483 -11.50559 -10.87709 -10.62101 -10.50765 -10.37785 -10.01558 -9.30463 -8.13449 -6.21275 0.19558 0.38728 1.39387 1.40874 1.50150 2.35160 2.44762 2.88203 3.16935 3.41911 3.58891 3.80586 4.01072 4.12834 4.24605 4.35793 4.44940 4.54084 4.64078 4.70589 4.88466 4.96736 5.13728 5.17380 5.17754 5.44907 5.57443 5.69531 5.75769 6.31906 6.57722 6.81838 7.00562 7.45760 8.95866 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.028961 B = 0.008916 C = 0.007637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.583345 B = 3139.694513 C = 3665.568671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.026 3.974 3 Si 0.947 3.053 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.495 4.495 8 H 0.048 0.952 9 C 0.003 3.997 10 C 0.117 3.883 11 O -0.303 6.303 12 C 0.067 3.933 13 C -0.131 4.131 14 C -0.116 4.116 15 C 0.041 3.959 16 N -0.474 5.474 17 C -0.009 4.009 18 C -0.153 4.153 19 C -0.184 4.184 20 H 0.259 0.741 21 H 0.042 0.958 22 H 0.055 0.945 23 H 0.148 0.852 24 H 0.182 0.818 25 H 0.191 0.809 26 H 0.151 0.849 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.908 -6.548 8.372 10.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.174 4.174 3 Si 0.773 3.227 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.533 4.533 8 H 0.067 0.933 9 C 0.002 3.998 10 C 0.042 3.958 11 O -0.214 6.214 12 C 0.019 3.981 13 C -0.157 4.157 14 C -0.135 4.135 15 C -0.117 4.117 16 N -0.184 5.184 17 C -0.165 4.165 18 C -0.190 4.190 19 C -0.221 4.221 20 H 0.068 0.932 21 H 0.061 0.939 22 H 0.073 0.927 23 H 0.166 0.834 24 H 0.199 0.801 25 H 0.208 0.792 26 H 0.168 0.832 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.129 -6.724 8.324 10.759 hybrid contribution 0.772 1.448 -0.500 1.716 sum 1.901 -5.275 7.823 9.625 Atomic orbital electron populations 1.70078 1.06914 1.27039 1.50567 1.25610 0.95580 1.01785 0.94450 0.85728 0.78849 0.79877 0.78258 1.19923 1.21180 1.19552 1.20508 0.92663 0.89986 1.50100 0.93336 1.18902 0.99776 0.94736 0.86349 1.22240 0.91775 0.97050 0.84751 1.86231 1.45687 1.75820 1.13662 1.20660 0.94888 0.94872 0.87725 1.21321 1.01352 1.02434 0.90616 1.22393 0.97049 0.96154 0.97939 1.23257 0.92313 0.98826 0.97337 1.67491 1.35427 1.16491 0.98982 1.22885 0.94773 1.01827 0.97062 1.22528 0.94677 1.01590 1.00233 1.23123 0.97224 0.96417 1.05311 0.93203 0.93940 0.92677 0.83404 0.80081 0.79238 0.83222 0.89920 0.91520 0.88663 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.78 13.11 21.45 0.28 -51.50 16 2 C 0.03 1.42 5.41 84.65 0.46 1.88 16 3 Si 0.95 43.88 29.54 68.60 2.03 45.91 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.49 -27.23 8.20 25.60 0.21 -27.02 16 8 H 0.05 2.71 7.82 -2.91 -0.02 2.69 16 9 C 0.00 0.14 1.71 -52.90 -0.09 0.04 16 10 C 0.12 5.29 4.83 71.98 0.35 5.64 16 11 O -0.30 -13.90 9.52 -92.52 -0.88 -14.78 16 12 C 0.07 2.61 6.71 22.60 0.15 2.77 16 13 C -0.13 -4.10 10.13 22.56 0.23 -3.87 16 14 C -0.12 -2.73 10.11 22.34 0.23 -2.51 16 15 C 0.04 1.04 11.18 84.69 0.95 1.99 16 16 N -0.47 -15.79 10.36 -195.45 -2.02 -17.81 16 17 C -0.01 -0.33 10.22 84.80 0.87 0.54 16 18 C -0.15 -6.85 9.70 30.59 0.30 -6.55 16 19 C -0.18 -7.58 9.89 30.62 0.30 -7.28 16 20 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 21 H 0.04 2.08 7.67 -2.39 -0.02 2.07 16 22 H 0.06 2.17 7.49 -2.39 -0.02 2.15 16 23 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 24 H 0.18 2.54 8.06 -2.91 -0.02 2.52 16 25 H 0.19 3.20 8.06 -2.91 -0.02 3.17 16 26 H 0.15 5.47 6.32 -2.91 -0.02 5.45 16 27 H 0.08 3.36 8.14 -2.39 -0.02 3.35 16 28 H 0.07 3.21 8.14 -2.38 -0.02 3.19 16 29 H 0.10 3.38 8.08 -2.38 -0.02 3.36 16 30 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -63.70 266.22 4.47 -59.23 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 1.13 Total: 13.33 kcal Atomic # 6 Polarization: -38.31 SS G_CDS: 3.94 Total: -34.37 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: -1.74 Total: -69.31 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.88 Total: -14.78 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -63.70 4.47 -59.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163017178.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.047 kcal (2) G-P(sol) polarization free energy of solvation -63.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds