Wall clock time and date at job start Mon Mar 30 2020 02:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31600 * 1 3 3 Si 1.86801 * 120.00080 * 2 1 4 4 H 1.48493 * 109.47280 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46935 * 300.00720 * 3 2 1 6 6 H 1.48502 * 109.47123 * 60.00165 * 3 2 1 7 7 C 1.38787 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00099 * 192.16885 * 7 2 1 9 9 N 1.36851 * 120.00432 * 12.16421 * 7 2 1 10 10 C 1.46921 * 120.52322 * 27.55093 * 9 7 2 11 11 C 1.53428 * 107.81425 * 135.18722 * 10 9 7 12 12 C 1.52854 * 108.85129 * 63.14293 * 11 10 9 13 13 H 1.09001 * 109.30269 * 69.09415 * 12 11 10 14 14 O 1.42902 * 109.30055 * 188.47547 * 12 11 10 15 15 C 1.50586 * 110.47133 * 308.78758 * 12 11 10 16 16 C 1.38442 * 118.95464 * 200.45343 * 15 12 11 17 17 C 1.38172 * 120.31597 * 180.41885 * 16 15 12 18 18 C 1.38352 * 120.19398 * 0.23579 * 17 16 15 19 19 C 1.37973 * 119.92692 * 359.40873 * 18 17 16 20 20 C 1.38771 * 121.48798 * 20.69045 * 15 12 11 21 21 H 0.96997 * 120.00195 * 4.96795 * 1 2 3 22 22 H 1.09005 * 109.78850 * 254.76506 * 10 9 7 23 23 H 1.09001 * 109.78722 * 15.54908 * 10 9 7 24 24 H 1.08999 * 109.56976 * 182.95667 * 11 10 9 25 25 H 1.09002 * 109.56985 * 303.20666 * 11 10 9 26 26 H 0.96701 * 113.99638 * 181.01728 * 14 12 11 27 27 H 1.08000 * 119.84072 * 0.43746 * 16 15 12 28 28 H 1.08004 * 119.90680 * 179.97438 * 17 16 15 29 29 H 1.08002 * 120.04010 * 179.64159 * 18 17 16 30 30 H 1.07995 * 119.99738 * 180.28459 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 3.7100 1.3464 -0.0006 5 1 1.8911 2.3965 -1.2124 6 1 1.8913 2.3964 1.2125 7 6 2.0099 -1.2019 -0.0005 8 1 3.0717 -1.2126 0.1966 9 7 1.3488 -2.3737 -0.2508 10 6 0.1342 -2.3834 -1.0774 11 6 0.2445 -3.5567 -2.0599 12 6 0.2849 -4.8628 -1.2669 13 1 -0.6886 -5.0362 -0.8083 14 8 0.5849 -5.9438 -2.1521 15 6 1.3366 -4.7935 -0.1913 16 6 1.8274 -5.9725 0.3432 17 6 2.7864 -5.9416 1.3374 18 6 3.2601 -4.7306 1.8098 19 6 2.7826 -3.5501 1.2785 20 6 1.8171 -3.5781 0.2754 21 1 -0.4850 0.8368 -0.0727 22 1 -0.7427 -2.5141 -0.4433 23 1 0.0551 -1.4460 -1.6280 24 1 -0.6199 -3.5592 -2.7240 25 1 1.1566 -3.4560 -2.6481 26 1 0.6120 -6.8090 -1.7212 27 1 1.4591 -6.9210 -0.0190 28 1 3.1644 -6.8654 1.7499 29 1 4.0055 -4.7092 2.5910 30 1 3.1549 -2.6043 1.6432 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163074009.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:46 Heat of formation + Delta-G solvation = -34.124751 kcal Electronic energy + Delta-G solvation = -14901.612899 eV Core-core repulsion = 12467.809846 eV Total energy + Delta-G solvation = -2433.803053 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.99543 -37.72894 -37.52349 -34.32795 -32.80204 -31.02128 -30.10831 -27.20611 -24.93902 -23.89743 -22.66476 -20.47654 -19.14693 -18.74268 -17.38596 -16.83361 -16.56872 -16.14814 -15.25226 -15.01277 -14.62733 -14.56859 -14.05884 -13.53110 -13.49224 -13.00668 -12.88975 -12.65883 -12.47314 -12.25690 -12.13533 -11.73892 -11.56306 -11.08893 -10.77918 -10.39959 -9.45208 -8.51583 -8.15883 -5.77553 0.73576 0.97207 1.40271 1.43499 1.52957 2.26261 2.90636 3.12892 3.18292 3.57192 3.95878 4.01974 4.22091 4.33092 4.45458 4.60766 4.73882 4.78481 4.95024 5.02510 5.11031 5.24844 5.36516 5.39443 5.43237 5.74565 5.86763 5.96377 6.07776 6.46040 6.75643 6.89356 7.42271 7.77467 8.73023 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.032695 B = 0.010885 C = 0.008595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.197711 B = 2571.742324 C = 3257.046013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.018 4.018 3 Si 0.988 3.012 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.280 1.280 7 C -0.317 4.317 8 H 0.082 0.918 9 N -0.481 5.481 10 C 0.160 3.840 11 C -0.127 4.127 12 C 0.171 3.829 13 H 0.062 0.938 14 O -0.570 6.570 15 C -0.249 4.249 16 C -0.062 4.062 17 C -0.223 4.223 18 C -0.072 4.072 19 C -0.233 4.233 20 C 0.195 3.805 21 H 0.269 0.731 22 H 0.034 0.966 23 H 0.075 0.925 24 H 0.091 0.909 25 H 0.052 0.948 26 H 0.389 0.611 27 H 0.143 0.857 28 H 0.138 0.862 29 H 0.132 0.868 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.275 -8.172 -0.509 8.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.218 4.218 3 Si 0.812 3.188 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.206 1.206 7 C -0.445 4.445 8 H 0.100 0.900 9 N -0.172 5.172 10 C 0.037 3.963 11 C -0.166 4.166 12 C 0.113 3.887 13 H 0.079 0.921 14 O -0.378 6.378 15 C -0.255 4.255 16 C -0.081 4.081 17 C -0.244 4.244 18 C -0.091 4.091 19 C -0.257 4.257 20 C 0.082 3.918 21 H 0.079 0.921 22 H 0.052 0.948 23 H 0.094 0.906 24 H 0.110 0.890 25 H 0.071 0.929 26 H 0.239 0.761 27 H 0.160 0.840 28 H 0.156 0.844 29 H 0.149 0.851 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.029 -7.256 -1.002 7.397 hybrid contribution 0.227 0.823 0.548 1.015 sum 1.257 -6.433 -0.454 6.570 Atomic orbital electron populations 1.70149 1.06954 1.28493 1.49057 1.26135 0.96333 1.02496 0.96843 0.84937 0.78512 0.77519 0.77843 1.18893 1.19994 1.20607 1.19712 0.92843 0.84255 1.47736 0.89983 1.42813 1.25340 1.03401 1.45668 1.21154 0.86622 0.97069 0.91504 1.21868 1.02604 0.93883 0.98215 1.20116 0.94235 0.86965 0.87402 0.92078 1.86469 1.94363 1.18493 1.38507 1.19997 1.07565 0.92568 1.05414 1.20859 0.95668 0.96389 0.95140 1.20853 1.03175 0.97644 1.02757 1.21053 0.97990 0.91935 0.98142 1.20747 1.04773 0.98647 1.01542 1.18289 0.94890 0.86613 0.92031 0.92134 0.94798 0.90637 0.89030 0.92875 0.76081 0.83979 0.84398 0.85057 0.88268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.67 11.03 21.65 0.24 -49.43 16 2 C -0.02 -0.95 5.03 84.86 0.43 -0.52 16 3 Si 0.99 41.98 29.57 68.60 2.03 44.00 16 4 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 5 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 6 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.32 -17.29 8.63 84.04 0.73 -16.57 16 8 H 0.08 4.46 6.91 -2.91 -0.02 4.44 16 9 N -0.48 -25.15 2.98 -509.98 -1.52 -26.67 16 10 C 0.16 7.72 4.95 86.44 0.43 8.15 16 11 C -0.13 -5.13 5.75 30.69 0.18 -4.95 16 12 C 0.17 6.31 3.57 29.76 0.11 6.41 16 13 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 14 O -0.57 -18.13 13.13 -148.98 -1.96 -20.09 16 15 C -0.25 -10.16 5.61 -19.72 -0.11 -10.27 16 16 C -0.06 -2.07 9.27 22.30 0.21 -1.87 16 17 C -0.22 -7.28 10.04 22.28 0.22 -7.06 16 18 C -0.07 -2.66 10.04 22.23 0.22 -2.44 16 19 C -0.23 -10.59 9.19 22.45 0.21 -10.39 16 20 C 0.19 9.36 6.32 38.29 0.24 9.60 16 21 H 0.27 13.85 8.32 -92.71 -0.77 13.08 16 22 H 0.03 1.70 8.14 -2.38 -0.02 1.68 16 23 H 0.08 3.89 6.41 -2.39 -0.02 3.88 16 24 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 25 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.39 8.59 7.39 -74.06 -0.55 8.04 16 27 H 0.14 3.46 6.62 -2.91 -0.02 3.44 16 28 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 29 H 0.13 3.98 8.06 -2.91 -0.02 3.95 16 30 H 0.10 4.74 6.61 -2.91 -0.02 4.72 16 Total: -1.00 -62.01 247.40 2.25 -59.76 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 0.60 Total: 22.32 kcal Atomic # 6 Polarization: -32.75 SS G_CDS: 2.86 Total: -29.89 kcal Atomic # 7 Polarization: -74.82 SS G_CDS: -1.28 Total: -76.10 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -1.96 Total: -20.09 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.00 kcal Total: -62.01 2.25 -59.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163074009.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.637 kcal (2) G-P(sol) polarization free energy of solvation -62.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds