Wall clock time and date at job start Mon Mar 30 2020 02:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31589 * 1 3 3 Si 1.86801 * 119.99854 * 2 1 4 4 H 1.48503 * 109.47239 * 240.00050 * 3 2 1 5 5 H 1.48493 * 109.47546 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46884 * 120.00696 * 3 2 1 7 7 C 1.38793 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00179 * 165.07647 * 7 2 1 9 9 N 1.36858 * 119.99726 * 345.06539 * 7 2 1 10 10 C 1.46909 * 120.52582 * 333.22286 * 9 7 2 11 11 C 1.53425 * 107.81200 * 224.80550 * 10 9 7 12 12 C 1.52861 * 108.84497 * 296.82639 * 11 10 9 13 13 H 1.08990 * 109.13842 * 291.00483 * 12 11 10 14 14 O 1.42893 * 109.30319 * 171.50868 * 12 11 10 15 15 C 1.50595 * 110.46335 * 51.20393 * 12 11 10 16 16 C 1.38450 * 118.94787 * 159.52306 * 15 12 11 17 17 C 1.38174 * 120.31404 * 179.52766 * 16 15 12 18 18 C 1.38355 * 120.19071 * 0.50366 * 17 16 15 19 19 C 1.37971 * 119.92838 * 359.57175 * 18 17 16 20 20 C 1.38773 * 121.49640 * 339.42948 * 15 12 11 21 21 H 0.97002 * 119.99918 * 5.20487 * 1 2 3 22 22 H 1.09003 * 109.79258 * 105.22929 * 10 9 7 23 23 H 1.09005 * 109.79359 * 344.38725 * 10 9 7 24 24 H 1.08999 * 109.57680 * 177.01745 * 11 10 9 25 25 H 1.08999 * 109.67834 * 56.70115 * 11 10 9 26 26 H 0.96704 * 113.99751 * 178.98724 * 14 12 11 27 27 H 1.07999 * 119.83858 * 359.75266 * 16 15 12 28 28 H 1.07993 * 119.90593 * 180.26232 * 17 16 15 29 29 H 1.08001 * 120.03596 * 179.83990 * 18 17 16 30 30 H 1.07999 * 119.99123 * 180.21706 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6178 0.0000 4 1 3.1036 1.6965 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1037 1.6963 1.2125 7 6 2.0099 -1.2020 -0.0005 8 1 3.0625 -1.2176 -0.2414 9 7 1.3602 -2.3673 0.3044 10 6 0.1714 -2.3551 1.1674 11 6 0.3149 -3.4984 2.1803 12 6 0.3346 -4.8274 1.4253 13 1 -0.6525 -5.0125 1.0020 14 8 0.6649 -5.8811 2.3322 15 6 1.3525 -4.7878 0.3161 16 6 1.8303 -5.9812 -0.1979 17 6 2.7574 -5.9778 -1.2224 18 6 3.2231 -4.7803 -1.7355 19 6 2.7541 -3.5857 -1.2289 20 6 1.8168 -3.5858 -0.1992 21 1 -0.4850 0.8366 -0.0762 22 1 -0.7240 -2.5064 0.5644 23 1 0.1066 -1.4023 1.6929 24 1 -0.5286 -3.4830 2.8705 25 1 1.2446 -3.3809 2.7372 26 1 0.6812 -6.7587 1.9263 27 1 1.4740 -6.9193 0.2015 28 1 3.1225 -6.9127 -1.6213 29 1 3.9497 -4.7805 -2.5345 30 1 3.1143 -2.6503 -1.6310 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163074125.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:50 Heat of formation + Delta-G solvation = -15.849141 kcal Electronic energy + Delta-G solvation = -14899.317630 eV Core-core repulsion = 12466.307068 eV Total energy + Delta-G solvation = -2433.010563 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.35435 -36.22129 -35.83223 -32.56772 -31.12487 -29.39153 -28.43899 -25.38281 -23.25759 -22.26772 -20.97694 -18.84574 -17.41775 -17.13668 -15.72166 -15.21577 -14.85510 -14.48878 -13.60059 -13.41992 -12.98962 -12.85985 -12.45613 -11.89218 -11.77494 -11.28869 -11.25572 -10.94361 -10.83923 -10.60611 -10.48335 -10.13666 -9.94337 -9.27485 -9.24608 -8.61042 -7.85476 -6.62100 -6.41176 -3.80556 2.35690 2.60561 3.14428 3.16198 3.18534 4.01676 4.60276 4.78681 4.89805 5.15750 5.51828 5.60946 5.77190 5.82368 5.97870 6.19858 6.29441 6.41241 6.50884 6.66222 6.83835 6.92567 7.06143 7.14863 7.32924 7.38569 7.49790 7.58442 7.84097 8.09504 8.13003 8.60460 9.23799 9.61108 10.59649 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.032694 B = 0.010868 C = 0.008609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.211498 B = 2575.708060 C = 3251.487972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.028 3.972 3 Si 0.926 3.074 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.304 4.304 8 H 0.093 0.907 9 N -0.449 5.449 10 C 0.150 3.850 11 C -0.135 4.135 12 C 0.165 3.835 13 H 0.048 0.952 14 O -0.568 6.568 15 C -0.238 4.238 16 C -0.061 4.061 17 C -0.239 4.239 18 C -0.071 4.071 19 C -0.206 4.206 20 C 0.224 3.776 21 H 0.271 0.729 22 H 0.053 0.947 23 H 0.096 0.904 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.368 0.632 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.673 -5.684 0.743 5.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.176 4.176 3 Si 0.752 3.248 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.432 4.432 8 H 0.110 0.890 9 N -0.135 5.135 10 C 0.026 3.974 11 C -0.174 4.174 12 C 0.107 3.893 13 H 0.065 0.935 14 O -0.374 6.374 15 C -0.245 4.245 16 C -0.080 4.080 17 C -0.261 4.261 18 C -0.090 4.090 19 C -0.229 4.229 20 C 0.107 3.893 21 H 0.082 0.918 22 H 0.071 0.929 23 H 0.115 0.885 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.215 0.785 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.120 0.880 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.405 -4.674 1.364 4.886 hybrid contribution 0.342 0.352 -0.591 0.768 sum 0.747 -4.322 0.773 4.453 Atomic orbital electron populations 1.69969 1.05919 1.28169 1.47205 1.25381 0.95581 0.99828 0.96807 0.85996 0.79011 0.80642 0.79140 1.19761 1.20800 1.19801 1.19494 0.94016 0.83029 1.46633 0.88976 1.42740 1.26021 1.02666 1.42110 1.21397 0.88063 0.97176 0.90769 1.21979 1.02521 0.94082 0.98814 1.20273 0.94238 0.87394 0.87389 0.93451 1.86497 1.93678 1.17972 1.39210 1.19553 1.07949 0.92641 1.04366 1.20324 0.96535 0.95400 0.95765 1.20288 1.05479 0.96756 1.03535 1.20668 0.97822 0.92536 0.98023 1.20620 1.04262 0.97778 1.00274 1.17751 0.94439 0.85680 0.91383 0.91847 0.92874 0.88533 0.91367 0.91237 0.78488 0.88407 0.88376 0.87991 0.86457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.95 11.15 55.49 0.62 -22.33 16 2 C 0.03 0.72 4.97 -17.45 -0.09 0.63 16 3 Si 0.93 19.77 29.58 -169.99 -5.03 14.74 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 7 C -0.30 -7.90 8.65 -15.10 -0.13 -8.03 16 8 H 0.09 2.35 6.88 -52.49 -0.36 1.99 16 9 N -0.45 -11.29 2.98 -112.55 -0.34 -11.63 16 10 C 0.15 3.47 4.97 -3.60 -0.02 3.45 16 11 C -0.14 -2.74 5.75 -26.58 -0.15 -2.90 16 12 C 0.17 3.21 3.57 -28.01 -0.10 3.11 16 13 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 14 O -0.57 -10.05 13.13 -35.23 -0.46 -10.52 16 15 C -0.24 -5.09 5.61 -104.40 -0.59 -5.67 16 16 C -0.06 -1.16 9.27 -39.53 -0.37 -1.52 16 17 C -0.24 -4.46 10.04 -39.56 -0.40 -4.85 16 18 C -0.07 -1.40 10.04 -39.64 -0.40 -1.80 16 19 C -0.21 -4.65 9.19 -39.31 -0.36 -5.01 16 20 C 0.22 5.35 6.32 -83.78 -0.53 4.82 16 21 H 0.27 6.75 8.32 -40.82 -0.34 6.41 16 22 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 23 H 0.10 2.36 6.45 -51.93 -0.33 2.02 16 24 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 25 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 26 H 0.37 4.97 7.39 45.56 0.34 5.31 16 27 H 0.10 1.50 6.62 -52.49 -0.35 1.15 16 28 H 0.10 1.57 8.06 -52.49 -0.42 1.14 16 29 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.12 2.68 6.59 -52.49 -0.35 2.34 16 LS Contribution 247.48 15.07 3.73 3.73 Total: -1.00 -27.96 247.48 -7.33 -35.28 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -2.72 Total: 8.50 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -3.13 Total: -17.77 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.28 Total: -33.96 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -0.46 Total: -10.52 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.03 Total: 14.74 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -27.96 -7.33 -35.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163074125.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.436 kcal (2) G-P(sol) polarization free energy of solvation -27.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds