Wall clock time and date at job start Mon Mar 30 2020 02:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31589 * 1 3 3 Si 1.86801 * 119.99854 * 2 1 4 4 H 1.48503 * 109.47239 * 240.00050 * 3 2 1 5 5 H 1.48493 * 109.47546 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46884 * 120.00696 * 3 2 1 7 7 C 1.38793 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00179 * 165.07647 * 7 2 1 9 9 N 1.36858 * 119.99726 * 345.06539 * 7 2 1 10 10 C 1.46909 * 120.52582 * 333.22286 * 9 7 2 11 11 C 1.53425 * 107.81200 * 224.80550 * 10 9 7 12 12 C 1.52861 * 108.84497 * 296.82639 * 11 10 9 13 13 H 1.08990 * 109.13842 * 291.00483 * 12 11 10 14 14 O 1.42893 * 109.30319 * 171.50868 * 12 11 10 15 15 C 1.50595 * 110.46335 * 51.20393 * 12 11 10 16 16 C 1.38450 * 118.94787 * 159.52306 * 15 12 11 17 17 C 1.38174 * 120.31404 * 179.52766 * 16 15 12 18 18 C 1.38355 * 120.19071 * 0.50366 * 17 16 15 19 19 C 1.37971 * 119.92838 * 359.57175 * 18 17 16 20 20 C 1.38773 * 121.49640 * 339.42948 * 15 12 11 21 21 H 0.97002 * 119.99918 * 5.20487 * 1 2 3 22 22 H 1.09003 * 109.79258 * 105.22929 * 10 9 7 23 23 H 1.09005 * 109.79359 * 344.38725 * 10 9 7 24 24 H 1.08999 * 109.57680 * 177.01745 * 11 10 9 25 25 H 1.08999 * 109.67834 * 56.70115 * 11 10 9 26 26 H 0.96704 * 113.99751 * 178.98724 * 14 12 11 27 27 H 1.07999 * 119.83858 * 359.75266 * 16 15 12 28 28 H 1.07993 * 119.90593 * 180.26232 * 17 16 15 29 29 H 1.08001 * 120.03596 * 179.83990 * 18 17 16 30 30 H 1.07999 * 119.99123 * 180.21706 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6178 0.0000 4 1 3.1036 1.6965 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1037 1.6963 1.2125 7 6 2.0099 -1.2020 -0.0005 8 1 3.0625 -1.2176 -0.2414 9 7 1.3602 -2.3673 0.3044 10 6 0.1714 -2.3551 1.1674 11 6 0.3149 -3.4984 2.1803 12 6 0.3346 -4.8274 1.4253 13 1 -0.6525 -5.0125 1.0020 14 8 0.6649 -5.8811 2.3322 15 6 1.3525 -4.7878 0.3161 16 6 1.8303 -5.9812 -0.1979 17 6 2.7574 -5.9778 -1.2224 18 6 3.2231 -4.7803 -1.7355 19 6 2.7541 -3.5857 -1.2289 20 6 1.8168 -3.5858 -0.1992 21 1 -0.4850 0.8366 -0.0762 22 1 -0.7240 -2.5064 0.5644 23 1 0.1066 -1.4023 1.6929 24 1 -0.5286 -3.4830 2.8705 25 1 1.2446 -3.3809 2.7372 26 1 0.6812 -6.7587 1.9263 27 1 1.4740 -6.9193 0.2015 28 1 3.1225 -6.9127 -1.6213 29 1 3.9497 -4.7805 -2.5345 30 1 3.1143 -2.6503 -1.6310 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163074125.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:50 Heat of formation + Delta-G solvation = -33.585055 kcal Electronic energy + Delta-G solvation = -14900.086717 eV Core-core repulsion = 12466.307068 eV Total energy + Delta-G solvation = -2433.779650 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.99238 -37.72743 -37.51820 -34.33483 -32.80095 -31.01819 -30.11127 -27.19349 -24.94802 -23.90057 -22.65761 -20.47785 -19.12462 -18.74836 -17.37902 -16.83162 -16.57806 -16.16121 -15.24854 -15.00919 -14.63460 -14.57202 -14.05684 -13.52287 -13.47910 -12.97843 -12.89376 -12.64696 -12.49649 -12.25244 -12.18048 -11.74168 -11.56305 -11.08512 -10.77787 -10.39985 -9.44710 -8.44695 -8.23727 -5.74288 0.74160 0.97913 1.39570 1.45974 1.49981 2.25535 2.89466 3.12852 3.18242 3.56482 3.95709 4.01865 4.21954 4.33266 4.45812 4.60299 4.73449 4.78369 4.95262 5.02740 5.09830 5.24595 5.35872 5.40232 5.43765 5.75051 5.87302 5.96966 6.08137 6.46518 6.75076 6.89331 7.42451 7.77352 8.72397 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.032694 B = 0.010868 C = 0.008609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.211498 B = 2575.708060 C = 3251.487972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.015 4.015 3 Si 0.989 3.011 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.323 4.323 8 H 0.083 0.917 9 N -0.479 5.479 10 C 0.161 3.839 11 C -0.128 4.128 12 C 0.171 3.829 13 H 0.062 0.938 14 O -0.570 6.570 15 C -0.250 4.250 16 C -0.062 4.062 17 C -0.224 4.224 18 C -0.072 4.072 19 C -0.234 4.234 20 C 0.194 3.806 21 H 0.271 0.729 22 H 0.035 0.965 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.052 0.948 26 H 0.389 0.611 27 H 0.142 0.858 28 H 0.138 0.862 29 H 0.131 0.869 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.264 -8.038 0.625 8.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.216 4.216 3 Si 0.812 3.188 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.451 4.451 8 H 0.101 0.899 9 N -0.170 5.170 10 C 0.037 3.963 11 C -0.166 4.166 12 C 0.113 3.887 13 H 0.079 0.921 14 O -0.378 6.378 15 C -0.256 4.256 16 C -0.080 4.080 17 C -0.245 4.245 18 C -0.091 4.091 19 C -0.258 4.258 20 C 0.081 3.919 21 H 0.080 0.920 22 H 0.053 0.947 23 H 0.092 0.908 24 H 0.110 0.890 25 H 0.071 0.929 26 H 0.239 0.761 27 H 0.160 0.840 28 H 0.156 0.844 29 H 0.149 0.851 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.020 -7.097 1.230 7.274 hybrid contribution 0.235 0.796 -0.628 1.041 sum 1.254 -6.300 0.602 6.452 Atomic orbital electron populations 1.70077 1.07045 1.28617 1.48850 1.26131 0.96348 1.02511 0.96589 0.85044 0.77777 0.76852 0.79081 1.19342 1.20381 1.19537 1.19624 0.93938 0.84261 1.47315 0.89928 1.42818 1.27083 1.02892 1.44228 1.21146 0.87119 0.97339 0.90691 1.21870 1.02573 0.93909 0.98250 1.20107 0.94357 0.87386 0.86864 0.92069 1.86467 1.93583 1.18848 1.38910 1.19992 1.08193 0.92667 1.04773 1.20854 0.95734 0.96191 0.95246 1.20844 1.03763 0.97768 1.02174 1.21048 0.97850 0.91884 0.98307 1.20734 1.05344 0.98536 1.01149 1.18266 0.95041 0.86344 0.92247 0.91993 0.94720 0.90784 0.89011 0.92895 0.76072 0.84006 0.84437 0.85089 0.88284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.63 11.15 21.65 0.24 -49.39 16 2 C -0.02 -0.81 4.97 84.86 0.42 -0.38 16 3 Si 0.99 41.86 29.58 68.60 2.03 43.89 16 4 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 7 C -0.32 -17.63 8.65 84.04 0.73 -16.90 16 8 H 0.08 4.47 6.88 -2.91 -0.02 4.45 16 9 N -0.48 -25.08 2.98 -510.01 -1.52 -26.60 16 10 C 0.16 7.75 4.97 86.44 0.43 8.18 16 11 C -0.13 -5.15 5.75 30.69 0.18 -4.97 16 12 C 0.17 6.32 3.57 29.77 0.11 6.43 16 13 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 14 O -0.57 -18.16 13.13 -148.98 -1.96 -20.12 16 15 C -0.25 -10.21 5.61 -19.72 -0.11 -10.32 16 16 C -0.06 -2.07 9.27 22.31 0.21 -1.86 16 17 C -0.22 -7.35 10.04 22.28 0.22 -7.12 16 18 C -0.07 -2.66 10.04 22.23 0.22 -2.43 16 19 C -0.23 -10.63 9.19 22.45 0.21 -10.43 16 20 C 0.19 9.35 6.32 38.28 0.24 9.59 16 21 H 0.27 14.00 8.32 -92.71 -0.77 13.23 16 22 H 0.03 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.07 3.82 6.45 -2.38 -0.02 3.81 16 24 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 25 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.39 8.62 7.39 -74.05 -0.55 8.07 16 27 H 0.14 3.47 6.62 -2.91 -0.02 3.45 16 28 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 29 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 30 H 0.10 4.74 6.59 -2.91 -0.02 4.72 16 Total: -1.00 -61.90 247.48 2.25 -59.65 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.60 Total: 22.80 kcal Atomic # 6 Polarization: -33.08 SS G_CDS: 2.85 Total: -30.23 kcal Atomic # 7 Polarization: -74.71 SS G_CDS: -1.28 Total: -75.99 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -1.96 Total: -20.12 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -61.90 2.25 -59.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163074125.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.065 kcal (2) G-P(sol) polarization free energy of solvation -61.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds