Wall clock time and date at job start Mon Mar 30 2020 02:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86800 * 119.99823 * 2 1 4 4 H 1.48498 * 109.47190 * 274.51972 * 3 2 1 5 5 H 1.48503 * 109.47191 * 34.52121 * 3 2 1 6 6 H 1.48498 * 109.47218 * 154.52212 * 3 2 1 7 7 C 1.39933 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99471 * 162.13810 * 7 2 1 9 9 C 1.41404 * 119.99933 * 342.40743 * 7 2 1 10 10 C 1.40764 * 120.29001 * 334.93276 * 9 7 2 11 11 C 1.37443 * 119.73011 * 179.82933 * 10 9 7 12 12 C 1.38969 * 120.66403 * 0.02562 * 11 10 9 13 13 C 1.38857 * 120.20384 * 0.23011 * 12 11 10 14 14 C 1.38550 * 119.94908 * 359.42915 * 13 12 11 15 15 O 1.35896 * 121.75975 * 179.60989 * 13 12 11 16 16 C 1.42814 * 117.86236 * 17.39009 * 15 13 12 17 17 C 1.53405 * 108.36052 * 310.67893 * 16 15 13 18 18 C 1.50861 * 118.53166 * 180.48604 * 12 11 10 19 19 H 1.08995 * 109.42753 * 77.61840 * 18 12 11 20 20 N 1.46895 * 109.43256 * 317.75574 * 18 12 11 21 21 H 0.97002 * 119.99536 * 0.02562 * 1 2 3 22 22 H 1.08005 * 120.13695 * 359.80581 * 10 9 7 23 23 H 1.07994 * 119.67117 * 180.02562 * 11 10 9 24 24 H 1.08001 * 119.98921 * 180.43850 * 14 13 12 25 25 H 1.09003 * 109.68896 * 70.39426 * 16 15 13 26 26 H 1.08998 * 109.68770 * 190.92345 * 16 15 13 27 27 H 1.08997 * 109.69395 * 184.58272 * 17 16 15 28 28 H 1.09001 * 109.69251 * 305.15998 * 17 16 15 29 29 H 1.00903 * 110.99456 * 60.00258 * 20 18 12 30 30 H 1.00903 * 111.00022 * 183.95017 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3942 2.1016 -1.3957 5 1 1.4907 2.6232 0.7934 6 1 3.5844 1.4146 0.6022 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2344 -0.2863 9 6 1.3506 -2.4076 0.3712 10 6 0.2241 -2.3665 1.2143 11 6 -0.4082 -3.5356 1.5645 12 6 0.0536 -4.7593 1.0949 13 6 1.1669 -4.8147 0.2669 14 6 1.8130 -3.6461 -0.1026 15 8 1.6501 -5.9943 -0.2041 16 6 0.7929 -7.1354 -0.1513 17 6 0.2058 -7.2339 1.2625 18 6 -0.6836 -6.0114 1.5005 19 1 -1.5937 -6.1043 0.9080 20 7 -1.0345 -5.9323 2.9247 21 1 -0.4849 0.8401 -0.0004 22 1 -0.1417 -1.4203 1.5848 23 1 -1.2726 -3.5029 2.2110 24 1 2.6747 -3.6879 -0.7523 25 1 -0.0131 -7.0230 -0.8765 26 1 1.3654 -8.0355 -0.3753 27 1 -0.3883 -8.1434 1.3510 28 1 1.0128 -7.2491 1.9951 29 1 -1.6253 -5.1350 3.1077 30 1 -1.4723 -6.7860 3.2373 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169268879.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:44 Heat of formation + Delta-G solvation = -47.290241 kcal Electronic energy + Delta-G solvation = -14562.570813 eV Core-core repulsion = 12128.196862 eV Total energy + Delta-G solvation = -2434.373951 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.17091 -38.21458 -36.66187 -35.13276 -31.66546 -31.41058 -30.36715 -27.48230 -25.07210 -23.74988 -22.56782 -20.73279 -19.55816 -17.81881 -17.20870 -16.98139 -16.75862 -15.84259 -15.57690 -15.40019 -14.88404 -14.42750 -14.05628 -13.87092 -13.66224 -13.08424 -12.80247 -12.76082 -12.52226 -12.01141 -11.91147 -11.59764 -11.39020 -11.09994 -10.95822 -9.66375 -9.30354 -8.74644 -8.64172 -6.39102 0.90362 1.11473 1.38302 1.48573 1.55147 2.20273 2.63020 2.72533 3.54751 3.76089 3.90534 4.04854 4.12225 4.32265 4.54134 4.56767 4.68939 4.87592 5.01003 5.06210 5.11121 5.18871 5.32859 5.56084 5.83269 5.88247 6.05985 6.17981 6.30091 6.55241 6.71436 6.82977 6.91781 7.05595 8.30284 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.050160 B = 0.007934 C = 0.007101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.076796 B = 3528.071902 C = 3942.368398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.038 3.962 3 Si 0.985 3.015 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.260 1.260 7 C -0.499 4.499 8 H 0.074 0.926 9 C 0.108 3.892 10 C -0.210 4.210 11 C -0.064 4.064 12 C -0.272 4.272 13 C 0.148 3.852 14 C -0.285 4.285 15 O -0.346 6.346 16 C 0.056 3.944 17 C -0.142 4.142 18 C 0.156 3.844 19 H 0.035 0.965 20 N -0.844 5.844 21 H 0.290 0.710 22 H 0.105 0.895 23 H 0.114 0.886 24 H 0.091 0.909 25 H 0.060 0.940 26 H 0.133 0.867 27 H 0.109 0.891 28 H 0.067 0.933 29 H 0.344 0.656 30 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.161 -8.219 2.189 9.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.178 4.178 3 Si 0.805 3.195 4 H -0.186 1.186 5 H -0.186 1.186 6 H -0.184 1.184 7 C -0.528 4.528 8 H 0.092 0.908 9 C 0.106 3.894 10 C -0.229 4.229 11 C -0.083 4.083 12 C -0.274 4.274 13 C 0.104 3.896 14 C -0.306 4.306 15 O -0.261 6.261 16 C -0.019 4.019 17 C -0.180 4.180 18 C 0.045 3.955 19 H 0.053 0.947 20 N -0.377 5.377 21 H 0.101 0.899 22 H 0.123 0.877 23 H 0.132 0.868 24 H 0.109 0.891 25 H 0.079 0.921 26 H 0.150 0.850 27 H 0.128 0.872 28 H 0.086 0.914 29 H 0.158 0.842 30 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.430 -8.046 2.224 8.694 hybrid contribution -0.817 0.767 -0.407 1.193 sum -3.247 -7.279 1.817 8.175 Atomic orbital electron populations 1.69883 1.09009 1.30768 1.34792 1.26789 0.95555 1.04518 0.90955 0.85156 0.79145 0.75658 0.79519 1.18559 1.18589 1.18391 1.19825 0.98333 0.92396 1.42251 0.90764 1.17658 0.91386 0.91911 0.88454 1.21187 1.00861 0.97255 1.03601 1.20560 0.98348 0.91635 0.97770 1.19417 1.02509 0.95745 1.09703 1.18529 0.93335 0.84252 0.93493 1.20559 1.07414 0.91175 1.11416 1.85891 1.43417 1.16768 1.80031 1.23162 0.94587 0.87303 0.96871 1.22184 1.00403 0.98316 0.97107 1.19765 0.95173 0.91785 0.88774 0.94743 1.58658 1.53131 1.08846 1.17027 0.89895 0.87724 0.86836 0.89052 0.92120 0.84959 0.87234 0.91432 0.84224 0.83554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.32 10.99 21.82 0.24 -43.08 16 2 C 0.04 1.93 5.14 85.25 0.44 2.37 16 3 Si 0.99 38.79 29.59 68.60 2.03 40.82 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 6 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.50 -28.19 9.05 23.46 0.21 -27.98 16 8 H 0.07 4.08 7.91 -2.91 -0.02 4.06 16 9 C 0.11 6.23 5.56 -21.35 -0.12 6.11 16 10 C -0.21 -11.44 8.69 22.70 0.20 -11.24 16 11 C -0.06 -3.06 9.21 22.26 0.20 -2.85 16 12 C -0.27 -12.19 5.59 -19.49 -0.11 -12.30 16 13 C 0.15 7.29 6.46 22.49 0.15 7.43 16 14 C -0.29 -15.67 9.67 22.88 0.22 -15.45 16 15 O -0.35 -14.70 10.26 -92.38 -0.95 -15.65 16 16 C 0.06 1.65 7.03 72.12 0.51 2.16 16 17 C -0.14 -3.95 5.72 30.74 0.18 -3.78 16 18 C 0.16 5.19 3.41 44.23 0.15 5.34 16 19 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 20 N -0.84 -24.29 9.08 -171.55 -1.56 -25.84 16 21 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 22 H 0.10 5.87 6.21 -2.91 -0.02 5.85 16 23 H 0.11 4.64 6.59 -2.91 -0.02 4.62 16 24 H 0.09 4.96 8.06 -2.91 -0.02 4.93 16 25 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 27 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.34 9.66 7.30 -89.69 -0.65 9.01 16 30 H 0.35 7.51 8.99 -89.69 -0.81 6.70 16 Total: -1.00 -65.03 250.84 1.50 -63.53 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: -0.29 Total: 30.41 kcal Atomic # 6 Polarization: -52.22 SS G_CDS: 2.03 Total: -50.19 kcal Atomic # 7 Polarization: -67.60 SS G_CDS: -1.32 Total: -68.92 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.95 Total: -15.65 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.82 kcal Total: -65.03 1.50 -63.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169268879.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.244 kcal (2) G-P(sol) polarization free energy of solvation -65.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds