Wall clock time and date at job start Mon Mar 30 2020 02:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86795 * 120.00232 * 2 1 4 4 H 1.48495 * 109.47126 * 270.00122 * 3 2 1 5 5 H 1.48501 * 109.47215 * 30.00479 * 3 2 1 6 6 H 1.48498 * 109.47175 * 150.00298 * 3 2 1 7 7 C 1.38651 * 119.99754 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00292 * 359.97438 * 7 2 1 9 9 O 1.34807 * 120.00114 * 179.97438 * 7 2 1 10 10 C 1.35640 * 117.00127 * 185.06558 * 9 7 2 11 11 C 1.38738 * 120.14722 * 354.43316 * 10 9 7 12 12 C 1.38119 * 120.06966 * 180.02562 * 11 10 9 13 13 C 1.38478 * 120.36949 * 359.97438 * 12 11 10 14 14 C 1.37959 * 120.29418 * 0.02562 * 13 12 11 15 15 C 1.39502 * 119.92617 * 0.02562 * 14 13 12 16 16 C 1.47667 * 120.18174 * 180.02562 * 15 14 13 17 17 C 1.32666 * 120.00604 * 40.77054 * 16 15 14 18 18 C 1.50706 * 119.99459 * 7.28444 * 17 16 15 19 19 N 1.46905 * 109.47239 * 126.57796 * 18 17 16 20 20 H 0.96999 * 119.99539 * 359.97438 * 1 2 3 21 21 H 1.08001 * 119.96418 * 359.97438 * 11 10 9 22 22 H 1.08003 * 119.81411 * 179.69950 * 12 11 10 23 23 H 1.07998 * 119.85241 * 180.02562 * 13 12 11 24 24 H 1.08000 * 120.03597 * 180.02562 * 14 13 12 25 25 H 1.08004 * 119.99983 * 220.77403 * 16 15 14 26 26 H 1.07993 * 120.00584 * 187.28638 * 17 16 15 27 27 H 1.09001 * 109.47245 * 246.57668 * 18 17 16 28 28 H 1.08999 * 109.47476 * 6.57853 * 18 17 16 29 29 H 1.00900 * 111.00125 * 179.97438 * 19 18 17 30 30 H 1.00896 * 110.99925 * 303.95720 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4000 5 1 1.4472 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3569 -1.2009 -0.0011 10 6 3.9726 -2.4047 -0.1083 11 6 3.2249 -3.5733 -0.0950 12 6 3.8536 -4.7984 -0.2038 13 6 5.2310 -4.8699 -0.3271 14 6 5.9892 -3.7174 -0.3420 15 6 5.3671 -2.4736 -0.2319 16 6 6.1731 -1.2364 -0.2478 17 6 7.1945 -1.1208 -1.0864 18 6 7.4332 -2.1782 -2.1334 19 7 7.5217 -1.5460 -3.4565 20 1 -0.4849 0.8401 0.0004 21 1 2.1503 -3.5251 0.0013 22 1 3.2680 -5.7057 -0.1881 23 1 5.7139 -5.8322 -0.4120 24 1 7.0631 -3.7780 -0.4388 25 1 5.9310 -0.4256 0.4234 26 1 7.8550 -0.2690 -1.0188 27 1 8.3654 -2.6999 -1.9170 28 1 6.6080 -2.8902 -2.1254 29 1 7.6820 -2.2347 -4.1763 30 1 6.6948 -1.0024 -3.6535 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211576865.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:59 Heat of formation + Delta-G solvation = -3.379117 kcal Electronic energy + Delta-G solvation = -14314.618538 eV Core-core repulsion = 11882.148716 eV Total energy + Delta-G solvation = -2432.469822 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.03640 -38.64489 -36.74443 -34.50901 -33.58519 -30.93431 -30.18255 -27.23952 -26.02245 -23.31154 -22.89077 -20.33960 -19.79661 -18.64025 -17.11190 -16.79388 -16.42891 -15.97233 -15.83240 -15.53086 -15.30554 -14.55637 -14.41256 -14.20256 -13.99060 -13.24692 -13.07674 -12.68574 -12.57249 -12.40567 -12.10645 -11.86946 -11.29494 -10.95022 -10.66380 -9.73911 -9.28455 -8.87961 -8.53630 -6.24971 0.21526 0.65239 1.28313 1.32116 1.46727 1.48406 2.24466 2.75568 3.01996 3.14429 3.77810 3.93817 4.09476 4.18884 4.26173 4.47024 4.59201 4.61429 4.77452 4.90715 4.98054 5.21435 5.36409 5.47063 5.59458 5.70138 5.77148 5.83537 5.90749 6.20461 6.25559 6.59015 6.81035 7.56299 8.57947 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.024847 B = 0.010406 C = 0.007969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.616480 B = 2690.124003 C = 3512.570029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.013 3.987 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.400 4.400 8 H 0.081 0.919 9 O -0.235 6.235 10 C 0.127 3.873 11 C -0.244 4.244 12 C -0.074 4.074 13 C -0.184 4.184 14 C -0.060 4.060 15 C -0.138 4.138 16 C -0.109 4.109 17 C -0.148 4.148 18 C 0.081 3.919 19 N -0.853 5.853 20 H 0.285 0.715 21 H 0.108 0.892 22 H 0.140 0.860 23 H 0.155 0.845 24 H 0.153 0.847 25 H 0.100 0.900 26 H 0.126 0.874 27 H 0.095 0.905 28 H 0.042 0.958 29 H 0.352 0.648 30 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.726 -6.012 -3.185 15.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.186 4.186 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.476 4.476 8 H 0.099 0.901 9 O -0.142 6.142 10 C 0.077 3.923 11 C -0.263 4.263 12 C -0.092 4.092 13 C -0.203 4.203 14 C -0.078 4.078 15 C -0.139 4.139 16 C -0.128 4.128 17 C -0.167 4.167 18 C -0.049 4.049 19 N -0.384 5.384 20 H 0.095 0.905 21 H 0.126 0.874 22 H 0.158 0.842 23 H 0.173 0.827 24 H 0.170 0.830 25 H 0.118 0.882 26 H 0.144 0.856 27 H 0.113 0.887 28 H 0.060 0.940 29 H 0.165 0.835 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 14.262 -5.302 -2.871 15.484 hybrid contribution -1.609 0.186 0.012 1.619 sum 12.653 -5.116 -2.859 13.944 Atomic orbital electron populations 1.69724 1.06852 1.29603 1.50003 1.25230 0.95829 1.01991 0.95506 0.85276 0.78888 0.77642 0.79321 1.19108 1.19177 1.18685 1.20719 0.78182 0.96099 1.52603 0.90138 1.83483 1.21021 1.27278 1.82427 1.19782 0.92501 0.85208 0.94790 1.21301 1.00262 0.93380 1.11339 1.21235 0.95695 0.96178 0.96127 1.21175 0.93146 0.99188 1.06742 1.21316 1.00443 0.89835 0.96223 1.18524 0.88944 0.95447 1.11012 1.21487 0.95103 0.95467 1.00762 1.23226 0.97143 1.00777 0.95527 1.21209 1.01369 0.94344 0.87962 1.58685 1.45758 1.30164 1.03745 0.90537 0.87429 0.84180 0.82715 0.82957 0.88242 0.85593 0.88705 0.93970 0.83488 0.84881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.17 13.96 21.61 0.30 -54.86 16 2 C 0.01 0.76 5.49 84.83 0.47 1.23 16 3 Si 0.97 45.79 28.62 68.60 1.96 47.76 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.40 -23.63 9.95 67.92 0.68 -22.95 16 8 H 0.08 4.99 5.44 -2.91 -0.02 4.97 16 9 O -0.24 -12.79 8.04 -21.29 -0.17 -12.96 16 10 C 0.13 5.96 6.66 22.86 0.15 6.11 16 11 C -0.24 -10.68 9.16 22.36 0.20 -10.47 16 12 C -0.07 -2.49 10.03 22.30 0.22 -2.26 16 13 C -0.18 -5.18 10.03 22.26 0.22 -4.96 16 14 C -0.06 -1.80 7.32 22.51 0.16 -1.64 16 15 C -0.14 -5.28 5.10 -20.01 -0.10 -5.39 16 16 C -0.11 -3.88 9.33 23.59 0.22 -3.66 16 17 C -0.15 -4.27 9.73 24.52 0.24 -4.03 16 18 C 0.08 1.97 5.62 85.56 0.48 2.45 16 19 N -0.85 -19.56 9.61 -189.99 -1.83 -21.39 16 20 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 21 H 0.11 5.20 5.64 -2.91 -0.02 5.19 16 22 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 23 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 24 H 0.15 3.49 6.61 -2.91 -0.02 3.47 16 25 H 0.10 3.82 8.06 -2.91 -0.02 3.80 16 26 H 0.13 3.29 8.06 -2.91 -0.02 3.27 16 27 H 0.09 1.90 8.07 -2.39 -0.02 1.88 16 28 H 0.04 1.14 4.85 -2.39 -0.01 1.13 16 29 H 0.35 6.39 9.08 -89.69 -0.81 5.57 16 30 H 0.34 8.37 8.98 -89.70 -0.81 7.56 16 Total: -1.00 -65.57 259.17 2.77 -62.80 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: -0.45 Total: 24.22 kcal Atomic # 6 Polarization: -48.52 SS G_CDS: 2.95 Total: -45.58 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -1.52 Total: -76.25 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.17 Total: -12.96 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.96 Total: 47.76 kcal Total: -65.57 2.77 -62.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211576865.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.425 kcal (2) G-P(sol) polarization free energy of solvation -65.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds