Wall clock time and date at job start Mon Mar 30 2020 02:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86802 * 120.00065 * 2 1 4 4 H 1.48496 * 109.47056 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46914 * 299.99929 * 3 2 1 6 6 H 1.48504 * 109.47163 * 59.99704 * 3 2 1 7 7 C 1.39888 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00008 * 197.93991 * 7 2 1 9 9 C 1.41212 * 120.00149 * 17.93307 * 7 2 1 10 10 C 1.40851 * 120.17789 * 24.53843 * 9 7 2 11 11 C 1.36426 * 119.81294 * 180.02562 * 10 9 7 12 12 C 1.39336 * 120.18000 * 359.97438 * 11 10 9 13 13 O 1.35675 * 119.81319 * 179.97438 * 12 11 10 14 14 C 1.39291 * 120.36983 * 0.25723 * 12 11 10 15 15 C 1.50696 * 119.91002 * 179.74188 * 14 12 11 16 16 H 1.09007 * 112.95467 * 51.65186 * 15 14 12 17 17 C 1.53929 * 113.76133 * 280.00219 * 15 14 12 18 18 C 1.53933 * 86.34275 * 221.95775 * 17 15 14 19 19 N 1.47956 * 113.76078 * 183.43786 * 15 14 12 20 20 C 1.36464 * 120.18213 * 359.48585 * 14 12 11 21 21 H 0.96996 * 120.00064 * 359.97438 * 1 2 3 22 22 H 1.07997 * 120.09679 * 0.03769 * 10 9 7 23 23 H 1.07991 * 119.90953 * 180.02562 * 11 10 9 24 24 H 0.96693 * 114.00540 * 90.00087 * 13 12 11 25 25 H 1.08998 * 113.73510 * 336.32243 * 17 15 14 26 26 H 1.09005 * 113.73364 * 107.49922 * 17 15 14 27 27 H 1.09005 * 113.75984 * 138.03613 * 18 17 15 28 28 H 1.08994 * 113.76266 * 269.29200 * 18 17 15 29 29 H 1.00904 * 111.00312 * 251.90560 * 19 15 14 30 30 H 1.08000 * 120.09153 * 180.27624 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7028 1.3464 0.0006 5 1 1.8841 2.3964 -1.2125 6 1 1.8841 2.3965 1.2125 7 6 2.0082 -1.2115 0.0005 8 1 3.0489 -1.2341 0.2887 9 6 1.3536 -2.4049 -0.3755 10 6 0.2243 -2.3584 -1.2159 11 6 -0.4027 -3.5159 -1.5741 12 6 0.0715 -4.7416 -1.1113 13 8 -0.5581 -5.8881 -1.4717 14 6 1.1848 -4.7960 -0.2759 15 6 1.6854 -6.1268 0.2232 16 1 1.8407 -6.8501 -0.5774 17 6 0.8855 -6.6830 1.4150 18 6 2.2455 -7.0863 2.0127 19 7 2.8231 -6.0214 1.1633 20 6 1.8266 -3.6478 0.0875 21 1 -0.4850 0.8400 0.0004 22 1 -0.1441 -1.4092 -1.5760 23 1 -1.2684 -3.4821 -2.2188 24 1 -0.2169 -6.2854 -2.2846 25 1 0.3638 -5.9171 1.9889 26 1 0.2486 -7.5297 1.1591 27 1 2.3310 -6.8903 3.0816 28 1 2.5653 -8.0914 1.7380 29 1 3.6804 -6.3298 0.7296 30 1 2.6923 -3.6921 0.7317 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211635438.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:04 Heat of formation + Delta-G solvation = 3.995121 kcal Electronic energy + Delta-G solvation = -14431.990343 eV Core-core repulsion = 11999.840292 eV Total energy + Delta-G solvation = -2432.150051 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.36885 -37.53823 -35.64085 -33.20777 -29.99206 -29.16643 -27.11771 -25.14400 -24.47853 -20.96111 -20.65101 -18.97159 -17.14733 -17.05294 -16.50647 -15.31069 -14.62569 -14.21445 -14.14321 -13.37288 -12.82765 -12.50701 -12.26263 -11.71319 -11.49150 -11.37511 -11.16590 -10.97010 -10.71646 -10.66380 -10.35187 -10.05624 -9.74905 -9.16489 -8.88447 -8.49815 -7.44436 -7.15615 -6.76310 -4.30001 2.67600 3.02405 3.08149 3.13141 3.15554 3.93890 4.42863 4.55372 5.03442 5.23809 5.45315 5.58130 5.66039 5.84579 5.97370 6.11527 6.19746 6.27822 6.49923 6.57754 7.06006 7.12270 7.21517 7.31434 7.58106 7.60550 7.70374 8.05546 8.09057 8.26621 8.56861 8.75522 8.89886 9.08000 10.18521 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.035811 B = 0.008509 C = 0.007234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.702783 B = 3290.028318 C = 3869.468176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.074 3.926 3 Si 0.907 3.093 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.456 4.456 8 H 0.079 0.921 9 C 0.103 3.897 10 C -0.159 4.159 11 C -0.118 4.118 12 C -0.041 4.041 13 O -0.501 6.501 14 C -0.066 4.066 15 C 0.092 3.908 16 H 0.068 0.932 17 C -0.127 4.127 18 C -0.001 4.001 19 N -0.623 5.623 20 C -0.186 4.186 21 H 0.280 0.720 22 H 0.119 0.881 23 H 0.092 0.908 24 H 0.348 0.652 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.310 0.690 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.732 -7.220 -0.569 7.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.485 4.485 8 H 0.097 0.903 9 C 0.100 3.900 10 C -0.179 4.179 11 C -0.137 4.137 12 C -0.086 4.086 13 O -0.307 6.307 14 C -0.067 4.067 15 C -0.018 4.018 16 H 0.086 0.914 17 C -0.165 4.165 18 C -0.132 4.132 19 N -0.247 5.247 20 C -0.206 4.206 21 H 0.091 0.909 22 H 0.137 0.863 23 H 0.110 0.890 24 H 0.199 0.801 25 H 0.108 0.892 26 H 0.084 0.916 27 H 0.101 0.899 28 H 0.076 0.924 29 H 0.122 0.878 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.116 -6.197 0.415 6.561 hybrid contribution 0.636 -0.160 -0.941 1.147 sum 2.752 -6.357 -0.526 6.947 Atomic orbital electron populations 1.69865 1.07595 1.29133 1.35113 1.25936 0.94721 1.01384 0.92288 0.86275 0.81051 0.80957 0.78536 1.18348 1.19725 1.19995 1.19586 0.98269 0.91217 1.39420 0.90278 1.17717 0.91259 0.92265 0.88733 1.20992 0.99199 0.96657 1.01035 1.20671 0.99324 0.92749 1.00937 1.17785 0.98698 0.84497 1.07664 1.84848 1.61398 1.39304 1.45161 1.18973 0.95224 0.93244 0.99288 1.21777 0.91100 0.95340 0.93625 0.91446 1.23291 0.95838 1.00530 0.96862 1.23612 0.95952 0.93873 0.99720 1.66901 1.03599 1.39568 1.14614 1.20588 1.03434 0.91284 1.05310 0.90910 0.86281 0.88982 0.80094 0.89233 0.91635 0.89912 0.92438 0.87778 0.87155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.69 10.96 55.54 0.61 -20.08 16 2 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 3 Si 0.91 18.76 29.60 -169.99 -5.03 13.72 16 4 H -0.26 -5.32 7.11 56.52 0.40 -4.91 16 5 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.46 -12.20 9.04 -37.84 -0.34 -12.55 16 8 H 0.08 2.05 7.91 -52.48 -0.41 1.63 16 9 C 0.10 2.77 5.57 -106.80 -0.60 2.18 16 10 C -0.16 -4.21 8.64 -39.25 -0.34 -4.55 16 11 C -0.12 -2.87 9.92 -39.83 -0.40 -3.27 16 12 C -0.04 -0.96 6.70 -38.78 -0.26 -1.22 16 13 O -0.50 -10.05 12.90 -18.73 -0.24 -10.29 16 14 C -0.07 -1.51 5.34 -104.87 -0.56 -2.07 16 15 C 0.09 1.69 4.02 -67.81 -0.27 1.42 16 16 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 17 C -0.13 -2.14 7.84 -25.80 -0.20 -2.35 16 18 C 0.00 -0.02 8.90 -2.77 -0.02 -0.04 16 19 N -0.62 -10.57 7.00 -111.54 -0.78 -11.35 16 20 C -0.19 -4.67 9.15 -39.25 -0.36 -5.03 16 21 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 22 H 0.12 3.23 6.16 -52.49 -0.32 2.90 16 23 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 24 H 0.35 5.37 9.06 45.56 0.41 5.78 16 25 H 0.09 1.70 8.09 -51.93 -0.42 1.28 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.31 4.57 8.91 -39.29 -0.35 4.22 16 30 H 0.11 2.73 7.11 -52.49 -0.37 2.35 16 LS Contribution 258.21 15.07 3.89 3.89 Total: -1.00 -28.96 258.21 -7.71 -36.67 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -2.72 Total: 13.11 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: -3.44 Total: -25.68 kcal Atomic # 7 Polarization: -31.26 SS G_CDS: -0.17 Total: -31.43 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -0.24 Total: -10.29 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.96 -7.71 -36.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211635438.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.670 kcal (2) G-P(sol) polarization free energy of solvation -28.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds