Wall clock time and date at job start Mon Mar 30 2020 02:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86795 * 120.00328 * 2 1 4 4 H 1.48502 * 109.47847 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47004 * 300.00151 * 3 2 1 6 6 H 1.48502 * 109.47272 * 59.99756 * 3 2 1 7 7 C 1.39894 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00596 * 162.26454 * 7 2 1 9 9 C 1.41220 * 119.99800 * 342.27256 * 7 2 1 10 10 C 1.40859 * 120.25811 * 335.25705 * 9 7 2 11 11 C 1.36230 * 119.70532 * 179.79475 * 10 9 7 12 12 C 1.39785 * 120.54896 * 0.04637 * 11 10 9 13 13 C 1.39028 * 120.06141 * 0.17365 * 12 11 10 14 14 C 1.36815 * 120.07558 * 359.74148 * 13 12 11 15 15 C 1.50819 * 121.35260 * 179.71283 * 13 12 11 16 16 H 1.08997 * 109.40850 * 257.69796 * 15 13 12 17 17 N 1.46908 * 109.43837 * 137.79954 * 15 13 12 18 18 C 1.53066 * 109.66353 * 17.74452 * 15 13 12 19 19 C 1.53406 * 108.26849 * 311.73452 * 18 15 13 20 20 O 1.35701 * 118.27587 * 180.22319 * 12 11 10 21 21 H 0.96998 * 120.00138 * 359.97438 * 1 2 3 22 22 H 1.07996 * 120.14623 * 359.77614 * 10 9 7 23 23 H 1.08001 * 119.72207 * 180.02562 * 11 10 9 24 24 H 1.07993 * 119.93949 * 180.09783 * 14 13 12 25 25 H 1.00904 * 110.99843 * 179.80242 * 17 15 13 26 26 H 1.00900 * 110.99669 * 303.76300 * 17 15 13 27 27 H 1.08999 * 109.70507 * 71.42843 * 18 15 13 28 28 H 1.09000 * 109.70217 * 192.00428 * 18 15 13 29 29 H 1.09009 * 109.67353 * 184.65237 * 19 18 15 30 30 H 1.08997 * 109.68090 * 305.16174 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 3.7028 1.3464 -0.0006 5 1 1.8841 2.3964 -1.2125 6 1 1.8841 2.3964 1.2125 7 6 2.0083 -1.2115 0.0005 8 1 3.0498 -1.2339 -0.2844 9 6 1.3525 -2.4053 0.3735 10 6 0.2229 -2.3619 1.2139 11 6 -0.4035 -3.5201 1.5632 12 6 0.0659 -4.7508 1.0953 13 6 1.1830 -4.8016 0.2692 14 6 1.8219 -3.6469 -0.0918 15 6 1.7181 -6.1138 -0.2471 16 1 2.5987 -6.3977 0.3291 17 7 2.0856 -5.9691 -1.6621 18 6 0.6465 -7.1978 -0.1074 19 6 0.0734 -7.1271 1.3138 20 8 -0.5960 -5.8752 1.4683 21 1 -0.4850 0.8400 0.0004 22 1 -0.1447 -1.4147 1.5800 23 1 -1.2699 -3.4871 2.2072 24 1 2.6884 -3.6889 -0.7349 25 1 2.4503 -6.8345 -2.0312 26 1 1.3013 -5.6451 -2.2080 27 1 -0.1481 -7.0247 -0.8331 28 1 1.0915 -8.1784 -0.2764 29 1 -0.6339 -7.9426 1.4653 30 1 0.8825 -7.2033 2.0402 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211643061.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:18 Heat of formation + Delta-G solvation = -26.157515 kcal Electronic energy + Delta-G solvation = -14604.518166 eV Core-core repulsion = 12171.060598 eV Total energy + Delta-G solvation = -2433.457568 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.54426 -36.42159 -35.17303 -33.26027 -30.16363 -29.26919 -29.04117 -25.40728 -23.27781 -22.42251 -20.66469 -19.34023 -17.21414 -16.61642 -15.66329 -15.44509 -14.94919 -14.54255 -13.82398 -13.47248 -12.83912 -12.66191 -12.49066 -12.35388 -11.90752 -11.43733 -11.26245 -11.04212 -10.71379 -10.58275 -10.45463 -10.01263 -9.64445 -9.25362 -8.91757 -8.28199 -7.47232 -6.95890 -6.67626 -4.19383 2.77472 2.96833 3.12240 3.17776 3.21654 3.99788 4.31617 4.62351 4.93365 5.13852 5.22951 5.33441 5.65129 5.72352 5.87617 5.96630 6.05213 6.31651 6.45684 6.80387 7.08134 7.14211 7.25398 7.45170 7.56193 7.60705 7.81333 7.95152 8.07744 8.27621 8.52894 8.72399 8.96170 9.05160 10.27428 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.047059 B = 0.008249 C = 0.007298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.855716 B = 3393.445427 C = 3835.866242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.461 4.461 8 H 0.077 0.923 9 C 0.085 3.915 10 C -0.133 4.133 11 C -0.124 4.124 12 C -0.003 4.003 13 C -0.131 4.131 14 C -0.169 4.169 15 C 0.142 3.858 16 H 0.077 0.923 17 N -0.833 5.833 18 C -0.190 4.190 19 C 0.072 3.928 20 O -0.330 6.330 21 H 0.278 0.722 22 H 0.124 0.876 23 H 0.096 0.904 24 H 0.106 0.894 25 H 0.330 0.670 26 H 0.343 0.657 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.069 -8.088 -0.015 8.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.142 4.142 3 Si 0.730 3.270 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.198 1.198 7 C -0.491 4.491 8 H 0.095 0.905 9 C 0.083 3.917 10 C -0.153 4.153 11 C -0.143 4.143 12 C -0.047 4.047 13 C -0.132 4.132 14 C -0.189 4.189 15 C 0.030 3.970 16 H 0.095 0.905 17 N -0.360 5.360 18 C -0.230 4.230 19 C -0.005 4.005 20 O -0.246 6.246 21 H 0.089 0.911 22 H 0.142 0.858 23 H 0.114 0.886 24 H 0.124 0.876 25 H 0.142 0.858 26 H 0.156 0.844 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.233 -7.374 0.283 7.482 hybrid contribution -0.267 -0.103 -0.351 0.453 sum 0.965 -7.476 -0.069 7.539 Atomic orbital electron populations 1.69843 1.07484 1.28904 1.36449 1.25867 0.94696 1.01171 0.92440 0.86310 0.81025 0.81214 0.78427 1.18476 1.20138 1.19828 1.19481 0.98049 0.91148 1.40388 0.90509 1.17619 0.91840 0.92276 0.89951 1.20959 0.98461 0.96244 0.99621 1.19963 1.01076 0.90579 1.02661 1.18379 0.97042 0.85023 1.04232 1.18954 0.97975 0.94341 1.01912 1.20568 1.02983 0.91209 1.04186 1.20138 0.95129 0.92114 0.89572 0.90499 1.58845 1.39511 1.35009 1.02658 1.23072 1.00691 1.00083 0.99108 1.22529 0.96758 0.85927 0.95252 1.85803 1.42791 1.12814 1.83189 0.91088 0.85846 0.88612 0.87560 0.85821 0.84390 0.91190 0.91482 0.89410 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.99 10.97 55.54 0.61 -20.38 16 2 C 0.07 1.90 5.14 -17.34 -0.09 1.81 16 3 Si 0.91 18.98 29.59 -169.99 -5.03 13.95 16 4 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.46 -12.40 9.04 -37.83 -0.34 -12.75 16 8 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 9 C 0.09 2.31 5.57 -106.86 -0.59 1.71 16 10 C -0.13 -3.53 8.64 -39.31 -0.34 -3.87 16 11 C -0.12 -3.06 9.87 -39.73 -0.39 -3.45 16 12 C 0.00 -0.07 6.51 -38.71 -0.25 -0.33 16 13 C -0.13 -2.95 5.46 -104.79 -0.57 -3.52 16 14 C -0.17 -4.22 8.95 -39.18 -0.35 -4.57 16 15 C 0.14 2.51 3.37 -68.77 -0.23 2.28 16 16 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 17 N -0.83 -13.36 8.43 -5.57 -0.05 -13.41 16 18 C -0.19 -2.85 5.76 -26.49 -0.15 -3.00 16 19 C 0.07 1.15 7.02 37.37 0.26 1.42 16 20 O -0.33 -6.94 10.26 -18.81 -0.19 -7.14 16 21 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 22 H 0.12 3.34 6.19 -52.49 -0.32 3.02 16 23 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 24 H 0.11 2.60 7.66 -52.49 -0.40 2.20 16 25 H 0.33 4.18 9.04 -39.29 -0.36 3.83 16 26 H 0.34 5.61 8.98 -39.29 -0.35 5.26 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 1.14 8.14 -51.92 -0.42 0.71 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 252.72 15.07 3.81 3.81 Total: -1.00 -28.55 252.72 -7.43 -35.98 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -3.52 Total: 11.45 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: -3.05 Total: -24.26 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.56 Total: -33.79 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -0.19 Total: -7.14 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.55 -7.43 -35.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211643061.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.825 kcal (2) G-P(sol) polarization free energy of solvation -28.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds