Wall clock time and date at job start Mon Mar 30 2020 02:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86795 * 120.00328 * 2 1 4 4 H 1.48502 * 109.47847 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47004 * 300.00151 * 3 2 1 6 6 H 1.48502 * 109.47272 * 59.99756 * 3 2 1 7 7 C 1.39894 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00596 * 162.26454 * 7 2 1 9 9 C 1.41220 * 119.99800 * 342.27256 * 7 2 1 10 10 C 1.40859 * 120.25811 * 335.25705 * 9 7 2 11 11 C 1.36230 * 119.70532 * 179.79475 * 10 9 7 12 12 C 1.39785 * 120.54896 * 0.04637 * 11 10 9 13 13 C 1.39028 * 120.06141 * 0.17365 * 12 11 10 14 14 C 1.36815 * 120.07558 * 359.74148 * 13 12 11 15 15 C 1.50819 * 121.35260 * 179.71283 * 13 12 11 16 16 H 1.08997 * 109.40850 * 257.69796 * 15 13 12 17 17 N 1.46908 * 109.43837 * 137.79954 * 15 13 12 18 18 C 1.53066 * 109.66353 * 17.74452 * 15 13 12 19 19 C 1.53406 * 108.26849 * 311.73452 * 18 15 13 20 20 O 1.35701 * 118.27587 * 180.22319 * 12 11 10 21 21 H 0.96998 * 120.00138 * 359.97438 * 1 2 3 22 22 H 1.07996 * 120.14623 * 359.77614 * 10 9 7 23 23 H 1.08001 * 119.72207 * 180.02562 * 11 10 9 24 24 H 1.07993 * 119.93949 * 180.09783 * 14 13 12 25 25 H 1.00904 * 110.99843 * 179.80242 * 17 15 13 26 26 H 1.00900 * 110.99669 * 303.76300 * 17 15 13 27 27 H 1.08999 * 109.70507 * 71.42843 * 18 15 13 28 28 H 1.09000 * 109.70217 * 192.00428 * 18 15 13 29 29 H 1.09009 * 109.67353 * 184.65237 * 19 18 15 30 30 H 1.08997 * 109.68090 * 305.16174 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 3.7028 1.3464 -0.0006 5 1 1.8841 2.3964 -1.2125 6 1 1.8841 2.3964 1.2125 7 6 2.0083 -1.2115 0.0005 8 1 3.0498 -1.2339 -0.2844 9 6 1.3525 -2.4053 0.3735 10 6 0.2229 -2.3619 1.2139 11 6 -0.4035 -3.5201 1.5632 12 6 0.0659 -4.7508 1.0953 13 6 1.1830 -4.8016 0.2692 14 6 1.8219 -3.6469 -0.0918 15 6 1.7181 -6.1138 -0.2471 16 1 2.5987 -6.3977 0.3291 17 7 2.0856 -5.9691 -1.6621 18 6 0.6465 -7.1978 -0.1074 19 6 0.0734 -7.1271 1.3138 20 8 -0.5960 -5.8752 1.4683 21 1 -0.4850 0.8400 0.0004 22 1 -0.1447 -1.4147 1.5800 23 1 -1.2699 -3.4871 2.2072 24 1 2.6884 -3.6889 -0.7349 25 1 2.4503 -6.8345 -2.0312 26 1 1.3013 -5.6451 -2.2080 27 1 -0.1481 -7.0247 -0.8331 28 1 1.0915 -8.1784 -0.2764 29 1 -0.6339 -7.9426 1.4653 30 1 0.8825 -7.2033 2.0402 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211643061.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:17 Heat of formation + Delta-G solvation = -45.289850 kcal Electronic energy + Delta-G solvation = -14605.347806 eV Core-core repulsion = 12171.060598 eV Total energy + Delta-G solvation = -2434.287208 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.18020 -38.22983 -36.64471 -35.14128 -31.68256 -31.03066 -30.77953 -27.22177 -24.82031 -24.02906 -22.53341 -20.95782 -18.99908 -18.31778 -17.28763 -17.00317 -16.67585 -15.97775 -15.39692 -15.09735 -14.50519 -14.34227 -14.11449 -13.85459 -13.65293 -13.07274 -13.00780 -12.75891 -12.24958 -12.17753 -12.12152 -11.70526 -11.44449 -11.06051 -10.76144 -9.57255 -9.36372 -8.85459 -8.57800 -6.20032 0.94289 1.03806 1.39927 1.50112 1.55274 2.24251 2.69401 2.82919 3.61537 3.69764 3.87955 3.97936 4.03421 4.38065 4.47795 4.64444 4.67679 4.79919 4.97246 5.11798 5.15671 5.28335 5.33285 5.64805 5.68400 5.95482 6.09502 6.20903 6.33400 6.61545 6.70038 6.86199 6.98862 7.15126 8.39388 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.047059 B = 0.008249 C = 0.007298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.855716 B = 3393.445427 C = 3835.866242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.033 3.967 3 Si 0.981 3.019 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.265 1.265 7 C -0.498 4.498 8 H 0.072 0.928 9 C 0.054 3.946 10 C -0.154 4.154 11 C -0.139 4.139 12 C 0.003 3.997 13 C -0.131 4.131 14 C -0.179 4.179 15 C 0.142 3.858 16 H 0.086 0.914 17 N -0.839 5.839 18 C -0.178 4.178 19 C 0.059 3.941 20 O -0.344 6.344 21 H 0.286 0.714 22 H 0.107 0.893 23 H 0.106 0.894 24 H 0.104 0.896 25 H 0.353 0.647 26 H 0.341 0.659 27 H 0.063 0.937 28 H 0.110 0.890 29 H 0.125 0.875 30 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.541 -9.720 -0.271 9.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.189 1.189 7 C -0.528 4.528 8 H 0.091 0.909 9 C 0.052 3.948 10 C -0.173 4.173 11 C -0.158 4.158 12 C -0.042 4.042 13 C -0.132 4.132 14 C -0.199 4.199 15 C 0.031 3.969 16 H 0.104 0.896 17 N -0.369 5.369 18 C -0.218 4.218 19 C -0.017 4.017 20 O -0.260 6.260 21 H 0.097 0.903 22 H 0.125 0.875 23 H 0.124 0.876 24 H 0.122 0.878 25 H 0.167 0.833 26 H 0.154 0.846 27 H 0.082 0.918 28 H 0.128 0.872 29 H 0.143 0.857 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.706 -9.051 0.023 9.210 hybrid contribution -0.458 0.207 -0.257 0.564 sum 1.249 -8.843 -0.234 8.934 Atomic orbital electron populations 1.69898 1.08924 1.30272 1.36889 1.26717 0.95478 1.04408 0.91397 0.85182 0.79396 0.76375 0.78859 1.18278 1.19140 1.18934 1.19696 0.98145 0.92461 1.42483 0.90945 1.17962 0.92617 0.93454 0.90807 1.20852 0.99336 0.96327 1.00820 1.20162 1.01497 0.91040 1.03084 1.18468 0.96687 0.85706 1.03307 1.19418 0.96986 0.96146 1.00694 1.20656 1.03216 0.91572 1.04437 1.20135 0.96192 0.90225 0.90345 0.89645 1.58724 1.39546 1.36722 1.01900 1.22998 0.99589 1.01059 0.98138 1.23012 0.98168 0.84279 0.96232 1.85775 1.43549 1.13722 1.82970 0.90323 0.87469 0.87556 0.87773 0.83289 0.84635 0.91829 0.87160 0.85678 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.01 10.97 21.82 0.24 -44.77 16 2 C 0.03 1.75 5.14 85.24 0.44 2.18 16 3 Si 0.98 39.51 29.59 68.60 2.03 41.54 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 6 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 7 C -0.50 -27.84 9.04 23.40 0.21 -27.62 16 8 H 0.07 3.94 7.91 -2.91 -0.02 3.92 16 9 C 0.05 3.01 5.57 -21.31 -0.12 2.89 16 10 C -0.15 -8.48 8.64 22.44 0.19 -8.29 16 11 C -0.14 -7.01 9.87 22.18 0.22 -6.80 16 12 C 0.00 0.12 6.51 22.83 0.15 0.27 16 13 C -0.13 -5.84 5.46 -19.97 -0.11 -5.95 16 14 C -0.18 -9.06 8.95 22.53 0.20 -8.86 16 15 C 0.14 4.67 3.37 44.23 0.15 4.82 16 16 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 17 N -0.84 -24.99 8.43 -171.54 -1.45 -26.44 16 18 C -0.18 -4.62 5.76 30.75 0.18 -4.44 16 19 C 0.06 1.65 7.02 72.12 0.51 2.15 16 20 O -0.34 -13.78 10.26 -90.21 -0.93 -14.71 16 21 H 0.29 13.95 8.30 -92.71 -0.77 13.19 16 22 H 0.11 6.13 6.19 -2.91 -0.02 6.12 16 23 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 24 H 0.10 5.20 7.66 -2.91 -0.02 5.18 16 25 H 0.35 7.76 9.04 -89.69 -0.81 6.95 16 26 H 0.34 10.57 8.98 -89.69 -0.81 9.76 16 27 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.13 2.62 8.14 -2.38 -0.02 2.60 16 30 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -63.47 252.72 1.47 -62.00 By element: Atomic # 1 Polarization: 32.48 SS G_CDS: -0.45 Total: 32.03 kcal Atomic # 6 Polarization: -51.66 SS G_CDS: 2.02 Total: -49.65 kcal Atomic # 7 Polarization: -70.01 SS G_CDS: -1.21 Total: -71.21 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.93 Total: -14.71 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Total: -63.47 1.47 -62.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211643061.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.713 kcal (2) G-P(sol) polarization free energy of solvation -63.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds