Wall clock time and date at job start Mon Mar 30 2020 02:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 H 1.09007 * 109.82385 * 55.90169 * 10 9 7 12 12 C 1.53531 * 109.83341 * 176.85791 * 10 9 7 13 13 O 1.42963 * 108.79010 * 61.35360 * 12 10 9 14 14 C 1.35942 * 117.74880 * 49.45707 * 13 12 10 15 15 C 1.38661 * 119.65473 * 159.91760 * 14 13 12 16 16 C 1.38245 * 120.05014 * 179.66123 * 15 14 13 17 17 C 1.38257 * 120.29782 * 0.02562 * 16 15 14 18 18 C 1.38279 * 120.05434 * 359.97438 * 17 16 15 19 19 C 1.38578 * 119.87781 * 0.07298 * 18 17 16 20 20 N 1.40390 * 120.08532 * 179.80875 * 19 18 17 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 23 23 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 24 24 H 1.09007 * 109.58399 * 181.13918 * 12 10 9 25 25 H 1.08996 * 109.59016 * 301.55422 * 12 10 9 26 26 H 1.07997 * 119.97348 * 359.68730 * 15 14 13 27 27 H 1.08001 * 119.84984 * 179.97438 * 16 15 14 28 28 H 1.07992 * 119.96914 * 180.02562 * 17 16 15 29 29 H 1.08001 * 120.05805 * 180.02562 * 18 17 16 30 30 H 0.97007 * 121.14492 * 346.21684 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 1 2.9228 -3.5656 0.8591 12 6 1.4879 -4.9947 0.0956 13 8 0.6473 -5.1208 -1.0539 14 6 1.2051 -4.8978 -2.2734 15 6 0.5891 -5.3966 -3.4111 16 6 1.1454 -5.1687 -4.6560 17 6 2.3169 -4.4441 -4.7743 18 6 2.9382 -3.9428 -3.6453 19 6 2.3852 -4.1693 -2.3950 20 7 3.0145 -3.6658 -1.2454 21 1 -0.4850 0.8400 0.0004 22 1 0.6245 -2.5529 0.8956 23 1 0.6244 -2.5609 -0.8844 24 1 2.2006 -5.8192 0.1193 25 1 0.8773 -5.0109 0.9983 26 1 -0.3262 -5.9633 -3.3247 27 1 0.6631 -5.5591 -5.5400 28 1 2.7467 -4.2689 -5.7495 29 1 3.8532 -3.3765 -3.7377 30 1 3.9252 -3.3331 -1.2769 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213111970.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:52 Heat of formation + Delta-G solvation = -12.813591 kcal Electronic energy + Delta-G solvation = -14692.521053 eV Core-core repulsion = 12259.642121 eV Total energy + Delta-G solvation = -2432.878932 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.12753 -36.95900 -35.17375 -32.82114 -30.83723 -29.84208 -27.63523 -26.41330 -23.67270 -22.19798 -21.96230 -18.89768 -17.48033 -17.00329 -16.33221 -15.55549 -14.71105 -14.52565 -14.34082 -13.84141 -13.34305 -13.20756 -12.55617 -12.39586 -11.97782 -11.51689 -11.11577 -11.00224 -10.90826 -10.50745 -10.39479 -10.13694 -9.92046 -9.24595 -9.02711 -8.39137 -7.88497 -6.67115 -6.01341 -4.03881 1.91379 2.07941 3.29452 3.35882 3.37309 3.79743 4.12412 4.38831 4.43225 5.21875 5.34830 5.39903 5.48225 5.57012 5.72479 5.82855 5.86991 5.96694 6.16762 6.43043 6.68056 6.70824 6.79896 7.02677 7.22536 7.44694 7.67029 7.76811 7.94066 8.13136 8.35086 8.38590 9.00152 9.58957 11.09874 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.031841 B = 0.009178 C = 0.008297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.166051 B = 3050.148782 C = 3373.793752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.052 0.948 9 C 0.016 3.984 10 C 0.116 3.884 11 H 0.087 0.913 12 C 0.051 3.949 13 O -0.312 6.312 14 C 0.060 3.940 15 C -0.113 4.113 16 C -0.155 4.155 17 C -0.111 4.111 18 C -0.169 4.169 19 C 0.166 3.834 20 N -0.731 5.731 21 H 0.260 0.740 22 H 0.024 0.976 23 H 0.026 0.974 24 H 0.051 0.949 25 H 0.108 0.892 26 H 0.122 0.878 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.678 -9.777 -4.325 11.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.551 4.551 8 H 0.070 0.930 9 C -0.022 4.022 10 C 0.011 3.989 11 H 0.105 0.895 12 C -0.025 4.025 13 O -0.226 6.226 14 C 0.012 3.988 15 C -0.132 4.132 16 C -0.175 4.175 17 C -0.130 4.130 18 C -0.192 4.192 19 C 0.062 3.938 20 N -0.361 5.361 21 H 0.070 0.930 22 H 0.043 0.957 23 H 0.045 0.955 24 H 0.069 0.931 25 H 0.126 0.874 26 H 0.140 0.860 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.136 0.864 30 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 4.227 -9.707 -4.079 11.346 hybrid contribution 0.987 1.393 0.066 1.708 sum 5.214 -8.314 -4.013 10.603 Atomic orbital electron populations 1.69964 1.06000 1.26579 1.50550 1.24994 0.94823 0.99159 0.95419 0.86613 0.79726 0.83676 0.78051 1.20751 1.21222 1.20022 1.21027 0.92623 0.90697 1.50736 0.92966 1.19452 0.93609 0.90975 0.98163 1.22106 0.95264 0.95477 0.86062 0.89545 1.23301 0.94365 0.97378 0.87476 1.85973 1.38067 1.86278 1.12233 1.18425 0.94888 0.99732 0.85799 1.20279 1.00784 1.01853 0.90312 1.20544 0.97470 1.03426 0.96103 1.20703 0.96013 0.98907 0.97399 1.20414 1.02741 1.05483 0.90601 1.17912 0.93694 0.93975 0.88180 1.44720 1.15848 1.69336 1.06215 0.92980 0.95744 0.95529 0.93052 0.87439 0.85974 0.86512 0.86713 0.86445 0.76533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -14.21 8.85 -34.44 -0.30 -14.51 16 8 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 9 C 0.02 0.41 4.39 -27.88 -0.12 0.28 16 10 C 0.12 2.31 3.27 -67.24 -0.22 2.09 16 11 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 12 C 0.05 0.90 6.63 37.43 0.25 1.15 16 13 O -0.31 -6.29 9.82 -19.56 -0.19 -6.48 16 14 C 0.06 1.19 6.10 -39.06 -0.24 0.95 16 15 C -0.11 -1.96 9.97 -39.42 -0.39 -2.35 16 16 C -0.16 -2.39 10.03 -39.57 -0.40 -2.78 16 17 C -0.11 -1.72 10.05 -39.56 -0.40 -2.12 16 18 C -0.17 -2.92 9.93 -39.44 -0.39 -3.31 16 19 C 0.17 3.23 6.24 -83.44 -0.52 2.71 16 20 N -0.73 -13.92 5.31 -51.22 -0.27 -14.19 16 21 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 22 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.03 0.77 7.29 -51.93 -0.38 0.40 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.11 1.69 8.14 -51.93 -0.42 1.26 16 26 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 27 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 28 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 29 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 30 H 0.40 6.81 8.91 -40.82 -0.36 6.45 16 LS Contribution 257.26 15.07 3.88 3.88 Total: -1.00 -31.59 257.26 -7.37 -38.96 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -3.67 Total: 3.77 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -2.83 Total: -16.33 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.46 Total: -40.53 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.19 Total: -6.48 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.59 -7.37 -38.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213111970.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.151 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds