Wall clock time and date at job start Mon Mar 30 2020 03:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38258 * 119.96975 * 2 1 4 4 C 1.38238 * 120.29527 * 179.89516 * 3 2 1 5 5 C 1.38658 * 120.05583 * 359.96405 * 4 3 2 6 6 C 1.39232 * 119.54731 * 0.22709 * 5 4 3 7 7 C 1.38275 * 119.96952 * 179.97438 * 2 1 3 8 8 N 1.40392 * 119.75349 * 179.71476 * 6 5 4 9 9 C 1.47295 * 117.69291 * 13.71742 * 8 6 5 10 10 H 1.09005 * 109.88500 * 198.46035 * 9 8 6 11 11 C 1.50702 * 109.83491 * 77.54136 * 9 8 6 12 12 H 1.07999 * 119.99701 * 241.85868 * 11 9 8 13 13 C 1.37868 * 120.00343 * 61.86402 * 11 9 8 14 14 N 1.31518 * 120.00106 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 120.00027 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47183 * 359.97438 * 15 13 11 17 17 H 1.48507 * 109.47285 * 119.99624 * 15 13 11 18 18 H 1.48497 * 109.47198 * 239.99790 * 15 13 11 19 19 C 1.53526 * 107.58634 * 318.01427 * 9 8 6 20 20 O 1.35937 * 119.65692 * 180.21852 * 5 4 3 21 21 H 1.08999 * 109.47157 * 270.01946 * 1 2 3 22 22 H 1.08993 * 109.47607 * 30.02408 * 1 2 3 23 23 H 1.09009 * 109.47091 * 150.02306 * 1 2 3 24 24 H 1.08001 * 119.85152 * 359.88147 * 3 2 1 25 25 H 1.08002 * 119.97407 * 179.97438 * 4 3 2 26 26 H 1.07996 * 120.06940 * 0.04631 * 7 2 1 27 27 H 0.97000 * 121.14950 * 193.69213 * 8 6 5 28 28 H 0.97005 * 120.00002 * 179.97438 * 14 13 11 29 29 H 1.09000 * 109.58450 * 298.41114 * 19 9 8 30 30 H 1.08998 * 109.69607 * 178.06455 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1977 0.0000 4 6 3.5800 1.2056 0.0022 5 6 4.2813 0.0094 0.0051 6 6 3.5836 -1.1955 0.0011 7 6 2.1977 -1.1979 0.0005 8 7 4.2893 -2.4092 -0.0020 9 6 5.7285 -2.3650 0.3084 10 1 6.2109 -3.2788 -0.0386 11 6 5.9267 -2.2152 1.7948 12 1 6.4274 -1.3426 2.1876 13 6 5.4689 -3.1921 2.6532 14 7 4.8588 -4.2545 2.1750 15 14 5.7139 -3.0060 4.4957 16 1 6.4222 -1.7310 4.7746 17 1 4.3920 -2.9968 5.1725 18 1 6.5227 -4.1426 5.0048 19 6 6.3234 -1.1524 -0.4214 20 8 5.6405 0.0266 0.0118 21 1 -0.3633 0.0003 1.0277 22 1 -0.3634 0.8897 -0.5142 23 1 -0.3634 -0.8903 -0.5135 24 1 1.6547 2.1313 -0.0019 25 1 4.1143 2.1442 0.0018 26 1 1.6584 -2.1335 0.0002 27 1 3.8444 -3.2478 -0.2013 28 1 4.5370 -4.9420 2.7790 29 1 6.1954 -1.2743 -1.4970 30 1 7.3845 -1.0668 -0.1871 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213112739.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:46 Heat of formation + Delta-G solvation = -16.742960 kcal Electronic energy + Delta-G solvation = -14823.587321 eV Core-core repulsion = 12390.537999 eV Total energy + Delta-G solvation = -2433.049322 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.63299 -36.89562 -34.55873 -32.36087 -31.38966 -29.65211 -27.15030 -25.77432 -24.67111 -22.08483 -21.60435 -18.94497 -16.97905 -16.50001 -16.35305 -14.95997 -14.68891 -14.15275 -13.66592 -13.32846 -13.14327 -13.11722 -12.79539 -12.51017 -11.73145 -11.66028 -11.12701 -11.07612 -10.91587 -10.66442 -10.38748 -10.25999 -9.65247 -9.32657 -8.80679 -8.63825 -7.43635 -6.32678 -5.99806 -4.26860 2.21928 2.43787 3.22614 3.31719 3.37442 4.23563 4.35603 4.60117 4.76815 5.30676 5.52218 5.54714 5.77747 5.97435 5.99806 6.05560 6.11680 6.15137 6.23901 6.34638 6.47381 6.77859 6.99488 7.05048 7.20924 7.38569 7.61478 7.75014 8.02814 8.26308 8.56168 8.87215 9.03267 9.43822 10.88365 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.028281 B = 0.010837 C = 0.009541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.833624 B = 2583.092485 C = 2933.926457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.082 4.082 3 C -0.170 4.170 4 C -0.114 4.114 5 C 0.055 3.945 6 C 0.186 3.814 7 C -0.185 4.185 8 N -0.716 5.716 9 C 0.234 3.766 10 H 0.058 0.942 11 C -0.526 4.526 12 H 0.064 0.936 13 C 0.076 3.924 14 N -0.882 5.882 15 Si 0.896 3.104 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.056 3.944 20 O -0.315 6.315 21 H 0.061 0.939 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.110 0.890 25 H 0.116 0.884 26 H 0.111 0.889 27 H 0.393 0.607 28 H 0.262 0.738 29 H 0.038 0.962 30 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.899 5.164 -4.844 8.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.083 4.083 3 C -0.191 4.191 4 C -0.134 4.134 5 C 0.006 3.994 6 C 0.078 3.922 7 C -0.208 4.208 8 N -0.342 5.342 9 C 0.131 3.869 10 H 0.076 0.924 11 C -0.565 4.565 12 H 0.082 0.918 13 C -0.128 4.128 14 N -0.520 5.520 15 Si 0.724 3.276 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.020 4.020 20 O -0.229 6.229 21 H 0.079 0.921 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.128 0.872 25 H 0.134 0.866 26 H 0.129 0.871 27 H 0.228 0.772 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.606 5.104 -4.710 7.825 hybrid contribution -0.174 -0.679 1.093 1.298 sum -3.780 4.425 -3.616 6.852 Atomic orbital electron populations 1.20648 0.92347 1.01568 1.01421 1.19391 0.94860 0.92794 1.01288 1.20240 0.92835 0.96654 1.09374 1.20152 0.93480 0.95362 1.04374 1.18341 0.82697 0.92346 1.05980 1.18003 0.91211 0.87342 0.95641 1.20216 0.91806 0.97379 1.11438 1.45730 1.10008 1.04136 1.74324 1.19515 0.78871 0.93608 0.94881 0.92392 1.21415 1.38231 1.06086 0.90748 0.91782 1.24976 0.93955 0.94677 0.99211 1.69901 1.37775 1.09088 1.35200 0.86470 0.77997 0.78231 0.84944 1.19481 1.20907 1.20905 1.23232 0.96392 0.86305 0.96087 1.85867 1.15639 1.38617 1.82754 0.92056 0.92369 0.92384 0.87175 0.86595 0.87064 0.77198 0.92850 0.94385 0.88394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.44 10.01 36.01 0.36 -1.08 16 2 C -0.08 -1.49 5.88 -104.60 -0.62 -2.10 16 3 C -0.17 -3.03 9.68 -39.57 -0.38 -3.42 16 4 C -0.11 -2.24 9.97 -39.43 -0.39 -2.63 16 5 C 0.06 1.25 6.44 -39.06 -0.25 0.99 16 6 C 0.19 4.23 6.35 -83.44 -0.53 3.70 16 7 C -0.18 -3.77 9.59 -39.44 -0.38 -4.15 16 8 N -0.72 -16.74 5.03 -52.31 -0.26 -17.00 16 9 C 0.23 5.63 3.17 -68.37 -0.22 5.41 16 10 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 11 C -0.53 -14.23 8.21 -34.44 -0.28 -14.52 16 12 H 0.06 1.79 7.74 -52.49 -0.41 1.38 16 13 C 0.08 2.08 5.40 -17.82 -0.10 1.98 16 14 N -0.88 -24.30 12.87 55.43 0.71 -23.59 16 15 Si 0.90 21.48 29.54 -169.99 -5.02 16.45 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 C 0.06 1.19 6.58 37.43 0.25 1.43 16 20 O -0.31 -7.21 9.99 -19.54 -0.20 -7.40 16 21 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 22 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 23 H 0.06 0.75 8.09 -51.92 -0.42 0.33 16 24 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 25 H 0.12 2.03 8.06 -52.49 -0.42 1.60 16 26 H 0.11 2.15 8.06 -52.49 -0.42 1.73 16 27 H 0.39 9.00 8.91 -40.82 -0.36 8.63 16 28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 LS Contribution 257.90 15.07 3.89 3.89 Total: -1.00 -28.77 257.90 -7.12 -35.90 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -3.70 Total: 6.13 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -2.54 Total: -14.38 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.45 Total: -40.59 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.20 Total: -7.40 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.77 -7.12 -35.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213112739.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.153 kcal (2) G-P(sol) polarization free energy of solvation -28.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds