Wall clock time and date at job start Mon Mar 30 2020 03:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38258 * 119.96975 * 2 1 4 4 C 1.38238 * 120.29527 * 179.89516 * 3 2 1 5 5 C 1.38658 * 120.05583 * 359.96405 * 4 3 2 6 6 C 1.39232 * 119.54731 * 0.22709 * 5 4 3 7 7 C 1.38275 * 119.96952 * 179.97438 * 2 1 3 8 8 N 1.40392 * 119.75349 * 179.71476 * 6 5 4 9 9 C 1.47295 * 117.69291 * 13.71742 * 8 6 5 10 10 H 1.09005 * 109.88500 * 198.46035 * 9 8 6 11 11 C 1.50702 * 109.83491 * 77.54136 * 9 8 6 12 12 H 1.07999 * 119.99701 * 241.85868 * 11 9 8 13 13 C 1.37868 * 120.00343 * 61.86402 * 11 9 8 14 14 N 1.31518 * 120.00106 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 120.00027 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47183 * 359.97438 * 15 13 11 17 17 H 1.48507 * 109.47285 * 119.99624 * 15 13 11 18 18 H 1.48497 * 109.47198 * 239.99790 * 15 13 11 19 19 C 1.53526 * 107.58634 * 318.01427 * 9 8 6 20 20 O 1.35937 * 119.65692 * 180.21852 * 5 4 3 21 21 H 1.08999 * 109.47157 * 270.01946 * 1 2 3 22 22 H 1.08993 * 109.47607 * 30.02408 * 1 2 3 23 23 H 1.09009 * 109.47091 * 150.02306 * 1 2 3 24 24 H 1.08001 * 119.85152 * 359.88147 * 3 2 1 25 25 H 1.08002 * 119.97407 * 179.97438 * 4 3 2 26 26 H 1.07996 * 120.06940 * 0.04631 * 7 2 1 27 27 H 0.97000 * 121.14950 * 193.69213 * 8 6 5 28 28 H 0.97005 * 120.00002 * 179.97438 * 14 13 11 29 29 H 1.09000 * 109.58450 * 298.41114 * 19 9 8 30 30 H 1.08998 * 109.69607 * 178.06455 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1977 0.0000 4 6 3.5800 1.2056 0.0022 5 6 4.2813 0.0094 0.0051 6 6 3.5836 -1.1955 0.0011 7 6 2.1977 -1.1979 0.0005 8 7 4.2893 -2.4092 -0.0020 9 6 5.7285 -2.3650 0.3084 10 1 6.2109 -3.2788 -0.0386 11 6 5.9267 -2.2152 1.7948 12 1 6.4274 -1.3426 2.1876 13 6 5.4689 -3.1921 2.6532 14 7 4.8588 -4.2545 2.1750 15 14 5.7139 -3.0060 4.4957 16 1 6.4222 -1.7310 4.7746 17 1 4.3920 -2.9968 5.1725 18 1 6.5227 -4.1426 5.0048 19 6 6.3234 -1.1524 -0.4214 20 8 5.6405 0.0266 0.0118 21 1 -0.3633 0.0003 1.0277 22 1 -0.3634 0.8897 -0.5142 23 1 -0.3634 -0.8903 -0.5135 24 1 1.6547 2.1313 -0.0019 25 1 4.1143 2.1442 0.0018 26 1 1.6584 -2.1335 0.0002 27 1 3.8444 -3.2478 -0.2013 28 1 4.5370 -4.9420 2.7790 29 1 6.1954 -1.2743 -1.4970 30 1 7.3845 -1.0668 -0.1871 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213112739.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:45 Heat of formation + Delta-G solvation = -34.358470 kcal Electronic energy + Delta-G solvation = -14824.351187 eV Core-core repulsion = 12390.537999 eV Total energy + Delta-G solvation = -2433.813188 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.26069 -38.44996 -36.35048 -34.25665 -32.87243 -31.33201 -28.71829 -27.51457 -26.35839 -23.77902 -23.15395 -20.64309 -18.65216 -18.38881 -18.00904 -16.65975 -16.62250 -15.85954 -15.16624 -14.92128 -14.66272 -14.60845 -14.50793 -14.06426 -13.31684 -13.02625 -12.93237 -12.85885 -12.61970 -12.20109 -12.17662 -11.96033 -11.32196 -11.08689 -10.71285 -10.49296 -9.01239 -8.30504 -7.76028 -6.37110 0.66696 0.89825 1.31996 1.35918 1.46640 2.34149 2.59836 2.93215 3.12103 3.34435 4.03783 4.22246 4.32889 4.40460 4.52096 4.61802 4.67108 4.80526 4.86090 4.96035 5.14640 5.17833 5.37573 5.49043 5.62151 5.65904 5.90911 6.05044 6.16204 6.50874 6.69271 6.99544 7.25215 7.37478 8.82099 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.028281 B = 0.010837 C = 0.009541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.833624 B = 2583.092485 C = 2933.926457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.081 4.081 3 C -0.162 4.162 4 C -0.117 4.117 5 C 0.019 3.981 6 C 0.156 3.844 7 C -0.197 4.197 8 N -0.724 5.724 9 C 0.231 3.769 10 H 0.046 0.954 11 C -0.540 4.540 12 H 0.048 0.952 13 C 0.033 3.967 14 N -0.902 5.902 15 Si 0.950 3.050 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.272 1.272 19 C 0.060 3.940 20 O -0.329 6.329 21 H 0.071 0.929 22 H 0.084 0.916 23 H 0.065 0.935 24 H 0.150 0.850 25 H 0.136 0.864 26 H 0.114 0.886 27 H 0.390 0.610 28 H 0.263 0.737 29 H 0.055 0.945 30 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.289 6.638 -4.750 9.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.081 4.081 3 C -0.182 4.182 4 C -0.136 4.136 5 C -0.029 4.029 6 C 0.050 3.950 7 C -0.221 4.221 8 N -0.352 5.352 9 C 0.128 3.872 10 H 0.064 0.936 11 C -0.579 4.579 12 H 0.066 0.934 13 C -0.169 4.169 14 N -0.540 5.540 15 Si 0.776 3.224 16 H -0.197 1.197 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.016 4.016 20 O -0.244 6.244 21 H 0.089 0.911 22 H 0.103 0.897 23 H 0.084 0.916 24 H 0.167 0.833 25 H 0.153 0.847 26 H 0.132 0.868 27 H 0.224 0.776 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.007 6.598 -4.623 9.486 hybrid contribution 0.161 -1.056 1.024 1.480 sum -4.846 5.542 -3.599 8.195 Atomic orbital electron populations 1.20720 0.89071 1.03402 1.02557 1.19913 0.97262 0.91909 0.99056 1.20738 0.92247 0.98217 1.06966 1.20558 0.94535 0.95215 1.03306 1.18773 0.82657 0.93382 1.08093 1.18330 0.92269 0.87098 0.97339 1.20477 0.91184 0.98784 1.11615 1.45454 1.09689 1.04465 1.75556 1.19383 0.79709 0.94347 0.93776 0.93645 1.21601 1.38185 1.05455 0.92640 0.93409 1.25619 0.94007 0.94632 1.02675 1.69979 1.38427 1.09484 1.36129 0.85633 0.77680 0.78252 0.80813 1.19710 1.21169 1.19751 1.23244 0.96854 0.84823 0.96656 1.85817 1.16268 1.38962 1.83364 0.91079 0.89676 0.91562 0.83267 0.84655 0.86809 0.77589 0.92832 0.92717 0.86878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.42 10.01 71.24 0.71 -1.70 16 2 C -0.08 -2.68 5.88 -19.85 -0.12 -2.80 16 3 C -0.16 -5.19 9.68 22.27 0.22 -4.97 16 4 C -0.12 -4.36 9.97 22.37 0.22 -4.13 16 5 C 0.02 0.87 6.44 22.61 0.15 1.01 16 6 C 0.16 7.11 6.35 38.09 0.24 7.35 16 7 C -0.20 -7.89 9.59 22.36 0.21 -7.67 16 8 N -0.72 -34.67 5.03 -319.41 -1.61 -36.27 16 9 C 0.23 11.40 3.17 44.27 0.14 11.54 16 10 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 11 C -0.54 -29.78 8.21 25.60 0.21 -29.56 16 12 H 0.05 2.73 7.74 -2.91 -0.02 2.70 16 13 C 0.03 1.80 5.40 84.65 0.46 2.25 16 14 N -0.90 -50.37 12.87 21.44 0.28 -50.10 16 15 Si 0.95 44.36 29.54 68.60 2.03 46.38 16 16 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 17 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 19 C 0.06 2.57 6.58 72.16 0.47 3.04 16 20 O -0.33 -15.12 9.99 -92.84 -0.93 -16.05 16 21 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.08 1.61 8.08 -2.39 -0.02 1.59 16 23 H 0.07 1.49 8.09 -2.38 -0.02 1.47 16 24 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 25 H 0.14 4.40 8.06 -2.91 -0.02 4.37 16 26 H 0.11 4.36 8.06 -2.91 -0.02 4.34 16 27 H 0.39 18.47 8.91 -92.71 -0.83 17.64 16 28 H 0.26 14.03 8.31 -92.70 -0.77 13.26 16 29 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.11 4.33 8.14 -2.39 -0.02 4.31 16 Total: -1.00 -61.48 257.90 3.00 -58.47 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 0.32 Total: 23.20 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: 2.92 Total: -25.65 kcal Atomic # 7 Polarization: -85.04 SS G_CDS: -1.33 Total: -86.37 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.93 Total: -16.05 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -61.48 3.00 -58.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213112739.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.116 kcal (2) G-P(sol) polarization free energy of solvation -61.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds