Wall clock time and date at job start Mon Mar 30 2020 03:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38253 * 119.96967 * 2 1 4 4 C 1.38245 * 120.29403 * 180.02562 * 3 2 1 5 5 C 1.38658 * 120.05401 * 359.92933 * 4 3 2 6 6 C 1.39224 * 119.54966 * 359.94545 * 5 4 3 7 7 C 1.38273 * 119.97000 * 179.71828 * 2 1 3 8 8 N 1.40387 * 119.75380 * 180.24363 * 6 5 4 9 9 C 1.47301 * 117.69388 * 346.21227 * 8 6 5 10 10 H 1.09000 * 109.83325 * 161.51069 * 9 8 6 11 11 C 1.50695 * 109.83396 * 282.46336 * 9 8 6 12 12 H 1.08005 * 119.99971 * 118.14468 * 11 9 8 13 13 C 1.37871 * 120.00588 * 298.13938 * 11 9 8 14 14 N 1.31517 * 119.99900 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00331 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47212 * 90.00077 * 15 13 11 17 17 H 1.48504 * 109.47493 * 210.00334 * 15 13 11 18 18 H 1.48503 * 109.47038 * 330.00105 * 15 13 11 19 19 C 1.53530 * 107.59051 * 41.99039 * 9 8 6 20 20 O 1.35945 * 119.65574 * 179.79913 * 5 4 3 21 21 H 1.09001 * 109.46953 * 89.99946 * 1 2 3 22 22 H 1.09000 * 109.47318 * 209.99544 * 1 2 3 23 23 H 1.09000 * 109.47161 * 330.00175 * 1 2 3 24 24 H 1.08002 * 119.85385 * 0.04323 * 3 2 1 25 25 H 1.08000 * 119.97164 * 179.90805 * 4 3 2 26 26 H 1.08005 * 120.06359 * 0.04590 * 7 2 1 27 27 H 0.96996 * 121.15080 * 166.19493 * 8 6 5 28 28 H 0.97005 * 120.00073 * 179.97438 * 14 13 11 29 29 H 1.09000 * 109.58463 * 182.02081 * 19 9 8 30 30 H 1.08999 * 109.69471 * 61.67801 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1977 1.1977 0.0000 4 6 3.5801 1.2055 -0.0005 5 6 4.2813 0.0093 0.0004 6 6 3.5837 -1.1955 0.0030 7 6 2.1978 -1.1978 0.0059 8 7 4.2893 -2.4092 0.0092 9 6 5.7292 -2.3654 -0.2982 10 1 6.2100 -3.2789 0.0517 11 6 5.9305 -2.2175 -1.7843 12 1 6.4321 -1.3454 -2.1772 13 6 5.4744 -3.1953 -2.6426 14 7 4.8632 -4.2571 -2.1644 15 14 5.7246 -3.0122 -4.4847 16 1 7.0203 -3.6258 -4.8718 17 1 4.6192 -3.6941 -5.2047 18 1 5.7331 -1.5708 -4.8422 19 6 6.3228 -1.1520 0.4313 20 8 5.6407 0.0264 -0.0043 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6548 2.1313 0.0007 25 1 4.1144 2.1441 -0.0020 26 1 1.6583 -2.1335 0.0097 27 1 3.8441 -3.2474 0.2092 28 1 4.5419 -4.9450 -2.7683 29 1 7.3839 -1.0677 0.1967 30 1 6.1949 -1.2715 1.5072 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213112806.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:49 Heat of formation + Delta-G solvation = -16.727306 kcal Electronic energy + Delta-G solvation = -14823.258697 eV Core-core repulsion = 12390.210054 eV Total energy + Delta-G solvation = -2433.048643 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.63177 -36.89490 -34.55763 -32.36073 -31.38905 -29.65128 -27.14994 -25.77309 -24.66915 -22.08396 -21.60388 -18.94297 -16.97797 -16.49916 -16.35276 -14.95975 -14.69048 -14.15174 -13.66516 -13.32359 -13.14539 -13.11619 -12.79198 -12.50850 -11.73213 -11.65947 -11.12565 -11.07587 -10.89981 -10.65876 -10.41396 -10.25522 -9.65923 -9.33060 -8.80781 -8.63007 -7.43639 -6.32525 -5.99679 -4.26776 2.22012 2.43989 3.23386 3.30971 3.37228 4.23642 4.35708 4.60321 4.76881 5.30765 5.52266 5.54773 5.77851 5.97313 5.99871 6.05580 6.11836 6.15174 6.23979 6.34652 6.47509 6.77934 6.99548 7.05064 7.21019 7.38657 7.61593 7.74929 8.02906 8.26394 8.56158 8.86998 9.03368 9.43834 10.88507 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.028295 B = 0.010831 C = 0.009538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.348386 B = 2584.573987 C = 2934.864971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.082 4.082 3 C -0.171 4.171 4 C -0.114 4.114 5 C 0.055 3.945 6 C 0.187 3.813 7 C -0.185 4.185 8 N -0.716 5.716 9 C 0.234 3.766 10 H 0.058 0.942 11 C -0.527 4.527 12 H 0.063 0.937 13 C 0.077 3.923 14 N -0.882 5.882 15 Si 0.896 3.104 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.272 1.272 19 C 0.056 3.944 20 O -0.315 6.315 21 H 0.061 0.939 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.110 0.890 25 H 0.116 0.884 26 H 0.111 0.889 27 H 0.393 0.607 28 H 0.263 0.737 29 H 0.098 0.902 30 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.917 5.155 4.827 8.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.083 4.083 3 C -0.191 4.191 4 C -0.134 4.134 5 C 0.006 3.994 6 C 0.078 3.922 7 C -0.209 4.209 8 N -0.342 5.342 9 C 0.132 3.868 10 H 0.076 0.924 11 C -0.566 4.566 12 H 0.082 0.918 13 C -0.128 4.128 14 N -0.520 5.520 15 Si 0.724 3.276 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.196 1.196 19 C -0.020 4.020 20 O -0.229 6.229 21 H 0.079 0.921 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.128 0.872 25 H 0.134 0.866 26 H 0.129 0.871 27 H 0.228 0.772 28 H 0.072 0.928 29 H 0.116 0.884 30 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.629 5.092 4.693 7.818 hybrid contribution -0.155 -0.674 -1.095 1.295 sum -3.784 4.418 3.598 6.840 Atomic orbital electron populations 1.20649 0.92345 1.01567 1.01421 1.19390 0.94858 0.92793 1.01272 1.20240 0.92833 0.96657 1.09393 1.20154 0.93481 0.95359 1.04359 1.18340 0.82697 0.92345 1.05997 1.17999 0.91208 0.87340 0.95614 1.20215 0.91803 0.97376 1.11481 1.45733 1.09960 1.04161 1.74342 1.19509 0.78850 0.93588 0.94876 0.92410 1.21372 1.38307 1.06094 0.90782 0.91841 1.24973 0.93937 0.94680 0.99201 1.69891 1.37677 1.09073 1.35320 0.86522 0.77718 0.78581 0.84805 1.20480 1.21170 1.19628 1.23232 0.96415 0.86327 0.96060 1.85867 1.15653 1.38656 1.82704 0.92056 0.92383 0.92370 0.87177 0.86597 0.87064 0.77203 0.92791 0.88411 0.94368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.44 10.01 36.01 0.36 -1.08 16 2 C -0.08 -1.49 5.88 -104.60 -0.62 -2.10 16 3 C -0.17 -3.04 9.68 -39.57 -0.38 -3.42 16 4 C -0.11 -2.24 9.97 -39.42 -0.39 -2.64 16 5 C 0.06 1.24 6.44 -39.06 -0.25 0.99 16 6 C 0.19 4.24 6.35 -83.44 -0.53 3.71 16 7 C -0.18 -3.77 9.59 -39.44 -0.38 -4.15 16 8 N -0.72 -16.74 5.03 -52.31 -0.26 -17.00 16 9 C 0.23 5.64 3.17 -68.37 -0.22 5.43 16 10 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 11 C -0.53 -14.26 8.22 -34.45 -0.28 -14.54 16 12 H 0.06 1.77 7.74 -52.48 -0.41 1.36 16 13 C 0.08 2.09 5.40 -17.82 -0.10 1.99 16 14 N -0.88 -24.31 12.87 55.43 0.71 -23.60 16 15 Si 0.90 21.48 29.54 -169.99 -5.02 16.45 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 C 0.06 1.18 6.58 37.43 0.25 1.43 16 20 O -0.31 -7.21 9.99 -19.57 -0.20 -7.41 16 21 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 22 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 23 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 24 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 25 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 26 H 0.11 2.15 8.06 -52.48 -0.42 1.72 16 27 H 0.39 9.00 8.91 -40.82 -0.36 8.63 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.10 1.87 8.14 -51.93 -0.42 1.44 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 257.90 15.07 3.89 3.89 Total: -1.00 -28.77 257.90 -7.12 -35.89 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -3.70 Total: 6.16 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -2.54 Total: -14.38 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.45 Total: -40.60 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.20 Total: -7.41 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.77 -7.12 -35.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213112806.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.162 kcal (2) G-P(sol) polarization free energy of solvation -28.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds