Wall clock time and date at job start Mon Mar 30 2020 03:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38253 * 119.96967 * 2 1 4 4 C 1.38245 * 120.29403 * 180.02562 * 3 2 1 5 5 C 1.38658 * 120.05401 * 359.92933 * 4 3 2 6 6 C 1.39224 * 119.54966 * 359.94545 * 5 4 3 7 7 C 1.38273 * 119.97000 * 179.71828 * 2 1 3 8 8 N 1.40387 * 119.75380 * 180.24363 * 6 5 4 9 9 C 1.47301 * 117.69388 * 346.21227 * 8 6 5 10 10 H 1.09000 * 109.83325 * 161.51069 * 9 8 6 11 11 C 1.50695 * 109.83396 * 282.46336 * 9 8 6 12 12 H 1.08005 * 119.99971 * 118.14468 * 11 9 8 13 13 C 1.37871 * 120.00588 * 298.13938 * 11 9 8 14 14 N 1.31517 * 119.99900 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00331 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47212 * 90.00077 * 15 13 11 17 17 H 1.48504 * 109.47493 * 210.00334 * 15 13 11 18 18 H 1.48503 * 109.47038 * 330.00105 * 15 13 11 19 19 C 1.53530 * 107.59051 * 41.99039 * 9 8 6 20 20 O 1.35945 * 119.65574 * 179.79913 * 5 4 3 21 21 H 1.09001 * 109.46953 * 89.99946 * 1 2 3 22 22 H 1.09000 * 109.47318 * 209.99544 * 1 2 3 23 23 H 1.09000 * 109.47161 * 330.00175 * 1 2 3 24 24 H 1.08002 * 119.85385 * 0.04323 * 3 2 1 25 25 H 1.08000 * 119.97164 * 179.90805 * 4 3 2 26 26 H 1.08005 * 120.06359 * 0.04590 * 7 2 1 27 27 H 0.96996 * 121.15080 * 166.19493 * 8 6 5 28 28 H 0.97005 * 120.00073 * 179.97438 * 14 13 11 29 29 H 1.09000 * 109.58463 * 182.02081 * 19 9 8 30 30 H 1.08999 * 109.69471 * 61.67801 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1977 1.1977 0.0000 4 6 3.5801 1.2055 -0.0005 5 6 4.2813 0.0093 0.0004 6 6 3.5837 -1.1955 0.0030 7 6 2.1978 -1.1978 0.0059 8 7 4.2893 -2.4092 0.0092 9 6 5.7292 -2.3654 -0.2982 10 1 6.2100 -3.2789 0.0517 11 6 5.9305 -2.2175 -1.7843 12 1 6.4321 -1.3454 -2.1772 13 6 5.4744 -3.1953 -2.6426 14 7 4.8632 -4.2571 -2.1644 15 14 5.7246 -3.0122 -4.4847 16 1 7.0203 -3.6258 -4.8718 17 1 4.6192 -3.6941 -5.2047 18 1 5.7331 -1.5708 -4.8422 19 6 6.3228 -1.1520 0.4313 20 8 5.6407 0.0264 -0.0043 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6548 2.1313 0.0007 25 1 4.1144 2.1441 -0.0020 26 1 1.6583 -2.1335 0.0097 27 1 3.8441 -3.2474 0.2092 28 1 4.5419 -4.9450 -2.7683 29 1 7.3839 -1.0677 0.1967 30 1 6.1949 -1.2715 1.5072 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213112806.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:49 Heat of formation + Delta-G solvation = -34.340754 kcal Electronic energy + Delta-G solvation = -14824.022473 eV Core-core repulsion = 12390.210054 eV Total energy + Delta-G solvation = -2433.812419 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.26037 -38.45008 -36.35001 -34.25675 -32.87249 -31.33197 -28.71805 -27.51310 -26.35720 -23.77864 -23.15450 -20.64163 -18.65166 -18.38759 -18.00959 -16.66132 -16.62353 -15.85938 -15.16489 -14.91686 -14.66244 -14.60592 -14.50986 -14.06212 -13.32179 -13.02689 -12.91351 -12.84581 -12.62506 -12.22119 -12.17938 -11.96264 -11.32942 -11.08791 -10.70175 -10.49382 -9.01299 -8.30362 -7.75973 -6.37054 0.66680 0.89918 1.33210 1.35904 1.45557 2.34208 2.59926 2.93308 3.12148 3.34490 4.03804 4.22224 4.32675 4.40636 4.52121 4.61868 4.67139 4.80539 4.86039 4.96118 5.14601 5.17924 5.37559 5.49009 5.62067 5.65779 5.90923 6.05098 6.16238 6.50811 6.69111 6.99477 7.25307 7.37500 8.82070 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.028295 B = 0.010831 C = 0.009538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.348386 B = 2584.573987 C = 2934.864971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.080 4.080 3 C -0.162 4.162 4 C -0.117 4.117 5 C 0.019 3.981 6 C 0.156 3.844 7 C -0.197 4.197 8 N -0.724 5.724 9 C 0.232 3.768 10 H 0.046 0.954 11 C -0.541 4.541 12 H 0.048 0.952 13 C 0.033 3.967 14 N -0.902 5.902 15 Si 0.950 3.050 16 H -0.267 1.267 17 H -0.284 1.284 18 H -0.279 1.279 19 C 0.060 3.940 20 O -0.330 6.330 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.084 0.916 24 H 0.150 0.850 25 H 0.135 0.865 26 H 0.114 0.886 27 H 0.390 0.610 28 H 0.263 0.737 29 H 0.113 0.887 30 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.301 6.603 4.725 9.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.081 4.081 3 C -0.182 4.182 4 C -0.136 4.136 5 C -0.029 4.029 6 C 0.050 3.950 7 C -0.221 4.221 8 N -0.352 5.352 9 C 0.128 3.872 10 H 0.063 0.937 11 C -0.580 4.580 12 H 0.066 0.934 13 C -0.169 4.169 14 N -0.540 5.540 15 Si 0.776 3.224 16 H -0.193 1.193 17 H -0.209 1.209 18 H -0.204 1.204 19 C -0.016 4.016 20 O -0.244 6.244 21 H 0.089 0.911 22 H 0.084 0.916 23 H 0.103 0.897 24 H 0.167 0.833 25 H 0.153 0.847 26 H 0.132 0.868 27 H 0.224 0.776 28 H 0.072 0.928 29 H 0.131 0.869 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.025 6.560 4.597 9.456 hybrid contribution 0.180 -1.041 -1.022 1.470 sum -4.845 5.518 3.575 8.167 Atomic orbital electron populations 1.20722 0.89057 1.03401 1.02567 1.19914 0.97269 0.91904 0.99033 1.20739 0.92240 0.98227 1.06991 1.20560 0.94543 0.95212 1.03311 1.18773 0.82659 0.93387 1.08117 1.18328 0.92275 0.87094 0.97315 1.20477 0.91172 0.98788 1.11633 1.45457 1.09640 1.04490 1.75575 1.19377 0.79687 0.94328 0.93773 0.93660 1.21569 1.38275 1.05483 0.92674 0.93422 1.25618 0.93984 0.94625 1.02675 1.69972 1.38337 1.09461 1.36221 0.85685 0.78082 0.77925 0.80690 1.19251 1.20927 1.20387 1.23244 0.96877 0.84839 0.96635 1.85817 1.16284 1.39010 1.83316 0.91064 0.91553 0.89685 0.83273 0.84674 0.86779 0.77586 0.92820 0.86894 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.41 10.01 71.24 0.71 -1.70 16 2 C -0.08 -2.68 5.88 -19.85 -0.12 -2.79 16 3 C -0.16 -5.21 9.68 22.27 0.22 -4.99 16 4 C -0.12 -4.37 9.97 22.37 0.22 -4.15 16 5 C 0.02 0.85 6.44 22.61 0.15 1.00 16 6 C 0.16 7.13 6.35 38.09 0.24 7.37 16 7 C -0.20 -7.89 9.59 22.36 0.21 -7.67 16 8 N -0.72 -34.67 5.03 -319.41 -1.61 -36.28 16 9 C 0.23 11.43 3.17 44.27 0.14 11.57 16 10 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 11 C -0.54 -29.85 8.22 25.60 0.21 -29.64 16 12 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 13 C 0.03 1.82 5.40 84.65 0.46 2.27 16 14 N -0.90 -50.37 12.87 21.45 0.28 -50.10 16 15 Si 0.95 44.34 29.54 68.60 2.03 46.37 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 18 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 19 C 0.06 2.56 6.58 72.16 0.47 3.04 16 20 O -0.33 -15.15 9.99 -92.93 -0.93 -16.08 16 21 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.07 1.49 8.08 -2.39 -0.02 1.47 16 23 H 0.08 1.61 8.08 -2.39 -0.02 1.59 16 24 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 25 H 0.14 4.41 8.06 -2.91 -0.02 4.38 16 26 H 0.11 4.37 8.06 -2.91 -0.02 4.34 16 27 H 0.39 18.47 8.91 -92.71 -0.83 17.64 16 28 H 0.26 14.07 8.31 -92.70 -0.77 13.30 16 29 H 0.11 4.32 8.14 -2.39 -0.02 4.31 16 30 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -61.48 257.90 3.00 -58.48 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.32 Total: 23.31 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 2.92 Total: -25.70 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -1.33 Total: -86.38 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.93 Total: -16.08 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -61.48 3.00 -58.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213112806.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.141 kcal (2) G-P(sol) polarization free energy of solvation -61.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds