Wall clock time and date at job start Mon Mar 30 2020 03:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38288 * 119.97005 * 2 1 4 4 C 1.38217 * 120.29286 * 180.02562 * 3 2 1 5 5 C 1.38324 * 120.05999 * 0.05971 * 4 3 2 6 6 C 1.38542 * 119.87360 * 359.97438 * 5 4 3 7 7 C 1.38619 * 119.97188 * 179.97438 * 2 1 3 8 8 O 1.35935 * 119.66380 * 359.62753 * 7 2 1 9 9 C 1.42964 * 117.74853 * 159.93761 * 8 7 2 10 10 C 1.53530 * 108.80342 * 49.44046 * 9 8 7 11 11 H 1.09000 * 109.88989 * 182.26234 * 10 9 8 12 12 C 1.50702 * 109.83386 * 61.34158 * 10 9 8 13 13 H 1.08002 * 120.00299 * 1.86073 * 12 10 9 14 14 C 1.37884 * 119.99942 * 181.57631 * 12 10 9 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 10 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 10 17 17 H 1.48504 * 109.47196 * 60.00645 * 16 14 12 18 18 H 1.48504 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47679 * 300.00280 * 16 14 12 20 20 N 1.40385 * 120.08675 * 179.84151 * 6 5 4 21 21 H 1.08995 * 109.47229 * 90.00303 * 1 2 3 22 22 H 1.09003 * 109.46687 * 209.99566 * 1 2 3 23 23 H 1.08999 * 109.47143 * 329.99462 * 1 2 3 24 24 H 1.07993 * 119.85618 * 359.97438 * 3 2 1 25 25 H 1.07991 * 119.96816 * 180.02562 * 4 3 2 26 26 H 1.07999 * 120.06488 * 179.97438 * 5 4 3 27 27 H 1.08996 * 109.57858 * 289.64245 * 9 8 7 28 28 H 1.08993 * 109.57759 * 169.23548 * 9 8 7 29 29 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 30 30 H 0.96998 * 121.15283 * 346.21296 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5800 1.2058 -0.0005 5 6 4.2796 0.0125 -0.0023 6 6 3.5923 -1.1904 -0.0030 7 6 2.1995 -1.2008 0.0005 8 8 1.5124 -2.3737 0.0087 9 6 2.1989 -3.5504 -0.4248 10 6 3.5477 -3.6332 0.3039 11 1 4.1041 -4.5037 -0.0435 12 6 3.3206 -3.7317 1.7904 13 1 2.3146 -3.7658 2.1820 14 6 4.3971 -3.7843 2.6504 15 7 5.6221 -3.7429 2.1736 16 14 4.1156 -3.9142 4.4924 17 1 3.3571 -5.1556 4.7909 18 1 5.4251 -3.9535 5.1917 19 1 3.3408 -2.7364 4.9591 20 7 4.2978 -2.4041 -0.0082 21 1 -0.3633 -0.0001 -1.0276 22 1 -0.3633 -0.8901 0.5138 23 1 -0.3633 0.8899 0.5139 24 1 1.6550 2.1316 -0.0004 25 1 4.1141 2.1443 -0.0001 26 1 5.3596 0.0185 -0.0032 27 1 2.3673 -3.4996 -1.5005 28 1 1.6010 -4.4303 -0.1878 29 1 6.3795 -3.7795 2.7786 30 1 5.2463 -2.4323 -0.2091 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213113485.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:53 Heat of formation + Delta-G solvation = -15.418121 kcal Electronic energy + Delta-G solvation = -14969.880243 eV Core-core repulsion = 12536.888371 eV Total energy + Delta-G solvation = -2432.991872 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.67891 -36.64405 -34.74626 -32.49420 -30.97335 -29.89367 -26.43670 -26.06785 -25.03368 -22.47295 -20.68408 -19.31612 -16.91118 -16.60908 -16.13560 -15.00028 -14.71411 -14.20575 -13.91081 -13.34434 -13.11834 -12.77539 -12.64277 -12.30979 -11.77188 -11.49700 -11.16514 -11.01356 -10.91867 -10.63407 -10.39877 -10.28016 -9.74908 -9.34711 -8.72073 -8.60099 -7.39310 -6.32689 -5.98769 -4.26124 2.22340 2.47136 3.26186 3.30404 3.35394 4.24145 4.36035 4.61395 4.79015 5.30787 5.55182 5.62279 5.95121 5.98503 6.05502 6.08008 6.15162 6.21721 6.30969 6.37139 6.50463 6.83334 7.05713 7.09579 7.22381 7.37798 7.63509 7.75082 8.03055 8.27224 8.56093 8.87394 9.04935 9.44322 10.89220 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.029738 B = 0.010914 C = 0.010455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.337139 B = 2564.966886 C = 2677.441736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.087 4.087 3 C -0.173 4.173 4 C -0.108 4.108 5 C -0.191 4.191 6 C 0.186 3.814 7 C 0.060 3.940 8 O -0.311 6.311 9 C 0.056 3.944 10 C 0.235 3.765 11 H 0.057 0.943 12 C -0.528 4.528 13 H 0.063 0.937 14 C 0.077 3.923 15 N -0.882 5.882 16 Si 0.896 3.104 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.275 1.275 20 N -0.715 5.715 21 H 0.058 0.942 22 H 0.066 0.934 23 H 0.055 0.945 24 H 0.110 0.890 25 H 0.108 0.892 26 H 0.111 0.889 27 H 0.038 0.962 28 H 0.098 0.902 29 H 0.263 0.737 30 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.342 4.754 -4.846 8.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.089 4.089 3 C -0.194 4.194 4 C -0.127 4.127 5 C -0.215 4.215 6 C 0.078 3.922 7 C 0.011 3.989 8 O -0.225 6.225 9 C -0.020 4.020 10 C 0.132 3.868 11 H 0.074 0.926 12 C -0.567 4.567 13 H 0.081 0.919 14 C -0.127 4.127 15 N -0.519 5.519 16 Si 0.724 3.276 17 H -0.200 1.200 18 H -0.213 1.213 19 H -0.200 1.200 20 N -0.341 5.341 21 H 0.077 0.923 22 H 0.085 0.915 23 H 0.074 0.926 24 H 0.128 0.872 25 H 0.126 0.874 26 H 0.129 0.871 27 H 0.056 0.944 28 H 0.116 0.884 29 H 0.072 0.928 30 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -4.430 4.470 -4.708 7.860 hybrid contribution 0.791 -0.115 1.084 1.347 sum -3.639 4.355 -3.624 6.733 Atomic orbital electron populations 1.20509 0.91758 1.01958 1.01201 1.19016 0.95382 0.90471 1.04003 1.20288 0.93826 0.95831 1.09431 1.20582 0.93909 0.96632 1.01580 1.20352 0.98846 0.91073 1.11249 1.18003 0.90576 0.87988 0.95641 1.18108 0.88626 0.85872 1.06280 1.85845 1.39726 1.14247 1.82674 1.23228 0.96620 0.86121 0.96074 1.19504 0.87704 0.84756 0.94824 0.92564 1.21329 0.93215 1.51385 0.90725 0.91917 1.24966 0.94995 0.93618 0.99165 1.69879 0.97908 1.48769 1.35371 0.86583 0.77384 0.78877 0.84766 1.20027 1.21268 1.20026 1.45700 1.10557 1.03607 1.74239 0.92336 0.91484 0.92565 0.87219 0.87396 0.87101 0.94398 0.88435 0.92751 0.77160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.58 9.78 36.01 0.35 -1.23 16 2 C -0.09 -1.72 5.89 -104.46 -0.62 -2.33 16 3 C -0.17 -3.11 9.69 -39.57 -0.38 -3.50 16 4 C -0.11 -1.97 10.05 -39.56 -0.40 -2.37 16 5 C -0.19 -3.93 9.93 -39.44 -0.39 -4.32 16 6 C 0.19 4.25 6.35 -83.44 -0.53 3.72 16 7 C 0.06 1.35 6.42 -39.05 -0.25 1.10 16 8 O -0.31 -7.01 9.00 -19.54 -0.18 -7.18 16 9 C 0.06 1.17 6.58 37.43 0.25 1.42 16 10 C 0.23 5.63 3.19 -68.35 -0.22 5.42 16 11 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 12 C -0.53 -14.24 8.23 -34.44 -0.28 -14.52 16 13 H 0.06 1.73 7.75 -52.49 -0.41 1.33 16 14 C 0.08 2.10 5.40 -17.82 -0.10 2.00 16 15 N -0.88 -24.30 12.79 55.43 0.71 -23.59 16 16 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 20 N -0.71 -16.73 4.94 -52.29 -0.26 -16.99 16 21 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.07 1.14 7.50 -51.93 -0.39 0.76 16 23 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 24 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 25 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 26 H 0.11 2.14 8.06 -52.49 -0.42 1.72 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.10 1.85 8.14 -51.93 -0.42 1.42 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.39 9.03 8.91 -40.82 -0.36 8.66 16 LS Contribution 256.37 15.07 3.86 3.86 Total: -1.00 -28.65 256.37 -7.12 -35.77 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -3.67 Total: 6.29 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -2.57 Total: -14.61 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.45 Total: -40.58 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.18 Total: -7.18 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.65 -7.12 -35.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213113485.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.355 kcal (2) G-P(sol) polarization free energy of solvation -28.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds