Wall clock time and date at job start Mon Mar 30 2020 03:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38287 * 119.96830 * 2 1 4 4 C 1.38208 * 120.29520 * 179.97438 * 3 2 1 5 5 C 1.38323 * 120.05832 * 359.93039 * 4 3 2 6 6 C 1.38542 * 119.87190 * 0.06353 * 5 4 3 7 7 C 1.38611 * 119.97658 * 179.97438 * 2 1 3 8 8 O 1.35946 * 119.66410 * 0.21728 * 7 2 1 9 9 C 1.42966 * 117.75134 * 200.14942 * 8 7 2 10 10 C 1.53543 * 108.79113 * 310.55505 * 9 8 7 11 11 H 1.08993 * 109.89050 * 177.75735 * 10 9 8 12 12 C 1.50694 * 109.83447 * 298.69086 * 10 9 8 13 13 H 1.08000 * 120.00609 * 23.51813 * 12 10 9 14 14 C 1.37876 * 119.99740 * 203.52082 * 12 10 9 15 15 N 1.31521 * 120.00179 * 181.75085 * 14 12 10 16 16 Si 1.86803 * 120.00009 * 1.74841 * 14 12 10 17 17 H 1.48497 * 109.47040 * 84.82920 * 16 14 12 18 18 H 1.48500 * 109.47002 * 204.82669 * 16 14 12 19 19 H 1.48503 * 109.46840 * 324.82541 * 16 14 12 20 20 N 1.40385 * 120.08272 * 180.17192 * 6 5 4 21 21 H 1.09003 * 109.46892 * 90.00885 * 1 2 3 22 22 H 1.09007 * 109.46888 * 210.00202 * 1 2 3 23 23 H 1.08995 * 109.47355 * 330.00467 * 1 2 3 24 24 H 1.07999 * 119.85136 * 0.24302 * 3 2 1 25 25 H 1.08003 * 119.97146 * 179.97438 * 4 3 2 26 26 H 1.08001 * 120.06731 * 180.02562 * 5 4 3 27 27 H 1.09001 * 109.58316 * 190.76872 * 9 8 7 28 28 H 1.08997 * 109.69891 * 70.41708 * 9 8 7 29 29 H 0.97000 * 120.00038 * 179.97438 * 15 14 12 30 30 H 0.97004 * 121.14946 * 13.64105 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5799 1.2059 0.0005 5 6 4.2795 0.0126 0.0025 6 6 3.5922 -1.1903 0.0027 7 6 2.1996 -1.2007 0.0005 8 8 1.5125 -2.3737 -0.0034 9 6 2.1995 -3.5491 0.4330 10 6 3.5476 -3.6338 -0.2972 11 1 4.1043 -4.5034 0.0518 12 6 3.3187 -3.7360 -1.7831 13 1 2.3981 -3.3712 -2.2141 14 6 4.2846 -4.2954 -2.5925 15 7 4.0997 -4.3533 -3.8934 16 14 5.8560 -4.9709 -1.8415 17 1 5.6272 -6.3656 -1.3861 18 1 6.9380 -4.9534 -2.8585 19 1 6.2520 -4.1304 -0.6830 20 7 4.2978 -2.4039 0.0083 21 1 -0.3633 -0.0002 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5137 24 1 1.6549 2.1316 0.0040 25 1 4.1141 2.1445 0.0001 26 1 5.3595 0.0186 0.0034 27 1 1.6015 -4.4299 0.1991 28 1 2.3691 -3.4976 1.5084 29 1 4.7795 -4.7465 -4.4628 30 1 5.2467 -2.4317 0.2079 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213113543.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:56 Heat of formation + Delta-G solvation = -11.260803 kcal Electronic energy + Delta-G solvation = -14899.561288 eV Core-core repulsion = 12466.749690 eV Total energy + Delta-G solvation = -2432.811598 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.85747 -36.79458 -34.92861 -32.61329 -31.23555 -30.16854 -26.64835 -26.20501 -25.27169 -22.39180 -20.87279 -19.27758 -17.22749 -16.95161 -16.31755 -15.26400 -14.63611 -14.49545 -13.93911 -13.52630 -13.26261 -12.95847 -12.70924 -12.46828 -11.88793 -11.64154 -11.48198 -11.16926 -11.09863 -10.74557 -10.48875 -10.04218 -9.93734 -9.38947 -8.89172 -8.75904 -7.52239 -6.38390 -6.24788 -4.28726 2.08907 2.31476 3.11683 3.17345 3.22976 4.09895 4.23218 4.39505 4.57540 5.23323 5.40774 5.51346 5.79332 5.86088 5.91701 5.96498 6.01741 6.14087 6.16096 6.21744 6.34641 6.57613 6.75624 6.93334 7.06762 7.23796 7.43415 7.49235 7.99931 8.28426 8.42693 8.68281 8.88955 9.35979 10.87409 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.035676 B = 0.010480 C = 0.009606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.659670 B = 2671.132236 C = 2914.193920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.086 4.086 3 C -0.164 4.164 4 C -0.109 4.109 5 C -0.188 4.188 6 C 0.179 3.821 7 C 0.067 3.933 8 O -0.306 6.306 9 C 0.066 3.934 10 C 0.200 3.800 11 H 0.057 0.943 12 C -0.516 4.516 13 H 0.082 0.918 14 C 0.080 3.920 15 N -0.883 5.883 16 Si 0.883 3.117 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.269 1.269 20 N -0.745 5.745 21 H 0.063 0.937 22 H 0.065 0.935 23 H 0.056 0.944 24 H 0.113 0.887 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.104 0.896 28 H 0.039 0.961 29 H 0.267 0.733 30 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.396 5.614 9.138 10.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.087 4.087 3 C -0.184 4.184 4 C -0.128 4.128 5 C -0.211 4.211 6 C 0.073 3.927 7 C 0.018 3.982 8 O -0.220 6.220 9 C -0.010 4.010 10 C 0.098 3.902 11 H 0.075 0.925 12 C -0.555 4.555 13 H 0.100 0.900 14 C -0.125 4.125 15 N -0.520 5.520 16 Si 0.711 3.289 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.194 1.194 20 N -0.376 5.376 21 H 0.082 0.918 22 H 0.084 0.916 23 H 0.075 0.925 24 H 0.131 0.869 25 H 0.129 0.871 26 H 0.129 0.871 27 H 0.122 0.878 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -1.622 5.296 8.864 10.452 hybrid contribution 1.750 -0.480 0.177 1.823 sum 0.128 4.815 9.040 10.244 Atomic orbital electron populations 1.20528 0.91475 1.01688 1.01829 1.19064 0.95630 0.90390 1.03644 1.20358 0.93845 0.95978 1.08233 1.20601 0.93949 0.96682 1.01582 1.20362 0.98808 0.91088 1.10858 1.17949 0.90643 0.87604 0.96457 1.18148 0.88536 0.86035 1.05455 1.85909 1.39504 1.14183 1.82360 1.23116 0.95697 0.86568 0.95653 1.19902 0.89439 0.84360 0.96491 0.92535 1.21207 1.05200 1.39856 0.89260 0.90026 1.25096 0.97855 0.94864 0.94657 1.69913 1.35015 1.43462 1.03567 0.86821 0.83442 0.79501 0.79182 1.20062 1.21259 1.19433 1.46390 1.10184 1.04473 1.76592 0.91782 0.91624 0.92522 0.86918 0.87127 0.87055 0.87779 0.94261 0.92336 0.78143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.55 9.78 36.01 0.35 -1.20 16 2 C -0.09 -1.62 5.89 -104.46 -0.62 -2.24 16 3 C -0.16 -2.79 9.68 -39.57 -0.38 -3.17 16 4 C -0.11 -1.86 10.05 -39.56 -0.40 -2.26 16 5 C -0.19 -3.57 9.93 -39.44 -0.39 -3.96 16 6 C 0.18 3.86 6.35 -83.44 -0.53 3.33 16 7 C 0.07 1.46 6.41 -39.06 -0.25 1.21 16 8 O -0.31 -6.75 8.82 -19.57 -0.17 -6.93 16 9 C 0.07 1.34 6.62 37.44 0.25 1.59 16 10 C 0.20 4.53 2.66 -68.38 -0.18 4.35 16 11 H 0.06 1.21 6.11 -51.93 -0.32 0.90 16 12 C -0.52 -14.18 8.78 -34.44 -0.30 -14.48 16 13 H 0.08 2.55 7.80 -52.49 -0.41 2.14 16 14 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16 15 N -0.88 -26.42 13.96 55.43 0.77 -25.65 16 16 Si 0.88 20.44 26.85 -169.99 -4.56 15.87 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 19 H -0.27 -5.78 6.15 56.52 0.35 -5.43 16 20 N -0.75 -16.15 5.37 -52.33 -0.28 -16.43 16 21 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 22 H 0.06 1.04 7.51 -51.93 -0.39 0.65 16 23 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 24 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 25 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 26 H 0.11 1.91 8.06 -52.49 -0.42 1.49 16 27 H 0.10 1.94 8.14 -51.93 -0.42 1.51 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.38 7.67 8.05 -40.82 -0.33 7.34 16 LS Contribution 251.43 15.07 3.79 3.79 Total: -1.00 -30.42 251.43 -6.59 -37.02 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -3.59 Total: 7.05 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -2.55 Total: -14.72 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.49 Total: -42.08 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.17 Total: -6.93 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.56 Total: 15.87 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.42 -6.59 -37.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213113543.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.754 kcal (2) G-P(sol) polarization free energy of solvation -30.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds