Wall clock time and date at job start Mon Mar 30 2020 03:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38287 * 119.96830 * 2 1 4 4 C 1.38208 * 120.29520 * 179.97438 * 3 2 1 5 5 C 1.38323 * 120.05832 * 359.93039 * 4 3 2 6 6 C 1.38542 * 119.87190 * 0.06353 * 5 4 3 7 7 C 1.38611 * 119.97658 * 179.97438 * 2 1 3 8 8 O 1.35946 * 119.66410 * 0.21728 * 7 2 1 9 9 C 1.42966 * 117.75134 * 200.14942 * 8 7 2 10 10 C 1.53543 * 108.79113 * 310.55505 * 9 8 7 11 11 H 1.08993 * 109.89050 * 177.75735 * 10 9 8 12 12 C 1.50694 * 109.83447 * 298.69086 * 10 9 8 13 13 H 1.08000 * 120.00609 * 23.51813 * 12 10 9 14 14 C 1.37876 * 119.99740 * 203.52082 * 12 10 9 15 15 N 1.31521 * 120.00179 * 181.75085 * 14 12 10 16 16 Si 1.86803 * 120.00009 * 1.74841 * 14 12 10 17 17 H 1.48497 * 109.47040 * 84.82920 * 16 14 12 18 18 H 1.48500 * 109.47002 * 204.82669 * 16 14 12 19 19 H 1.48503 * 109.46840 * 324.82541 * 16 14 12 20 20 N 1.40385 * 120.08272 * 180.17192 * 6 5 4 21 21 H 1.09003 * 109.46892 * 90.00885 * 1 2 3 22 22 H 1.09007 * 109.46888 * 210.00202 * 1 2 3 23 23 H 1.08995 * 109.47355 * 330.00467 * 1 2 3 24 24 H 1.07999 * 119.85136 * 0.24302 * 3 2 1 25 25 H 1.08003 * 119.97146 * 179.97438 * 4 3 2 26 26 H 1.08001 * 120.06731 * 180.02562 * 5 4 3 27 27 H 1.09001 * 109.58316 * 190.76872 * 9 8 7 28 28 H 1.08997 * 109.69891 * 70.41708 * 9 8 7 29 29 H 0.97000 * 120.00038 * 179.97438 * 15 14 12 30 30 H 0.97004 * 121.14946 * 13.64105 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5799 1.2059 0.0005 5 6 4.2795 0.0126 0.0025 6 6 3.5922 -1.1903 0.0027 7 6 2.1996 -1.2007 0.0005 8 8 1.5125 -2.3737 -0.0034 9 6 2.1995 -3.5491 0.4330 10 6 3.5476 -3.6338 -0.2972 11 1 4.1043 -4.5034 0.0518 12 6 3.3187 -3.7360 -1.7831 13 1 2.3981 -3.3712 -2.2141 14 6 4.2846 -4.2954 -2.5925 15 7 4.0997 -4.3533 -3.8934 16 14 5.8560 -4.9709 -1.8415 17 1 5.6272 -6.3656 -1.3861 18 1 6.9380 -4.9534 -2.8585 19 1 6.2520 -4.1304 -0.6830 20 7 4.2978 -2.4039 0.0083 21 1 -0.3633 -0.0002 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5137 24 1 1.6549 2.1316 0.0040 25 1 4.1141 2.1445 0.0001 26 1 5.3595 0.0186 0.0034 27 1 1.6015 -4.4299 0.1991 28 1 2.3691 -3.4976 1.5084 29 1 4.7795 -4.7465 -4.4628 30 1 5.2467 -2.4317 0.2079 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213113543.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:56 Heat of formation + Delta-G solvation = -31.965573 kcal Electronic energy + Delta-G solvation = -14900.459114 eV Core-core repulsion = 12466.749690 eV Total energy + Delta-G solvation = -2433.709424 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.39938 -38.29489 -36.59445 -34.57818 -32.73869 -31.77956 -28.33202 -27.59522 -27.07068 -24.05873 -22.33173 -20.96410 -19.11671 -18.53320 -17.92859 -16.91258 -16.45411 -16.12204 -15.42585 -15.05223 -14.90419 -14.56845 -14.31790 -13.93006 -13.38950 -13.23130 -13.09474 -12.83095 -12.66829 -12.17745 -12.04944 -11.84947 -11.52392 -11.20712 -10.87354 -10.48433 -8.99658 -8.36590 -7.98791 -6.46619 0.63018 0.85185 1.30155 1.32151 1.42488 2.27269 2.50877 2.79628 3.08234 3.26336 3.95995 4.18095 4.25640 4.36183 4.44128 4.55272 4.60398 4.66473 4.82153 4.89913 4.97809 5.05898 5.39350 5.45596 5.49556 5.64333 5.82118 6.10643 6.15203 6.40506 6.63763 6.85724 7.09765 7.24368 8.80063 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.035676 B = 0.010480 C = 0.009606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.659670 B = 2671.132236 C = 2914.193920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.100 4.100 3 C -0.158 4.158 4 C -0.106 4.106 5 C -0.194 4.194 6 C 0.145 3.855 7 C 0.029 3.971 8 O -0.326 6.326 9 C 0.063 3.937 10 C 0.203 3.797 11 H 0.075 0.925 12 C -0.520 4.520 13 H 0.023 0.977 14 C 0.018 3.982 15 N -0.942 5.942 16 Si 0.957 3.043 17 H -0.259 1.259 18 H -0.293 1.293 19 H -0.241 1.241 20 N -0.750 5.750 21 H 0.061 0.939 22 H 0.056 0.944 23 H 0.090 0.910 24 H 0.150 0.850 25 H 0.149 0.851 26 H 0.128 0.872 27 H 0.111 0.889 28 H 0.066 0.934 29 H 0.267 0.733 30 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.343 7.048 11.166 13.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.101 4.101 3 C -0.178 4.178 4 C -0.124 4.124 5 C -0.217 4.217 6 C 0.041 3.959 7 C -0.020 4.020 8 O -0.240 6.240 9 C -0.013 4.013 10 C 0.100 3.900 11 H 0.093 0.907 12 C -0.559 4.559 13 H 0.041 0.959 14 C -0.181 4.181 15 N -0.581 5.581 16 Si 0.780 3.220 17 H -0.184 1.184 18 H -0.219 1.219 19 H -0.164 1.164 20 N -0.382 5.382 21 H 0.080 0.920 22 H 0.076 0.924 23 H 0.109 0.891 24 H 0.167 0.833 25 H 0.166 0.834 26 H 0.145 0.855 27 H 0.129 0.871 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -0.587 6.766 10.925 12.864 hybrid contribution 1.299 -0.752 -0.475 1.575 sum 0.712 6.013 10.450 12.078 Atomic orbital electron populations 1.20560 0.89679 1.02976 1.02010 1.19599 0.97330 0.90294 1.02882 1.20856 0.94263 0.96633 1.06012 1.21085 0.94257 0.97485 0.99600 1.20709 0.99865 0.90990 1.10182 1.18287 0.90982 0.88308 0.98277 1.18655 0.89226 0.86626 1.07448 1.85856 1.40232 1.14909 1.83052 1.23210 0.94605 0.86618 0.96853 1.19737 0.91295 0.85472 0.93520 0.90696 1.21319 1.03072 1.39307 0.92181 0.95908 1.26080 1.02041 0.95185 0.94842 1.70092 1.36700 1.45674 1.05592 0.85638 0.77821 0.79731 0.78849 1.18368 1.21907 1.16419 1.45902 1.10493 1.04238 1.77611 0.92048 0.92449 0.89141 0.83279 0.83351 0.85457 0.87078 0.91566 0.92366 0.77164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.87 9.78 71.24 0.70 -2.18 16 2 C -0.10 -3.63 5.89 -19.76 -0.12 -3.75 16 3 C -0.16 -4.85 9.68 22.27 0.22 -4.64 16 4 C -0.11 -3.23 10.05 22.28 0.22 -3.00 16 5 C -0.19 -6.98 9.93 22.36 0.22 -6.76 16 6 C 0.15 6.15 6.35 38.09 0.24 6.39 16 7 C 0.03 1.25 6.41 22.61 0.14 1.39 16 8 O -0.33 -14.70 8.82 -92.94 -0.82 -15.52 16 9 C 0.06 2.56 6.62 72.16 0.48 3.04 16 10 C 0.20 9.13 2.66 44.28 0.12 9.24 16 11 H 0.08 3.07 6.11 -2.39 -0.01 3.05 16 12 C -0.52 -29.52 8.78 25.60 0.22 -29.29 16 13 H 0.02 1.51 7.80 -2.91 -0.02 1.49 16 14 C 0.02 1.01 5.47 84.65 0.46 1.47 16 15 N -0.94 -58.67 13.96 21.45 0.30 -58.37 16 16 Si 0.96 41.94 26.85 68.60 1.84 43.78 16 17 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 18 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 19 H -0.24 -9.31 6.15 99.48 0.61 -8.70 16 20 N -0.75 -31.70 5.37 -319.47 -1.72 -33.42 16 21 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 22 H 0.06 1.80 7.51 -2.38 -0.02 1.78 16 23 H 0.09 2.06 8.08 -2.39 -0.02 2.04 16 24 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 25 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 26 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 27 H 0.11 4.18 8.14 -2.39 -0.02 4.17 16 28 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 30 H 0.39 14.88 8.05 -92.71 -0.75 14.14 16 Total: -1.00 -69.07 251.43 2.82 -66.24 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.31 Total: 25.35 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: 2.91 Total: -28.08 kcal Atomic # 7 Polarization: -90.37 SS G_CDS: -1.42 Total: -91.79 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.82 Total: -15.52 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.84 Total: 43.78 kcal Total: -69.07 2.82 -66.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213113543.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.279 kcal (2) G-P(sol) polarization free energy of solvation -69.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds